1. Explorable
Microscopy
Bringing gigapixel imagery to the micro scale
Thursday, July 28, 2011

2. Changing the way
you see
Thursday, July 28, 2011

3. GigaPans are from mars
 (Venus is too cloudy for pictures)
Thursday, July 28, 2011

4. Thursday, July 28, 2011

5. Thursday, July 28, 2011

6. Thursday, July 28, 2011

7. Scanning Electron
Microscope
Thursday, July 28, 2011

8. Thursday, July 28, 2011

9. Thursday, July 28, 2011

10. Context and detail
Thursday, July 28, 2011

11. Thursday, July 28, 2011

12. An eye lash next to a dried blood sample
(intern blood - Molly has turned out to
be useful)
Red blood cells
Thursday, July 28, 2011

13. Thursday, July 28, 2011

14. Thursday, July 28, 2011

15. Eutetramorium
mocquerysi
http://www.gigapan.org/gigapans/28734/
Thursday, July 28, 2011

16. Thursday, July 28, 2011

17. Snow Algae
Thursday, July 28, 2011

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20. Thursday, July 28, 2011

21. Assorted Pollen
Thursday, July 28, 2011

22. 137045 Views
Mentioned on
New Scientist Blog
Thursday, July 28, 2011

23. 400 Images, 280 Megapixels, 287,000 Views!
Thursday, July 28, 2011

24. Over 500,000 views of ants!
When people can explore GigaPans
Text
they (sometimes) start to care.
Thursday, July 28, 2011

25. Sweeter than Ants
Text
From left to right the sweeteners are Equal (dextrose, maltodextrin, and aspartame), Splenda (dextrose,
maltodextrin, and sucralose), Sugar in the raw, and regular table sugar.
Thursday, July 28, 2011

26. Adapt Microscopes
Thursday, July 28, 2011

27. Imaging the Imager
•CCD from a Canon
Powershot at 1000x.
•170 individual
photographs
•380 megapixels
Thursday, July 28, 2011

28. Test/Calibration Area
Pixels!
Thursday, July 28, 2011

29. Flea by
Jay Longson
5,640 images
Thursday, July 28, 2011

30. Thursday, July 28, 2011

31. Thursday, July 28, 2011

32. Thursday, July 28, 2011

33. Gene Cooper
http://GigaMacro.com
Large Mosaic + Focus Stalking =
Huge numbers of images!
Thursday, July 28, 2011

34. Thursday, July 28, 2011

35. Thursday, July 28, 2011

36.  Passion Butterfly
 1,790 individual photographs
 1.37 gigapixels
Thursday, July 28, 2011

37.  Passion Butterfly
 1,790 individual photographs
 1.37 gigapixels
Thursday, July 28, 2011

38. Thursday, July 28, 2011

39. Bees

Bee Frame test http://gigapan.org/gigapans/fullscreen/80976/
Thursday, July 28, 2011

40. Bees
Bee Frame test http://gigapan.org/gigapans/fullscreen/80976/
Thursday, July 28, 2011

41. Bees
Bee Frame test http://gigapan.org/gigapans/fullscreen/80976/
Thursday, July 28, 2011

42. Bees
Bee Frame test http://gigapan.org/gigapans/fullscreen/80976/
Thursday, July 28, 2011

43. Bees
Bee Frame test http://gigapan.org/gigapans/fullscreen/80976/
Thursday, July 28, 2011

44. Time Lapse Bees - Bleeding Edge
 http://timemachine.gigapan.org/wiki/Bees
Thursday, July 28, 2011

45. MakerBot as Imager
Thursday, July 28, 2011

46. MakerBot as Imager
Thursday, July 28, 2011

47. MakerBot as Imager
Thursday, July 28, 2011

48. MakerBot as Imager
Thursday, July 28, 2011

49. MakerBot as Imager
Thursday, July 28, 2011

50. Crab Shell - 200 megapixels, focus stacked, 1,560 images
Thursday, July 28, 2011

51. Thursday, July 28, 2011

52. Thursday, July 28, 2011

53. Thursday, July 28, 2011

54. Thursday, July 28, 2011

55. Thursday, July 28, 2011

56. one thing.
Thursday, July 28, 2011

57. You. Now.
Thursday, July 28, 2011

58. Overview
 What we are doing
 Devices
 Tools and process
 Presentation, interaction
 Gigapixel imagery as Platform
 Exploring Time Series
Thursday, July 28, 2011

59. Scale Independent, Explorable Images
Thursday, July 28, 2011

60. Different Scales
Textile full image by Surangi - 110 megapixels http://gigapan.org/gigapans/64710/
Thursday, July 28, 2011

61. Focus Stacking
 ImageJ http://rsbweb.nih.gov/ij/
- “Like weaponized photoshop” Dan Kaminsky
 Extended Depth of Field Plugin for ImageJ
- http://bigwww.epfl.ch/demo/edf/
 Zerene Stacker (commercial, but good) http://www.zerenesystems.com/
 http://en.wikipedia.org/wiki/Focus_stacking
Thursday, July 28, 2011

62. Focus Stacking
Thursday, July 28, 2011

63. Focus Stacking
Thursday, July 28, 2011

64. Focus Stacking
Thursday, July 28, 2011

65. 12 Bits
Fitz:
Do you want your
board back now?
Thursday, July 28, 2011

66. Focus Stacking - Calibration
Thursday, July 28, 2011

67. Focus Stacking - HD Video
 Resolve 0.5 microns with a 40x objective.
 1080 HD Video = 29.97two megapixel images per second.
 Split the frames
- qt tools by david van brink
- http://omino.com/sw/qt_tools/
 Normal Focus stacking
Thursday, July 28, 2011

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74. Thursday, July 28, 2011

75. Microscope Adapter Kit
Thursday, July 28, 2011

76. Poor Orphans
Thursday, July 28, 2011

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80. Thursday, July 28, 2011

81. Low cost Macro
Thursday, July 28, 2011

82. Thursday, July 28, 2011

83. Thursday, July 28, 2011

84. Thursday, July 28, 2011

85. Devices
 NanoGigapan
 MacroBot
 Jay’s scope at NASA
 Microscope Adapter Kit
 Low Cost Macro
 MakerBot
Thursday, July 28, 2011

86. Presentation/Interaction
 Large images, raw mode, tif
 GigaPan site
 PS2 controller, demo
 Modest Maps viewer
 TMS tiles, open layers
 Share, explore, work with the images
Thursday, July 28, 2011

87. Platform for Gigapixel Applications
 Macro invertebrates http://www.mcaulifferegional.org/Expedition/bioticindex.html
 GigaPan feature annotation tool

Thursday, July 28, 2011

88. Best practices
in using Gigapixel Imagery for Science
 Provide Full Context
 Disclosure
- Time of acquisition
- True color, color calibration
- Scale: tools for measuring scale
- Number of images, resolution
 Raw images: focus stacking and stitching can introduce
artifacts. For computational photography the raw images are
the data.
Thursday, July 28, 2011

89. Best practices
in using Gigapixel Imagery for Science
Provide unprocessed images
Thursday, July 28, 2011

90. Best practices
in using Gigapixel Imagery for Science
Thursday, July 28, 2011

91. When is the next Where.
 Explore and see what you find
 timelapse gigapans
 Time series and tiles
 Snacking
 Particulates
Thursday, July 28, 2011

92. Thursday, July 28, 2011