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Create Automatic DAS Servers with easyDAS

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Bioinformatics Open Source Conference
Bioinformatics Open Source Conference

EasyDAS: Automatic creation of DAS servers (Bernat Gel)

Tecnología
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easyDAS Automatic DAS server creation Bernat Gel Institut de Medicina Predictiva i Personalitzada del Cancer
DAS servers are easy BOSC 2011 esayDAS: Automatic DAS server creation “ Smart clients , dumb servers ” Client Client Client
DAS servers are easy BOSC 2011 esayDAS: Automatic DAS server creation “ Smart clients , dumb servers ” IGB Jalview Dalliance …
DAS servers are easy BOSC 2011 esayDAS: Automatic DAS server creation “ Smart clients , dumb servers ” IGB Jalview Dalliance …
BOSC 2011 esayDAS: Automatic DAS server creation dumb servers ? Internet visible machine Server installation/administration Data storage management Data access layer programming Data uploading DAS servers are easy Many groups lack abilities or facilities
easyDAS to the rescue BOSC 2011 esayDAS: Automatic DAS server creation Client Client Client Data Generator Data File Data File easyDAS datacenter
esayDAS to the rescue BOSC 2011 esayDAS: Automatic DAS server creation Internet visible machine Server installation/administration Data storage management Data access layer programming Data uploading but... Loss of flexibility Less control over the data
What is easyDAS? BOSC 2011 esayDAS: Automatic DAS server creation DB Web Client easyDAS server ProServer Sources LGPL http://code.google.com/p/easydas/
easyDAS interface BOSC 2011 esayDAS: Automatic DAS server creation ,[object Object],[object Object]
easyDAS interface BOSC 2011 esayDAS: Automatic DAS server creation ,[object Object],[object Object]
easyDAS interface BOSC 2011 esayDAS: Automatic DAS server creation ,[object Object],[object Object]
easyDAS interface BOSC 2011 esayDAS: Automatic DAS server creation ,[object Object],[object Object]
A note on private sources BOSC 2011 esayDAS: Automatic DAS server creation
A note on private sources BOSC 2011 esayDAS: Automatic DAS server creation DAS is open Sources marked as private will NOT be listed on the list BUT they are completely public and an accessible
Should I use easyDAS? BOSC 2011 esayDAS: Automatic DAS server creation Limited maximum size for a dataset No hard limit , but will fail if too big Sources with more than a million features Original data on text files Not feasible for base level annotations No access to logs, so no usage statistics No control over the source’s stylesheet
Should I use easyDAS? BOSC 2011 esayDAS: Automatic DAS server creation Small or medium Use easyDAS On text files Needed to be persistent Short-lived or testing
Custom easyDAS 03/03/11 esayDAS: Automatic DAS server creation http://code.google.com/p/easydas/ It is possible to install on your own instittution Right now no documentation on how to do it. Contact us and we’ll try to help!
Questions? BOSC 2011 esayDAS: Automatic DAS server creation http://www.ebi.ac.uk/panda-srv/easydas/ http://code.google.com/p/easydas/

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Create Automatic DAS Servers with easyDAS

  • 1. easyDAS Automatic DAS server creation Bernat Gel Institut de Medicina Predictiva i Personalitzada del Cancer
  • 2. DAS servers are easy BOSC 2011 esayDAS: Automatic DAS server creation “ Smart clients , dumb servers ” Client Client Client
  • 3. DAS servers are easy BOSC 2011 esayDAS: Automatic DAS server creation “ Smart clients , dumb servers ” IGB Jalview Dalliance …
  • 4. DAS servers are easy BOSC 2011 esayDAS: Automatic DAS server creation “ Smart clients , dumb servers ” IGB Jalview Dalliance …
  • 5. BOSC 2011 esayDAS: Automatic DAS server creation dumb servers ? Internet visible machine Server installation/administration Data storage management Data access layer programming Data uploading DAS servers are easy Many groups lack abilities or facilities
  • 6. easyDAS to the rescue BOSC 2011 esayDAS: Automatic DAS server creation Client Client Client Data Generator Data File Data File easyDAS datacenter
  • 7. esayDAS to the rescue BOSC 2011 esayDAS: Automatic DAS server creation Internet visible machine Server installation/administration Data storage management Data access layer programming Data uploading but... Loss of flexibility Less control over the data
  • 8. What is easyDAS? BOSC 2011 esayDAS: Automatic DAS server creation DB Web Client easyDAS server ProServer Sources LGPL http://code.google.com/p/easydas/
  • 9.
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  • 13. A note on private sources BOSC 2011 esayDAS: Automatic DAS server creation
  • 14. A note on private sources BOSC 2011 esayDAS: Automatic DAS server creation DAS is open Sources marked as private will NOT be listed on the list BUT they are completely public and an accessible
  • 15. Should I use easyDAS? BOSC 2011 esayDAS: Automatic DAS server creation Limited maximum size for a dataset No hard limit , but will fail if too big Sources with more than a million features Original data on text files Not feasible for base level annotations No access to logs, so no usage statistics No control over the source’s stylesheet
  • 16. Should I use easyDAS? BOSC 2011 esayDAS: Automatic DAS server creation Small or medium Use easyDAS On text files Needed to be persistent Short-lived or testing
  • 17. Custom easyDAS 03/03/11 esayDAS: Automatic DAS server creation http://code.google.com/p/easydas/ It is possible to install on your own instittution Right now no documentation on how to do it. Contact us and we’ll try to help!
  • 18. Questions? BOSC 2011 esayDAS: Automatic DAS server creation http://www.ebi.ac.uk/panda-srv/easydas/ http://code.google.com/p/easydas/

Notas del editor

  1. Quite a few on client-side Some on server: MyDAS Proserver Dazzle JDAS
  2. And those small independent groups are, by no means, biological groups. We are losing the oportunity of taking advantage of high quality, hand curated, biologically relevant data simply because the groups producing it don’t know how to make it accessible.