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Poultry Diseases Detection using
               Dempster-Shafer Theory
                              Andino Maseleno, Md. Mahmud Hasan
         Department of Computer Science, Faculty of Science, Universiti Brunei Darussalam
                 Jalan Tungku Link, Gadong BE 1410, Negara Brunei Darussalam
                E-mail: andinomaseleno@yahoo.com, mahmud.hasan@ubd.edu.bn



   ABSTRACT
   Based on Cumulative Number of Confirmed Human Cases of Avian Influenza Reported to World
   Health Organization (WHO) in the 2011 from 15 countries, Indonesia has the largest number death
   because Avian Influenza which 146 deaths. In this research, we are using Dempster-Shafer Theory
   for detecting poultry diseases and displaying the result of detection process. In this paper we use
   five symptoms as major symptoms which include depression, combs, wattle, bluish face region,
   swollen face region, narrowness of eyes, and balance disorders. Dempster-Shafer theory to
   quantify the degree of belief, our approach uses Dempster-Shafer theory to combine beliefs under
   conditions of uncertainty and ignorance, and allows quantitative measurement of the belief and
   plausibility in our identification result. The result reveal that Dempster-Shafer theory has
   successfully identified the existence of poultry diseases.

   Keywords: poultry diseases; detection; Dempster-Shafer theory



INTRODUCTION                                          rate in developing countries compared with
    The demand for chicken meat has been              more developed countries [3].
increasing because it has become cheaper                 The remainder is organized as follows. The
relative to other meats The term poultry refers       Dempster-Shafer theory is briefly reviewed in
to domesticated fowl raised for meat or eggs.         Section 2. The experimental results are
The poultry industry is dominated by the              presented in Section 3, and final remarks are
chicken companies, development of poultry             concluded in Section 4.
population and poultry industry is very rapidly
threatened by the presence of poultry disease.        DEMPSTER-SHAFER THEORY
Disease is defined as a departure from health,            The Dempster-Shafer theory was first
and includes any condition that impairs normal        introduced by Dempster [4] and then extended
body functions. Disease results from a                by shafer [5], but the kind of reasoning the
combination of indirect causes that reduce            theory uses can be found as far back as the
resistance or predispose an animal to catching        seventeenth century. This theory is actually an
a disease, as well as the direct causes that          extension to classic probabilistic uncertainty
produce the disease.                                  modeling. Whereas the Bayesian theory
    Avian influenza virus, which has been             requires probabilities for each question of
limited to poultry, now has spread to migrating       interest, belief functions allow us to base
birds and has emerged in mammals and                  degrees of belief for on question on
among the human population. It presents a             probabilities for a related question.
distinct threat of a pandemic for which the               The consultation process begins with
World Health Organization and other                   selecting symptoms. If there are symptoms
organizations are making preparations [1]. In         then will calculate, The Dempster-Shafer
2005, the World Health Assembly urged its             theory provides a rule to combine evidences
Member       States    to   develop    national       from independent observers and into a single
preparedness plans for pandemic influenza [2].        and more informative hint. Evidence theory is
Developing countries face particular planning         based on belief function and plausible
and     other    challenges   with   pandemic         reasoning. First of all, we must define a frame
preparedness as there may be a higher death           of discernment, indicated by the sign Θ . The
                                                             Θ
                                                      sign 2 indicates the set composed of all the
subset generated by the frame of discernment.                                                    (3)
For a hypothesis set, denoted by A,
m(A)→[0,1].                                          Where
m( )=0
                                                                                                 (4)
                                              (1)

∅ is the sign of an empty set. The function m is
the basic probability assignment. Dempster's         Flowchart of poultry diseases detection shown
rule of combination combines two independent         in Figure 1. Table 1 shown basic probability
sets of mass assignments.                            assignment of symptom from each condition.

                     (∅) = 0                   (2)


Table 1. Basic probability assignment of symptom




                                                     A. Symptom 1
    Start
                                                          Depression is a symptom of Avian
                                                     Influenza (AI), Newcastle Disease (ND), Fowl
                                                     Cholera (FC), Infectious Bronchitis respiratory
               Yes
                                                     form     (IBRespi),    Infectious    Bronchitis
                                Input
  Symptoms                  m1 (B) m2 (C)            reproduction form (IBRepro), and Swollen
                                                     Head Syndrome (SHS). The measures of
                                                     uncertainty, taken collectively are known in
        No                                           Dempster Shafer Theory terminology as a
                                                     ``basic probability assignment'' (bpa). Hence
   m (A) = 1                                         we have a bpa, say m 1 of 0.7 given to the focal
                                                     element {AI, ND, FC, IBRespi, IBRepro, SHS}
                                                     in example, m1({AI, ND, FC, IBRespi, IBRepro,
                                                     SHS}) = 0.7, since we know nothing about the
     End
                                                     remaining probability it is allocated to the
                                                     whole of the frame of the discernment in
  Fig 1. Flowchart of Poultry Diseases Detection     example, m1({AI, ND, FC, IBRespi, IBRepro,
                                                     SHS}) = 0.3, so:
   The following will be shown implementation        m1{AI, ND, FC, IBRespi, IBRepro, SHS} = 0.7
of the Dempster-Shafer theory to diagnose            m1{Θ} = 1 - 0.7 = 0.3
poultry diseases.
Symptoms:                                            B. Symptom 2
1. Depression                                           Combs, wattle, bluish face region are
2. Combs, wattle, bluish face region                 symptoms of Avian Influenza with a bpa of 0.9,
3. Swollen face region                               so that:
4. Narrowness of eyes                                m2{AI} = 0.9
5. Balance disorders                                 m2 {Θ} = 1 – 0.9 = 0.1
                                                        We combining symptom 1, and symptom 2
                                                     as seen in the table 2.
Table 2. Combination of symptom 1 and symptom 2                      0.01  0.01
                                                   m7 (SHS) =                         0.17
                                                                  1  (0.81  0.07)
                                                                     0.09
                                                   m7 (AI) =                       0.75
                                                              1  (0.81  0.07)
            0.63  0.27                                                          0.01
m3 (AI) =                0.9                      m7 (AI, ND, FC) =                         0.08
               1 0                                                       1  (0.81  0.07)
m3 (AI, ND, FC, IBRespi, IBRepro, SHS) =           m7 (AI, ND, FC, IBRespi, IBRepro, SHS) =
0.07
      0.07                                              0.001
1 0                                                                    0.01
                                                   1  (0.81  0.07)
            0.03
m3 (Θ) =          0.03                                             0.001
            1 0                                   m7 (Θ) =                        0.01
                                                              1  (0.81  0.07)
C. Symptom 3
    Swollen face region is a symptom of Avian      E. Symptom 5
Influenza, Newcastle Disease, Fowl Cholera             Balance disorders is a symptom of
with a bpa of 0.8, so that                         Newcastle Diseases and Swollen Head
m4 {AI, ND, FC} = 0.8                              Syndrome with a bpa of 0.6, so that:
m4 (Θ) = 1 – 0.8= 0.2                              m8 {ND,SHS} = 0.6
    We combining symptom 1, symptom 2, and         m8 {Θ} = 1 - 0.6 = 0.4
symptom 3 as seen in the table 3.                     We combining symptom 1, symptom 2,
                                                   symptom 3, symptom 4 and symptom 5 as
Table 3. Combination of symptom 1, symptom 2,      seen in the table 5.
and symptom 3
                                                   Table 5. Combination of Symptom 1, Symptom 2,
                                                   Symptom 3, Symptom 4 and Symptom 5


          0.72  0.18
m5 (AI) =              0.9
             1 0
                    0.06  0.02
m5 (AI, ND, FC) =                0.08             m9 (SHS) =0.1  0.07  0.31
                       1 0                                     1  0.45
m5 (AI, ND, FC, IBRespi, IBRepro, SHS) =                        0.3
                                                   m9 (AI) =           0.55
0.01                                                         1  0.45
      0.01
1 0                                               m9 (ND) =
                                                               0.05
                                                                       0.1
          0.01                                               1  0.45
m5 (Ө) =        0.01                              m9 (ND, SHS) =0.01  0.01  0.04
         1 0                                                        1  0.45
                                                   m9 (AI, ND, FC) = 0.03  0.05
D.    Symptom 4                                                       1  0.45
                                                                                            0.004
   Narrowness of eyes is        a symptom of       m9 (AI, ND, FC, IBRespi, IBRepro, SHS) =          0.01
                                                                                           1  0.45
Swollen Head Syndrome with      a bpa of 0.9, so
that:                                              m9 (Θ) = 0.004  0.01
                                                            1  0.45
m6 (SHS) = 0.9
m6 (Θ) = 1 – 0.9 = 0.1
   We combining symptom         1, symptom 2,
symptom 3, and symptom 4        as seen in the         The most highly bpa value is the m9 (AI)
table 4.                                           that is equal to 0.555 which means the
                                                   possibility of a temporary diseases with
Table 4. Combination of symptom 1, symptom 2,      symptoms of depression, comb, wattle, bluish
symptom 3 and symptom 4                            face region, swollen region face, narrowness
                                                   of eyes, and balance disorders is the Avian
                                                   influenza. Table 6 and figure 2 are shown final
                                                   result of the basic probability assignment and
                                                   graphic of identification from each condition.
Table 6. Final result of basic probability assignment




                                     Fig 2. Poultry diseases in each condition


   Figure 2 shows         the highest basic                   consultation result can be seen in figure 3
probability assignment and the possibility of a               and figure 4.
temporary diseases for each condition. The
highest bpa value for condition 1 and condition
2 are Avian Influenza diseases, condition 3
and condition 4 are Swollen Head Syndrome
diseases, condition 1 is Avian Influenza,
Newcastle Disease, Fowl Cholera, Infectious
Bronchitis    respiratory    form,   Infectious
Bronchitis reproduction form, and Swollen
Head Syndrome. Condition 1, condition 2,
condition 4, and condition 5 need serious
treatment because has basic probability
assignment more than 0.5.

IMPLEMENTATION
   The following will be shown the
working process of system in diagnosing a
case. The consultation process begins with                                Fig 3. Symptoms Selection
selecting the location and symptoms found
on the list of symptoms. In the cases tested,
a known symptom is depression, combs,
wattle, bluish face region, swollen face
region, narrowness of eyes, balance
disorders. The consultation process and
[2]. W.      H.    Assembly.      Strengthening
                                                         pandemic-influenza preparedness and
                                                         response. Resolution WHA58.5, 2005.
                                                    [3]. E. Azziz-Baumgartner, N. Smith, R.
                                                         González-Alvarez, National pandemic
                                                         influenza      preparedness       planning.
                                                         Influenza and Other Respiratory Viruses
                                                         (2009) 189 – 196
                                                    [4]. A. P. Dempster, A Generalization of
                                                         Bayesian inference, Journal of the Royal
                                                         Statistical Society, 1968) 205 – 247
                                                    [5]. G. Shafer, A Mathematical Theory of
                                                         Evidence (Princeton University Press,
                                                         New Jersey, 1976)

            Fig 9. Consultation Result


CONCLUSION
    Detection of poultry diseases can be
performed using Dempster-Shafer Theory. In
this paper we use five symptoms as major
symptoms which include depression, combs,
wattle, bluish face region, swollen face region,
narrowness of eyes, and balance disorders.
The simplest possible method for using
probabilities to quantify the uncertainty in a
database is that of attaching a probability to
every member of a relation, and to use these
values to provide the probability that a
particular value is the correct answer to a
particular query. An expert in providing
knowledge is uncertain in the form of rules with
the possibility, the rules are probability value.
The knowledge is uncertain in the collection of
basic events can be directly used to draw
conclusions in simple cases, however, in many
cases the various events associated with each
other. Reasoning under uncertainty that used
some of mathematical expressions, gave them
a different interpretation: each piece of
evidence (finding) may support a subset
containing several hypotheses. This is a
generalization of the pure probabilistic
framework in which every finding corresponds
to a value of a variable (a single hypothesis).
The result reveal that Dempster-Shafer theory
has successfully identified the existence of
poultry diseases.


REFERENCES
[1]. L. D Sims, J. Domenech, C. Benigno, S.
     Kahn, A. Kamata, J. Lubrouth, V. Martin,
     and P. Roeder, Origin and evolution of
     highly pathogenic H5N1 avian influenza in
     Asia. The Veterinary Record (2005) 159
     – 164.

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Poultry Disease Detection using Dempster-Shafer Theory

  • 1. Poultry Diseases Detection using Dempster-Shafer Theory Andino Maseleno, Md. Mahmud Hasan Department of Computer Science, Faculty of Science, Universiti Brunei Darussalam Jalan Tungku Link, Gadong BE 1410, Negara Brunei Darussalam E-mail: andinomaseleno@yahoo.com, mahmud.hasan@ubd.edu.bn ABSTRACT Based on Cumulative Number of Confirmed Human Cases of Avian Influenza Reported to World Health Organization (WHO) in the 2011 from 15 countries, Indonesia has the largest number death because Avian Influenza which 146 deaths. In this research, we are using Dempster-Shafer Theory for detecting poultry diseases and displaying the result of detection process. In this paper we use five symptoms as major symptoms which include depression, combs, wattle, bluish face region, swollen face region, narrowness of eyes, and balance disorders. Dempster-Shafer theory to quantify the degree of belief, our approach uses Dempster-Shafer theory to combine beliefs under conditions of uncertainty and ignorance, and allows quantitative measurement of the belief and plausibility in our identification result. The result reveal that Dempster-Shafer theory has successfully identified the existence of poultry diseases. Keywords: poultry diseases; detection; Dempster-Shafer theory INTRODUCTION rate in developing countries compared with The demand for chicken meat has been more developed countries [3]. increasing because it has become cheaper The remainder is organized as follows. The relative to other meats The term poultry refers Dempster-Shafer theory is briefly reviewed in to domesticated fowl raised for meat or eggs. Section 2. The experimental results are The poultry industry is dominated by the presented in Section 3, and final remarks are chicken companies, development of poultry concluded in Section 4. population and poultry industry is very rapidly threatened by the presence of poultry disease. DEMPSTER-SHAFER THEORY Disease is defined as a departure from health, The Dempster-Shafer theory was first and includes any condition that impairs normal introduced by Dempster [4] and then extended body functions. Disease results from a by shafer [5], but the kind of reasoning the combination of indirect causes that reduce theory uses can be found as far back as the resistance or predispose an animal to catching seventeenth century. This theory is actually an a disease, as well as the direct causes that extension to classic probabilistic uncertainty produce the disease. modeling. Whereas the Bayesian theory Avian influenza virus, which has been requires probabilities for each question of limited to poultry, now has spread to migrating interest, belief functions allow us to base birds and has emerged in mammals and degrees of belief for on question on among the human population. It presents a probabilities for a related question. distinct threat of a pandemic for which the The consultation process begins with World Health Organization and other selecting symptoms. If there are symptoms organizations are making preparations [1]. In then will calculate, The Dempster-Shafer 2005, the World Health Assembly urged its theory provides a rule to combine evidences Member States to develop national from independent observers and into a single preparedness plans for pandemic influenza [2]. and more informative hint. Evidence theory is Developing countries face particular planning based on belief function and plausible and other challenges with pandemic reasoning. First of all, we must define a frame preparedness as there may be a higher death of discernment, indicated by the sign Θ . The Θ sign 2 indicates the set composed of all the
  • 2. subset generated by the frame of discernment. (3) For a hypothesis set, denoted by A, m(A)→[0,1]. Where m( )=0 (4) (1) ∅ is the sign of an empty set. The function m is the basic probability assignment. Dempster's Flowchart of poultry diseases detection shown rule of combination combines two independent in Figure 1. Table 1 shown basic probability sets of mass assignments. assignment of symptom from each condition. (∅) = 0 (2) Table 1. Basic probability assignment of symptom A. Symptom 1 Start Depression is a symptom of Avian Influenza (AI), Newcastle Disease (ND), Fowl Cholera (FC), Infectious Bronchitis respiratory Yes form (IBRespi), Infectious Bronchitis Input Symptoms m1 (B) m2 (C) reproduction form (IBRepro), and Swollen Head Syndrome (SHS). The measures of uncertainty, taken collectively are known in No Dempster Shafer Theory terminology as a ``basic probability assignment'' (bpa). Hence m (A) = 1 we have a bpa, say m 1 of 0.7 given to the focal element {AI, ND, FC, IBRespi, IBRepro, SHS} in example, m1({AI, ND, FC, IBRespi, IBRepro, SHS}) = 0.7, since we know nothing about the End remaining probability it is allocated to the whole of the frame of the discernment in Fig 1. Flowchart of Poultry Diseases Detection example, m1({AI, ND, FC, IBRespi, IBRepro, SHS}) = 0.3, so: The following will be shown implementation m1{AI, ND, FC, IBRespi, IBRepro, SHS} = 0.7 of the Dempster-Shafer theory to diagnose m1{Θ} = 1 - 0.7 = 0.3 poultry diseases. Symptoms: B. Symptom 2 1. Depression Combs, wattle, bluish face region are 2. Combs, wattle, bluish face region symptoms of Avian Influenza with a bpa of 0.9, 3. Swollen face region so that: 4. Narrowness of eyes m2{AI} = 0.9 5. Balance disorders m2 {Θ} = 1 – 0.9 = 0.1 We combining symptom 1, and symptom 2 as seen in the table 2.
  • 3. Table 2. Combination of symptom 1 and symptom 2 0.01  0.01 m7 (SHS) =  0.17 1  (0.81  0.07) 0.09 m7 (AI) =  0.75 1  (0.81  0.07) 0.63  0.27 0.01 m3 (AI) =  0.9 m7 (AI, ND, FC) =  0.08 1 0 1  (0.81  0.07) m3 (AI, ND, FC, IBRespi, IBRepro, SHS) = m7 (AI, ND, FC, IBRespi, IBRepro, SHS) = 0.07  0.07 0.001 1 0  0.01 1  (0.81  0.07) 0.03 m3 (Θ) =  0.03 0.001 1 0 m7 (Θ) =  0.01 1  (0.81  0.07) C. Symptom 3 Swollen face region is a symptom of Avian E. Symptom 5 Influenza, Newcastle Disease, Fowl Cholera Balance disorders is a symptom of with a bpa of 0.8, so that Newcastle Diseases and Swollen Head m4 {AI, ND, FC} = 0.8 Syndrome with a bpa of 0.6, so that: m4 (Θ) = 1 – 0.8= 0.2 m8 {ND,SHS} = 0.6 We combining symptom 1, symptom 2, and m8 {Θ} = 1 - 0.6 = 0.4 symptom 3 as seen in the table 3. We combining symptom 1, symptom 2, symptom 3, symptom 4 and symptom 5 as Table 3. Combination of symptom 1, symptom 2, seen in the table 5. and symptom 3 Table 5. Combination of Symptom 1, Symptom 2, Symptom 3, Symptom 4 and Symptom 5 0.72  0.18 m5 (AI) =  0.9 1 0 0.06  0.02 m5 (AI, ND, FC) =  0.08 m9 (SHS) =0.1  0.07  0.31 1 0 1  0.45 m5 (AI, ND, FC, IBRespi, IBRepro, SHS) = 0.3 m9 (AI) =  0.55 0.01 1  0.45  0.01 1 0 m9 (ND) = 0.05  0.1 0.01 1  0.45 m5 (Ө) =  0.01 m9 (ND, SHS) =0.01  0.01  0.04 1 0 1  0.45 m9 (AI, ND, FC) = 0.03  0.05 D. Symptom 4 1  0.45 0.004 Narrowness of eyes is a symptom of m9 (AI, ND, FC, IBRespi, IBRepro, SHS) =  0.01 1  0.45 Swollen Head Syndrome with a bpa of 0.9, so that: m9 (Θ) = 0.004  0.01 1  0.45 m6 (SHS) = 0.9 m6 (Θ) = 1 – 0.9 = 0.1 We combining symptom 1, symptom 2, symptom 3, and symptom 4 as seen in the The most highly bpa value is the m9 (AI) table 4. that is equal to 0.555 which means the possibility of a temporary diseases with Table 4. Combination of symptom 1, symptom 2, symptoms of depression, comb, wattle, bluish symptom 3 and symptom 4 face region, swollen region face, narrowness of eyes, and balance disorders is the Avian influenza. Table 6 and figure 2 are shown final result of the basic probability assignment and graphic of identification from each condition.
  • 4. Table 6. Final result of basic probability assignment Fig 2. Poultry diseases in each condition Figure 2 shows the highest basic consultation result can be seen in figure 3 probability assignment and the possibility of a and figure 4. temporary diseases for each condition. The highest bpa value for condition 1 and condition 2 are Avian Influenza diseases, condition 3 and condition 4 are Swollen Head Syndrome diseases, condition 1 is Avian Influenza, Newcastle Disease, Fowl Cholera, Infectious Bronchitis respiratory form, Infectious Bronchitis reproduction form, and Swollen Head Syndrome. Condition 1, condition 2, condition 4, and condition 5 need serious treatment because has basic probability assignment more than 0.5. IMPLEMENTATION The following will be shown the working process of system in diagnosing a case. The consultation process begins with Fig 3. Symptoms Selection selecting the location and symptoms found on the list of symptoms. In the cases tested, a known symptom is depression, combs, wattle, bluish face region, swollen face region, narrowness of eyes, balance disorders. The consultation process and
  • 5. [2]. W. H. Assembly. Strengthening pandemic-influenza preparedness and response. Resolution WHA58.5, 2005. [3]. E. Azziz-Baumgartner, N. Smith, R. González-Alvarez, National pandemic influenza preparedness planning. Influenza and Other Respiratory Viruses (2009) 189 – 196 [4]. A. P. Dempster, A Generalization of Bayesian inference, Journal of the Royal Statistical Society, 1968) 205 – 247 [5]. G. Shafer, A Mathematical Theory of Evidence (Princeton University Press, New Jersey, 1976) Fig 9. Consultation Result CONCLUSION Detection of poultry diseases can be performed using Dempster-Shafer Theory. In this paper we use five symptoms as major symptoms which include depression, combs, wattle, bluish face region, swollen face region, narrowness of eyes, and balance disorders. The simplest possible method for using probabilities to quantify the uncertainty in a database is that of attaching a probability to every member of a relation, and to use these values to provide the probability that a particular value is the correct answer to a particular query. An expert in providing knowledge is uncertain in the form of rules with the possibility, the rules are probability value. The knowledge is uncertain in the collection of basic events can be directly used to draw conclusions in simple cases, however, in many cases the various events associated with each other. Reasoning under uncertainty that used some of mathematical expressions, gave them a different interpretation: each piece of evidence (finding) may support a subset containing several hypotheses. This is a generalization of the pure probabilistic framework in which every finding corresponds to a value of a variable (a single hypothesis). The result reveal that Dempster-Shafer theory has successfully identified the existence of poultry diseases. REFERENCES [1]. L. D Sims, J. Domenech, C. Benigno, S. Kahn, A. Kamata, J. Lubrouth, V. Martin, and P. Roeder, Origin and evolution of highly pathogenic H5N1 avian influenza in Asia. The Veterinary Record (2005) 159 – 164.