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Björn Brembs
Universität Regensburg
  http://brembs.net
What is the problem?
An antiquated scientific infrastructure
A technically easy solution…
..but with numerous political roadblocks
Example of a major political roadblock
Björn Brembs
Universität Regensburg
  http://brembs.net
Dysfunctional scholarly
literature
• Limited access
• Limited access
• No global search
• Limited access
• No global search
• No hyperlinks
•   Limited access
•   No global search
•   No hyperlinks
•   No data visualization
•   Limited access
•   No global search
•   No hyperlinks
•   No data visualization
•   No submission
    standards
• Limited access
• No global search
• No hyperlinks
• No data visualization
• No submission
  standards
• (Almost) no statistics
• Limited access
• No global search
• No hyperlinks
• No data visualization
• No submission
  standards
• (Almost) no statistics
• No text/data-mining
• Limited access
• No global search
• No hyperlinks
• No data visualization
• No submission
  standards
• (Almost) no statistics
• No text/data-mining
• No effective way to
  sort, filter and discover
•   Limited access
                 •   No global search
                 •   No hyperlinks
                 •   No data visualization
                 •   No submission
                     standards
                 •   (Almost) no statistics
                 •   No text/data-mining
                 •   No effective way to
                     sort, filter and discover
…it’s like the   •   No scientific impact
                     analysis
web in 1995!     •   No networking feature
                 •   etc.
Scientific data in peril
Non-existent software
archives
Technically feasible today (almost)

• No more corporate publishers – libraries
  archive everything and make it publicly
  accessible according to a world-wide
  standard

• Single semantic, decentralized database
  of literature, data and software
Source Normalized Impact per Paper




      •   Thomson Reuters: Impact Factor
      •   Eigenfactor (now Thomson Reuters)
      •   ScImago JournalRank (SJR)
      •   Scopus: SNIP, SJR
Only read publications from high-ranking journals
Publikationstätigkeit
(vollständige Publikationsliste, darunter Originalarbeiten als Erstautor/in,
Seniorautor/in, Impact-Punkte insgesamt und in den letzten 5 Jahren,
darunter jeweils gesondert ausgewiesen als Erst- und Seniorautor/in,
persönlicher Scientific Citations Index (SCI, h-Index nach Web of
Science) über alle Arbeiten)




Publications:
Complete list of publications, including original research papers as first
author, senior author, impact points total and in the last 5 years, with
marked first and last-authorships, personal Scientific Citations Index
(SCI, h-Index according to Web of Science) for all publications.
Only read publications from high-ranking journals
Only publish in high-ranking journals
Lies, damn lies and
bibliometrics
• Who knows what the IF is?
• Who uses the IF to pick a journal
  (rate a candidate, etc.)?
• Who knows how the IF is calculated
  and from what data?
Introduced in 1950’s by Eugene Garfield: ISI


                                                           citations
                                               C12         published

articles           A1                                          time
published                        A2

                  year 1        year 2        year 3
Introduced in 1950’s by Eugene Garfield: ISI


                                                           citations
                                              100          published

articles           40                                          time
published                        60

                  year 1        year 2        year 3
Journal X IF 2010=


 All citations from TR indexed journals in 2012 to papers in journal X

    Number of citable articles published in journal X in 20010/11




      €30,000-130,000/year subscription rates
  Covers ~11,500 journals (Scopus covers ~16,500)
• Negotiable


• Irreproducible


• Mathematically
  unsound
• PLoS Medicine, IF 2-11 (8.4)
 (The PLoS Medicine Editors (2006) The Impact Factor Game. PLoS Med 3(6): e291.
 http://www.plosmedicine.org/article/info:doi/10.1371%2Fjournal.pmed.0030291)




• Current Biology IF from 7 to 11 in
  2003
  – Bought by Cell Press (Elsevier) in 2001…
• Rockefeller University Press bought their
      data from Thomson Reuters
    • Up to 19% deviation from published records
    • Second dataset still not correct




Rossner M, van Epps H, Hill E (2007): Show
me the data. The Journal of Cell Biology, Vol.
179, No. 6, 1091-1092
http://jcb.rupress.org/cgi/content/full/179/6/1091
• Left-skewed distributions
      • Weak correlation of individual article citation
        rate with journal IF




Seglen PO (1997): Why the impact factor of journals should not be used for evaluating research. BMJ 1997;314(7079):497 (15 February)
http://www.bmj.com/cgi/content/full/314/7079/497
The weakening relationship between the Impact Factor and papers' citations in the digital age (2012): George A.
Lozano, Vincent Lariviere, Yves Gingras arXiv:1205.4328
Munafò, M., Stothart, G., & Flint, J. (2009). Bias in genetic association studies and impact factor Molecular
Psychiatry, 14 (2), 119-120 DOI: 10.1038/mp.2008.77
Data from: Fang, F., & Casadevall, A. (2011). RETRACTED SCIENCE AND THE RETRACTION INDEX Infection and Immunity DOI: 10.1128/IAI.05661-11
Fang et al. (2012): Misconduct accounts for the majority of retracted scientific publications. PNAS 109 no. 42 17028-17033
"Not everything that can be counted
counts, and not everything that
counts can be counted."
Where you publish is more
important to us than what you
publish!
Corporate publishers‘ profits
can easily finance all reforms


Image source: http://www.flickr.com/photos/wakingtiger/3156791383/sizes/m/in/photostream/
KIT Library
                    10 Most expensive journal subscriptions 2010/11
Journal                                                 Price [€/a]       Publisher
Biochimica et Biophysica Acta                                 19,130.53 Elsevier
Chemical Physics Letters                                      15,577.06 Elsevier
Journal of Organometallic Chemistry                           13,664.97 Elsevier
Journal of Radioanalytical and Nuclear Chemistry              13,381.07 Springer
Nuclear Instruments & Methods in Physics Research / A         11,958.32 Elsevier
Surface Science                                               11,796.75 Elsevier
Inorganica Chimica Acta                                       10,703.21 Elsevier
Journal of Mathematical Analysis and Applications             10,692.75 Elsevier
Journal of Coordination Chemistry                             10,314.92 Taylor & Francis
Journal of Magnetism and Magnetic Materials                   10,047.30 Elsevier
Total top ten:                                               127,266.88


           http://www.bibliothek.kit.edu/cms/teuerste-zeitschriften.php
4b € per year for 10,000 university libraries:
      400,000 € per year per library

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The three infrastructure crises in science

  • 2. What is the problem?
  • 3. An antiquated scientific infrastructure
  • 4. A technically easy solution…
  • 5. ..but with numerous political roadblocks
  • 6. Example of a major political roadblock
  • 10. • Limited access • No global search
  • 11. • Limited access • No global search • No hyperlinks
  • 12. Limited access • No global search • No hyperlinks • No data visualization
  • 13. Limited access • No global search • No hyperlinks • No data visualization • No submission standards
  • 14. • Limited access • No global search • No hyperlinks • No data visualization • No submission standards • (Almost) no statistics
  • 15. • Limited access • No global search • No hyperlinks • No data visualization • No submission standards • (Almost) no statistics • No text/data-mining
  • 16. • Limited access • No global search • No hyperlinks • No data visualization • No submission standards • (Almost) no statistics • No text/data-mining • No effective way to sort, filter and discover
  • 17. Limited access • No global search • No hyperlinks • No data visualization • No submission standards • (Almost) no statistics • No text/data-mining • No effective way to sort, filter and discover …it’s like the • No scientific impact analysis web in 1995! • No networking feature • etc.
  • 19.
  • 20.
  • 21.
  • 22.
  • 24.
  • 25.
  • 26. Technically feasible today (almost) • No more corporate publishers – libraries archive everything and make it publicly accessible according to a world-wide standard • Single semantic, decentralized database of literature, data and software
  • 27.
  • 28.
  • 29.
  • 30. Source Normalized Impact per Paper • Thomson Reuters: Impact Factor • Eigenfactor (now Thomson Reuters) • ScImago JournalRank (SJR) • Scopus: SNIP, SJR
  • 31. Only read publications from high-ranking journals
  • 32.
  • 33. Publikationstätigkeit (vollständige Publikationsliste, darunter Originalarbeiten als Erstautor/in, Seniorautor/in, Impact-Punkte insgesamt und in den letzten 5 Jahren, darunter jeweils gesondert ausgewiesen als Erst- und Seniorautor/in, persönlicher Scientific Citations Index (SCI, h-Index nach Web of Science) über alle Arbeiten) Publications: Complete list of publications, including original research papers as first author, senior author, impact points total and in the last 5 years, with marked first and last-authorships, personal Scientific Citations Index (SCI, h-Index according to Web of Science) for all publications.
  • 34. Only read publications from high-ranking journals
  • 35. Only publish in high-ranking journals
  • 36. Lies, damn lies and bibliometrics
  • 37. • Who knows what the IF is? • Who uses the IF to pick a journal (rate a candidate, etc.)? • Who knows how the IF is calculated and from what data?
  • 38. Introduced in 1950’s by Eugene Garfield: ISI citations C12 published articles A1 time published A2 year 1 year 2 year 3
  • 39. Introduced in 1950’s by Eugene Garfield: ISI citations 100 published articles 40 time published 60 year 1 year 2 year 3
  • 40. Journal X IF 2010= All citations from TR indexed journals in 2012 to papers in journal X Number of citable articles published in journal X in 20010/11 €30,000-130,000/year subscription rates Covers ~11,500 journals (Scopus covers ~16,500)
  • 41. • Negotiable • Irreproducible • Mathematically unsound
  • 42. • PLoS Medicine, IF 2-11 (8.4) (The PLoS Medicine Editors (2006) The Impact Factor Game. PLoS Med 3(6): e291. http://www.plosmedicine.org/article/info:doi/10.1371%2Fjournal.pmed.0030291) • Current Biology IF from 7 to 11 in 2003 – Bought by Cell Press (Elsevier) in 2001…
  • 43.
  • 44.
  • 45. • Rockefeller University Press bought their data from Thomson Reuters • Up to 19% deviation from published records • Second dataset still not correct Rossner M, van Epps H, Hill E (2007): Show me the data. The Journal of Cell Biology, Vol. 179, No. 6, 1091-1092 http://jcb.rupress.org/cgi/content/full/179/6/1091
  • 46. • Left-skewed distributions • Weak correlation of individual article citation rate with journal IF Seglen PO (1997): Why the impact factor of journals should not be used for evaluating research. BMJ 1997;314(7079):497 (15 February) http://www.bmj.com/cgi/content/full/314/7079/497
  • 47. The weakening relationship between the Impact Factor and papers' citations in the digital age (2012): George A. Lozano, Vincent Lariviere, Yves Gingras arXiv:1205.4328
  • 48. Munafò, M., Stothart, G., & Flint, J. (2009). Bias in genetic association studies and impact factor Molecular Psychiatry, 14 (2), 119-120 DOI: 10.1038/mp.2008.77
  • 49. Data from: Fang, F., & Casadevall, A. (2011). RETRACTED SCIENCE AND THE RETRACTION INDEX Infection and Immunity DOI: 10.1128/IAI.05661-11
  • 50. Fang et al. (2012): Misconduct accounts for the majority of retracted scientific publications. PNAS 109 no. 42 17028-17033
  • 51. "Not everything that can be counted counts, and not everything that counts can be counted."
  • 52.
  • 53. Where you publish is more important to us than what you publish!
  • 54.
  • 55. Corporate publishers‘ profits can easily finance all reforms Image source: http://www.flickr.com/photos/wakingtiger/3156791383/sizes/m/in/photostream/
  • 56. KIT Library 10 Most expensive journal subscriptions 2010/11 Journal Price [€/a] Publisher Biochimica et Biophysica Acta 19,130.53 Elsevier Chemical Physics Letters 15,577.06 Elsevier Journal of Organometallic Chemistry 13,664.97 Elsevier Journal of Radioanalytical and Nuclear Chemistry 13,381.07 Springer Nuclear Instruments & Methods in Physics Research / A 11,958.32 Elsevier Surface Science 11,796.75 Elsevier Inorganica Chimica Acta 10,703.21 Elsevier Journal of Mathematical Analysis and Applications 10,692.75 Elsevier Journal of Coordination Chemistry 10,314.92 Taylor & Francis Journal of Magnetism and Magnetic Materials 10,047.30 Elsevier Total top ten: 127,266.88 http://www.bibliothek.kit.edu/cms/teuerste-zeitschriften.php
  • 57.
  • 58.
  • 59. 4b € per year for 10,000 university libraries: 400,000 € per year per library