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بسم الله الرحمن الرحیم
Virulence and Molecular diversity in  Puccinia striiformis  f.sp . tritici  from IRAN Hojjat Rabbani General Manager of North khorassan Agricultural and Natural Resources Research Center
1,3 PST-3 1964 Stepwise Evolution of PST Races  1 2 3 4 5 6 7 8 R 47-51 Lemhi Chinese 166 Heines VII Moro Paha Druchamp Produra 9 10 11 12 13 14 15 Yamhill Stephens  Lee  Fielder  Tyee  Tres  Hyak  16 Express  17 Yr8 18 Yr9  19  Clement  1,3, 11 PST-38 1987 1,3, 12 PST-22 1981 1,3, 11,12 PST-42 1990 PST-59 1998 1,3,11,12, 16 1,3, 8 ,11,12,16,17,18,19,20 PST-80 2000 PST-97 2002 1,3, 10 ,11,12,16,17,18,19,20 PST-98 2002 1,3, 8,10 ,11,12,16,17,18,19,20 New 2003 1,3, 8,9,10 ,11,12,16,17,18,19,20 PST-78 2000 1,3,11,12,16, 17,18,19,20 20 Compair 1,3, 9 ,11,12,16,17,18,19,20 PST-99 2002
Start of Race studing 20A  &  25A 1960 Neiman  et al .,1968  Bamdadian 1972 14/8 ،  14/8A ، 19, 2D   20A   and 25A   96E16   on Falat and Qods cultivars Bamdadian 1984 Yr SD , Yr A,  Yr 25, Yr 24,  Yr 10,  Yr 9,  Yr 7,  Yr 6,  Yr 4  and  Yr 2   Torabi  et al.,  1997 Reviwes Yr 3  5  4  10 sp nd cv Torabi  et al.,  1999   Yr SD,  Yr 24, Yr 23,  Yr 22,  Yr 19,  Yr 9,  Yr 8,  Yr 7,  Yr 2, YrA and   Yr 1 Nazari et al., 1998 Yr 24, Yr 23,  Yr 22,  Yr 19,  Yr 9,  Yr 8,  Yr 7, Yr 6,  Yr 24, Yr A ,  Yr SU, Yr ND, Yr CV   Torabi 2000, Afshari 2003 and 2006 Yr 24,  Yr 9,  Yr 7,  Yr 6,  Yr 2 and YrA
Material & Methods Special Greenhouse for Yellow Rust Research  Seed and Plant Improvement Institute Glass house
Sampling 2005-2006 Material & Methods
Sample Collection Material & Methods
Material & Methods
Material & Methods Multiplication of the Fungus 7-days-old seedlings of cultivar Bulani Maleic hydrazide acid (0.25 g·liter −1 ) per pot
Material & Methods
Material & Methods
Material & Methods After 10 days, latent lesions could be observed for each successful infection
Material & Methods Collecting Urediniospores
Material & Methods Dried in a Desiccator at 4°C for 3 days, and stored in microtubes
Material & Methods Microtubes stored in Liquid Nitrogen
Race Determination according to Johnson  et al ., 1972 McNeal  et al ., 1990   Material & Methods two-leaf-stage onto  seedlings of each variety. Incubation: dark climatic room for 24 h at 8°C and 100% relative humidity  greenhouse at 20°C for 10 days
Molecular Research
DNA extraction Digestion Adapter Ligation Preamplification PCR Selective amplication Polyacryl -Amid gel Electrophoresis Data Analysis AFLP Analysis Material & Methods
DNA Extraction 1- Grinding ( 15 mg Urediniospores + Mercapto-Ethanol) 65C  1h 2-Phenol-Chloroform- Isoamylalchohol 14000rpm  3min  4C 3-Chloroform 14000  3min  4C 4-Chloroform 14000  3min  4C 5- IsoPropanple  -20C  30min 17000rpm  4C  30min Drying  TE  Buffer Rnase  37C  1h Material & Methods Nanodrop Spectrophotometer
Selective amplification PCR  Eco RI+ AC / AG/ GC/ GT  MseI +  AA/ AC/ AG/ GT 13 cycles at 94°C for 30 s, 65°C for 30 s with a 0.7°C decrement per cycle, and 72°C for 1 min, and then  23 cycles at 94°C for 30 s, 56°C for 30 s, and 72°C for 1 min . Digestion Genomic DNA (100 ng)  Eco RI  and   Mse I   Restriction Enzyme  (5 U each; Biolabs)  at 37°C in 40 μl of RL buffer  1 h Adapter Ligation 5 pmol  Eco RI adapter , 50 pmol  Mse I adapter , 1 pmol  ATP  1 U ligase (Fermentas),  incubated 3 h more at 37°C  diluted Three times Preamplification  PCR  Eco RI+0(5-GACTGCGTACCAATC-3)  Mse I+0(5-GATGAGTCCTGAGTAA-3) 30 cycles at 94°C for 30 s, 56°C for 1 min, and 72°C for 1 min.   Material & Methods
Formammid  Temprature  UREA Material & Methods
Silver staining 1- Fix ( 10% acetic acid)   2- Rinse ( Ultr pure water) 3- Impregnate (AgNo3 1) 4- Rinse 5- Develop 6- Stop 7- rinse and store Material & Methods AFLP Finger printing Gel
IGS (intergenic spacers) SEQUENCE RESEARCH L318 5-GCTACGATCCACTGAGGTTC-3 5SK  5-CTTCGCAGATCGGACGGGAT-3 Material & Methods PCR Reaction
Material & Methods PCR Product
Band Cutting Bio spin  Gel Extraction Kit DNA Extraction from the Gel Material & Methods
DNA Cloning according to  pGEM  - T Vector System R 1- Ligation of the  pGEM-T vector  and  PCR product Promega   Cooporation T4 DNA Ligase T4 DNA Ligase 10 X buffer pGEM-T vector Insert DNA At least 3 h. at 15 o  C Material & Methods
Transformation of Ligated PCR:pGRM-T vector 1- High efficiency Competent Cells( JM1o9) 2- LB/ Ampicillin/IPTG/X-gal plate 6 h  37 oC Incubate 4 oC Material & Methods
White colones are  selected as Positive  transformed colones Material & Methods
+ _ Material & Methods
ABI PRISM    BigDye    Terminator v. 3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, California, USA) Material & Methods
Results & Discussion
V irulence to resistanse Genes  Yr 1 ،  Yr 2 ،  Yr 4   ،  Yr 6 ،  Yr 7 ،  Yr 8 ،  Yr 9 ،  Yr 10 ،  Yr 19 ،  Yr 22 ،  Yr 23 ،  Yr 24 ،  Yr  SD ،  Yr  ND ،  Yr  SU ،  Yr  CV   و  Yr  SP But  Yr 3 and  Yr 5 35 Phisiologic Races were Detected 178E0A+  Khuzestan  and Iranshahr 64E 241 A+  Mazandaran  Fars  Khuzestan  Hamadan  Virulence for  Yr 2,  Yr 24 , Yr 7 and  Yr A was detected in all around Iran Results & Discussion
Safi3 , Ahvz, Ilam  and Ghazvin  4.6% First  time Detected  1999 Khorasan  Yr 1 Results & Discussion Persian Gulf
Heines Kolben  Yr2  77% Heines PEKO  Yr2 and Yr6  37% Kalyansona  Yr2 2000  reported  Yr 2 Results & Discussion
Yr  4 1997  for the first time 34% Results & Discussion
Yr  6 Results & Discussion Torabi  et al ., 1997 Nazari  et al ., 1998  High F. Torabi  et al ., 2000  High F . Afshari  et al ., 2003, 2005  High F .
Yr7 Results & Discussion Yr  7  In  Lee  and  Riechesberg 42 Torabi  et al ., 1997 Nazari  et al ., 1998  Common. Torabi  et al ., 1999 Torabi  et al ., 2000  High F . Afshari  et al ., 2003, 2005  High F .
Yr  8 Results & Discussion Nazari  et al ., 1998  Common. Torabi  et al ., 1999 Low F. Torabi  et al ., 2000  High F . Afshari  et al ., 2003, 2005  High F .
Yr 9 Results & Discussion 1993  Falat  Epidemy Torabi  et al ., 1997 Nazari  et al ., 1998  Common. Torabi  et al ., 1999 Torabi  et al ., 2000  High F . Afshari  et al ., 2003, 2005  High F .
Yr 10 Torabi  et al ., 1997 Mardukhi and Torabi., 1998  Shiraz and Moghan   Torabi  et al ., 1999 Torabi  et al ., 2000  High F . Afshari  et al ., 2003, 2005  High F . Results & Discussion
Yr19 Compare line  (  Yr 8) Torabi  et al ., 1997 Nazari  et al ., 1998  Results & Discussion
Yr22 Lee  Yr 7 Yr22 and Yr23 ( Chen and Line 1995) Torabi  et al ., 1998 Nazari  et al ., 1998  Results & Discussion
Yr23 Lee  Yr 7 Yr22 and Yr23 ( Chen and Line 1995) Torabi  et al ., 1998 Nazari  et al ., 1998  Results & Discussion
Yr  24 Meering+24  Isogenic line Torabi  et al ., 1997 Torabi  et al ., 1999 Nazari et al., 1998  Common Torabi  et al ., 2000  High F . Afshari  et al ., 2003, 2005  High F . Results & Discussion
A  Golestan and  Mazandadaran B  Mazandaran   C Khuzestan Results & Discussion
D  Fars E  Fars F  Fars G  Khorassan H  Ardebil I  Center  West and North west Results & Discussion
D  Fars E  Fars F  Fars G  Khorassan H  Ardebil I  Center  West and North west Results & Discussion B D E H A C F G I
High Genetic Variation  AND  Relationship between Geographical regions and AFLP groups Why: 1-  Different Environmental Condition  Different cultivars  Different History of Evolution In a uniform environment selection may favor particular genotypes This metapopulation view of evolution and diversity of pathogen population differed markedy from models that are based on  evolution in a uniform invironment where mutation rate and frequency dependent selection are the most important pressure. 2- In Addition to Different Climatic condition Each Provinces Prefer special Cultivars  Special History of Evolution Individuals respond asynchronously to differences in the local selective environment.
Genetic Distance and Identity of Populations 54% Similarity metapopulation Golestan Mazandaran Khorassan Khuzestan West & nwest Fars Center
D  Fars E  Fars F  Fars G  Khorassan H  Ardebil I  Center  West and North west Results & Discussion A B C F D E G H I
M  &  G W& NW Kho Khu F Mediteranian Wind Flow Sudanian Wind Flow
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Virulence and Molecular diversity in Puccinia striiformis f.sp. tritici from IRAN

  • 2. Virulence and Molecular diversity in Puccinia striiformis f.sp . tritici from IRAN Hojjat Rabbani General Manager of North khorassan Agricultural and Natural Resources Research Center
  • 3. 1,3 PST-3 1964 Stepwise Evolution of PST Races 1 2 3 4 5 6 7 8 R 47-51 Lemhi Chinese 166 Heines VII Moro Paha Druchamp Produra 9 10 11 12 13 14 15 Yamhill Stephens Lee Fielder Tyee Tres Hyak 16 Express 17 Yr8 18 Yr9 19 Clement 1,3, 11 PST-38 1987 1,3, 12 PST-22 1981 1,3, 11,12 PST-42 1990 PST-59 1998 1,3,11,12, 16 1,3, 8 ,11,12,16,17,18,19,20 PST-80 2000 PST-97 2002 1,3, 10 ,11,12,16,17,18,19,20 PST-98 2002 1,3, 8,10 ,11,12,16,17,18,19,20 New 2003 1,3, 8,9,10 ,11,12,16,17,18,19,20 PST-78 2000 1,3,11,12,16, 17,18,19,20 20 Compair 1,3, 9 ,11,12,16,17,18,19,20 PST-99 2002
  • 4. Start of Race studing 20A & 25A 1960 Neiman et al .,1968 Bamdadian 1972 14/8 ، 14/8A ، 19, 2D 20A and 25A 96E16 on Falat and Qods cultivars Bamdadian 1984 Yr SD , Yr A, Yr 25, Yr 24, Yr 10, Yr 9, Yr 7, Yr 6, Yr 4 and Yr 2 Torabi et al., 1997 Reviwes Yr 3 5 4 10 sp nd cv Torabi et al., 1999 Yr SD, Yr 24, Yr 23, Yr 22, Yr 19, Yr 9, Yr 8, Yr 7, Yr 2, YrA and Yr 1 Nazari et al., 1998 Yr 24, Yr 23, Yr 22, Yr 19, Yr 9, Yr 8, Yr 7, Yr 6, Yr 24, Yr A , Yr SU, Yr ND, Yr CV Torabi 2000, Afshari 2003 and 2006 Yr 24, Yr 9, Yr 7, Yr 6, Yr 2 and YrA
  • 5. Material & Methods Special Greenhouse for Yellow Rust Research Seed and Plant Improvement Institute Glass house
  • 9. Material & Methods Multiplication of the Fungus 7-days-old seedlings of cultivar Bulani Maleic hydrazide acid (0.25 g·liter −1 ) per pot
  • 12. Material & Methods After 10 days, latent lesions could be observed for each successful infection
  • 13. Material & Methods Collecting Urediniospores
  • 14. Material & Methods Dried in a Desiccator at 4°C for 3 days, and stored in microtubes
  • 15. Material & Methods Microtubes stored in Liquid Nitrogen
  • 16. Race Determination according to Johnson et al ., 1972 McNeal et al ., 1990 Material & Methods two-leaf-stage onto seedlings of each variety. Incubation: dark climatic room for 24 h at 8°C and 100% relative humidity greenhouse at 20°C for 10 days
  • 18. DNA extraction Digestion Adapter Ligation Preamplification PCR Selective amplication Polyacryl -Amid gel Electrophoresis Data Analysis AFLP Analysis Material & Methods
  • 19. DNA Extraction 1- Grinding ( 15 mg Urediniospores + Mercapto-Ethanol) 65C 1h 2-Phenol-Chloroform- Isoamylalchohol 14000rpm 3min 4C 3-Chloroform 14000 3min 4C 4-Chloroform 14000 3min 4C 5- IsoPropanple -20C 30min 17000rpm 4C 30min Drying TE Buffer Rnase 37C 1h Material & Methods Nanodrop Spectrophotometer
  • 20. Selective amplification PCR Eco RI+ AC / AG/ GC/ GT MseI + AA/ AC/ AG/ GT 13 cycles at 94°C for 30 s, 65°C for 30 s with a 0.7°C decrement per cycle, and 72°C for 1 min, and then 23 cycles at 94°C for 30 s, 56°C for 30 s, and 72°C for 1 min . Digestion Genomic DNA (100 ng) Eco RI and Mse I Restriction Enzyme (5 U each; Biolabs) at 37°C in 40 μl of RL buffer 1 h Adapter Ligation 5 pmol Eco RI adapter , 50 pmol Mse I adapter , 1 pmol ATP 1 U ligase (Fermentas), incubated 3 h more at 37°C diluted Three times Preamplification PCR Eco RI+0(5-GACTGCGTACCAATC-3) Mse I+0(5-GATGAGTCCTGAGTAA-3) 30 cycles at 94°C for 30 s, 56°C for 1 min, and 72°C for 1 min. Material & Methods
  • 21. Formammid Temprature UREA Material & Methods
  • 22. Silver staining 1- Fix ( 10% acetic acid) 2- Rinse ( Ultr pure water) 3- Impregnate (AgNo3 1) 4- Rinse 5- Develop 6- Stop 7- rinse and store Material & Methods AFLP Finger printing Gel
  • 23. IGS (intergenic spacers) SEQUENCE RESEARCH L318 5-GCTACGATCCACTGAGGTTC-3 5SK 5-CTTCGCAGATCGGACGGGAT-3 Material & Methods PCR Reaction
  • 24. Material & Methods PCR Product
  • 25. Band Cutting Bio spin Gel Extraction Kit DNA Extraction from the Gel Material & Methods
  • 26. DNA Cloning according to pGEM - T Vector System R 1- Ligation of the pGEM-T vector and PCR product Promega Cooporation T4 DNA Ligase T4 DNA Ligase 10 X buffer pGEM-T vector Insert DNA At least 3 h. at 15 o C Material & Methods
  • 27. Transformation of Ligated PCR:pGRM-T vector 1- High efficiency Competent Cells( JM1o9) 2- LB/ Ampicillin/IPTG/X-gal plate 6 h 37 oC Incubate 4 oC Material & Methods
  • 28. White colones are selected as Positive transformed colones Material & Methods
  • 29. + _ Material & Methods
  • 30. ABI PRISM  BigDye  Terminator v. 3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, California, USA) Material & Methods
  • 32. V irulence to resistanse Genes Yr 1 ، Yr 2 ، Yr 4 ، Yr 6 ، Yr 7 ، Yr 8 ، Yr 9 ، Yr 10 ، Yr 19 ، Yr 22 ، Yr 23 ، Yr 24 ، Yr SD ، Yr ND ، Yr SU ، Yr CV و Yr SP But Yr 3 and Yr 5 35 Phisiologic Races were Detected 178E0A+ Khuzestan and Iranshahr 64E 241 A+ Mazandaran Fars Khuzestan Hamadan Virulence for Yr 2, Yr 24 , Yr 7 and Yr A was detected in all around Iran Results & Discussion
  • 33. Safi3 , Ahvz, Ilam and Ghazvin 4.6% First time Detected 1999 Khorasan Yr 1 Results & Discussion Persian Gulf
  • 34. Heines Kolben Yr2 77% Heines PEKO Yr2 and Yr6 37% Kalyansona Yr2 2000 reported Yr 2 Results & Discussion
  • 35. Yr 4 1997 for the first time 34% Results & Discussion
  • 36. Yr 6 Results & Discussion Torabi et al ., 1997 Nazari et al ., 1998 High F. Torabi et al ., 2000 High F . Afshari et al ., 2003, 2005 High F .
  • 37. Yr7 Results & Discussion Yr 7 In Lee and Riechesberg 42 Torabi et al ., 1997 Nazari et al ., 1998 Common. Torabi et al ., 1999 Torabi et al ., 2000 High F . Afshari et al ., 2003, 2005 High F .
  • 38. Yr 8 Results & Discussion Nazari et al ., 1998 Common. Torabi et al ., 1999 Low F. Torabi et al ., 2000 High F . Afshari et al ., 2003, 2005 High F .
  • 39. Yr 9 Results & Discussion 1993 Falat Epidemy Torabi et al ., 1997 Nazari et al ., 1998 Common. Torabi et al ., 1999 Torabi et al ., 2000 High F . Afshari et al ., 2003, 2005 High F .
  • 40. Yr 10 Torabi et al ., 1997 Mardukhi and Torabi., 1998 Shiraz and Moghan Torabi et al ., 1999 Torabi et al ., 2000 High F . Afshari et al ., 2003, 2005 High F . Results & Discussion
  • 41. Yr19 Compare line ( Yr 8) Torabi et al ., 1997 Nazari et al ., 1998 Results & Discussion
  • 42. Yr22 Lee Yr 7 Yr22 and Yr23 ( Chen and Line 1995) Torabi et al ., 1998 Nazari et al ., 1998 Results & Discussion
  • 43. Yr23 Lee Yr 7 Yr22 and Yr23 ( Chen and Line 1995) Torabi et al ., 1998 Nazari et al ., 1998 Results & Discussion
  • 44. Yr 24 Meering+24 Isogenic line Torabi et al ., 1997 Torabi et al ., 1999 Nazari et al., 1998 Common Torabi et al ., 2000 High F . Afshari et al ., 2003, 2005 High F . Results & Discussion
  • 45. A Golestan and Mazandadaran B Mazandaran C Khuzestan Results & Discussion
  • 46. D Fars E Fars F Fars G Khorassan H Ardebil I Center West and North west Results & Discussion
  • 47. D Fars E Fars F Fars G Khorassan H Ardebil I Center West and North west Results & Discussion B D E H A C F G I
  • 48. High Genetic Variation AND Relationship between Geographical regions and AFLP groups Why: 1- Different Environmental Condition Different cultivars Different History of Evolution In a uniform environment selection may favor particular genotypes This metapopulation view of evolution and diversity of pathogen population differed markedy from models that are based on evolution in a uniform invironment where mutation rate and frequency dependent selection are the most important pressure. 2- In Addition to Different Climatic condition Each Provinces Prefer special Cultivars Special History of Evolution Individuals respond asynchronously to differences in the local selective environment.
  • 49. Genetic Distance and Identity of Populations 54% Similarity metapopulation Golestan Mazandaran Khorassan Khuzestan West & nwest Fars Center
  • 50. D Fars E Fars F Fars G Khorassan H Ardebil I Center West and North west Results & Discussion A B C F D E G H I
  • 51. M & G W& NW Kho Khu F Mediteranian Wind Flow Sudanian Wind Flow
  • 52.