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Using Text-Mining and Crowd-Sourcing to Build a Structure Centric  Community for Chemists  Antony Williams ACS Philadelphia 2008
Imagine a time when …. ,[object Object],[object Object],[object Object]
ChemSpider - A Search Engine for Chemists ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
ChemSpider Data Content ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Tell me about Aspirin
Tell me about Aspirin
Links out to KEGG Kyoto Encyclopedia of Genes and Genomes
Tell me about Aspirin
Tell me About Aspirin
Tell me about Aspirin
Tell me about Aspirin
Text- Indexing  and ChemSpider? ,[object Object],[object Object]
Open Access Literature Search
Search PubMed – ChemSpider
Structure-Centric  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
“Entity Extraction” ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Name Recognition ,[object Object]
Name Recognition ,[object Object],[object Object]
How Many Chemical Names? ,[object Object]
How Many Chemical Names? ,[object Object]
Daily Med ,[object Object]
Search Aspirin on Daily Med
Daily Med
Analysis of Daily Med ,[object Object],[object Object],[object Object],[object Object],[object Object]
What did we find? ,[object Object],[object Object],[object Object]
QVAR
QVAR
Other Daily Med Structures
Full Markup of the Document
Making Open Access Articles Searchable Proof of Concept ,[object Object],[object Object],[object Object],[object Object]
Document markup ,[object Object],[object Object]
A Standard for Document Markup? ,[object Object],[object Object]
NLM/DTD markup
Chemistry and Biology
Chemistry and Biology ,[object Object]
Document markup
Searching from the Structure Balloon
A Platform for Markup ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Online Markup
Automated markup
Name to Structure Conversion
Conversion of Structure Images ,[object Object],[object Object],[object Object],[object Object]
Cryptomisrine
Structure Conversion from Images - OSRA
Structure Conversion from Images-CLiDE ,[object Object]
Supports Word .DOC, HTML, RTF
Extensible Markup Process  ,[object Object],[object Object],[object Object],[object Object]
Patents and PubMed
What’s Coming…today.. ,[object Object],[object Object]
Working on ,[object Object]
What’s Coming? ,[object Object],[object Object],[object Object],[object Object],[object Object]
Conclusions ,[object Object],[object Object],[object Object],[object Object]
Conclusions ,[object Object],[object Object],[object Object]
Acknowledgements  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Further reading ,[object Object],[object Object],[object Object]

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Using Text-Mining and Crowdsourced Curation to Build a Structure Centric Community for Chemists