1. Goal Usage Implementation Availability
Next-generation sequencing
request management system
in Galaxy
Brad Chapman
16 May 2010

2. Goal Usage Implementation Availability
Researchers Sequencing Core
Samples
Analysis

3. Goal Usage Implementation Availability
Sample and request infrastructure

4. Goal Usage Implementation Availability
Functionality
Researcher sample entry
Sequencing tracking and management
Layout of flow cells
Full integration with Galaxy

5. Goal Usage Implementation Availability
Multiple services

6. Goal Usage Implementation Availability
Sample entry

7. Goal Usage Implementation Availability
Organize as projects

8. Goal Usage Implementation Availability
Project based view

9. Goal Usage Implementation Availability
Tracking and management

10. Goal Usage Implementation Availability
Flow cell layout

11. Goal Usage Implementation Availability
Leverages Galaxy infrastructure
Display Database
grids samples
form builder requests
events
form values
Added to database
One relationship table

12. Goal Usage Implementation Availability
Sample request relationships
Next-gen Next-gen
Requests: Sequencing Sequencing
Run 1 Run 2
Sample 2 Sample Sample 3
Library Pre-sequencing Sequencing Sequencing
Requests: Construction
Validation
quantitation
Sequencing
Details results 1 results 2

13. Goal Usage Implementation Availability
Community
Positives Suggestions
Consistent High level update
interface summaries
Excellent backend Internals
Maintainability documentation
Roadmap

14. Goal Usage Implementation Availability
Availability
Repository tracking Galaxy development
http://bitbucket.org/chapmanb/
galaxy-central
Hope to integrate with the main code base