Arizona Broadband Policy Past, Present, and Future Presentation 3/25/24
Collaborations Between Calit2, SIO, and the Venter Institute
1. “ Collaborations Between Calit2, SIO, and the Venter Institute—a Beginning " Talk to the UCSD Representative Assembly La Jolla, CA November 29, 2005 Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technology; Harry E. Gruber Professor, Dept. of Computer Science and Engineering Jacobs School of Engineering, UCSD
6. Metagenomics “Extreme Assembly” Requires Large Amount of Pixel Real Estate Source: Karin Remington J. Craig Venter Institute Prochlorococcus Microbacterium Burkholderia Rhodobacter SAR-86 unknown unknown
7. Metagenomics Requires a Global View of Data and the Ability to Zoom Into Detail Interactively Overlay of Metagenomics Data onto Sequenced Reference Genomes (This Image: Prochloroccocus marinus MED4) Source: Karin Remington J. Craig Venter Institute
8. The OptIPuter – Creating High Resolution Portals Over Dedicated Optical Channels to Global Science Data Green: Purkinje Cells Red: Glial Cells Light Blue: Nuclear DNA Source: Mark Ellisman, David Lee, Jason Leigh 300 MPixel Image! Calit2 (UCSD, UCI) and UIC Lead Campuses—Larry Smarr PI Partners: SDSC, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST
9. Scalable Displays Allow Both Global Content and Fine Detail Source: Mark Ellisman, David Lee, Jason Leigh 30 MPixel SunScreen Display Driven by a 20-node Sun Opteron Visualization Cluster
10. Allows for Interactive Zooming from Cerebellum to Individual Neurons Source: Mark Ellisman, David Lee, Jason Leigh
11. UCSD and UCI are Prototyping Fiber Infrastructure to End-User Laboratories & Large Rotating Data Stores SIO Ocean Supercomputer IBM Storage Cluster 2 Ten Gbps Campus Lambda Raceway Streaming Microscope Source: Phil Papadopoulos, SDSC, Calit2 UCSD Campus LambdaStore Architecture Global Optical Grid NCMIR, SOM EBU1 JSOE
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13. First Remote Interactive High Definition Video Exploration of Deep Sea Vents Source John Delaney & Deborah Kelley, UWash Canadian-U.S. Collaboration
14. A Near Future Metagenomics Fiber Optic-Enabled Data Generator Source John Delaney, UWash
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16. Calit2 Intends to Jump Beyond Traditional Web-Accessible Databases Data Backend (DB, Files) W E B PORTAL (pre-filtered, queries metadata) Response Request + many others Source: Phil Papadopoulos, SDSC, Calit2 BIRN PDB NCBI Genbank
17. Calit2’s Direct Access Core Architecture Will Create Next Generation Metagenomics Server Traditional User Response Request Source: Phil Papadopoulos, SDSC, Calit2 + Web Services Flat File Server Farm W E B PORTAL Dedicated Compute Farm (100s of CPUs) TeraGrid: Cyberinfrastructure Backplane (scheduled activities, e.g. all by all comparison) (10000s of CPUs) Web (other service) Local Cluster Local Environment Direct Access Lambda Cnxns OptIPuter Cluster Cloud Data- Base Farm 10 GigE Fabric
18. The OptIPuter Enabled Collaboratory: Remote Researchers Jointly Exploring Complex Data New Home of SDSC/Calit2 Synthesis Center Calit2/EVL/NCMIR Tiled Displays with HD Video Source: Chaitan Baru, SDSC Source: Mark Ellisman, NCMIR
19. Extending Telepresence with Remote Interactive Analysis of Data Over NLR SIO/UCSD NASA Goddard www.calit2.net/articles/article.php?id=660 August 8, 2005 HDTV Over Lambda OptIPuter Visualized Data 25 Miles Venter Institute
20. First Trans-Pacific Super High Definition Telepresence Meeting in New Calit2 Digital Cinema Auditorium Sony NTT SGI Lays Technical Basis for Global Scientific Collaboration Keio University President Anzai UCSD Chancellor Fox