4. Adapter trim &
quality filter
Diginorm to C=10
Trim high-
coverage reads at
low-abundance
k-mers
Diginorm to C=5
Partition
graph
Split into "groups"
Reinflate groups
(optional
Assemble!!!
Map reads to
assembly
Too big to
assemble?
Small enough to assemble?
Annotate contigs
with abundances
MG-RAST, etc.
The Kalamazoo Metagenomics Pipeline
4