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Pennefather, P. et al.: BioTIFF: An Articulated and Self-Documenting Electronic Personal Health Record ,[object Object],[object Object],[object Object]
BioTIFF: An Articulated and Self-Documenting Electronic Personal Health Record Peter Pennefather and West Suhanic,   Lesley Dan Faculty of Pharmacy, University of Toronto Laboratory for Collaborative Diagnostics  (LCD)‏ Look, Collaborate, Decide www.lcd.utoronto.ca
Laboratory for Collaborative Diagnostics BioTIFF Overview Web 3.0: a Data Web Supporting Distributed Cognition Outline
Laboratory for Collaborative Diagnostics
[object Object],[object Object],[object Object],[object Object],[object Object],Design Challenge:  to create transparent, economical, adaptable, open, participatory, & minimally invasive personal diagnostic and health information processing platforms  platforms that record and communicate case-centric biomedical information in a way that promotes shared understanding and collaborative articulation of knowledge Laboratory for Collaborative Diagnostics  (LCD)‏ Look, Collaborate, Decide www.lcd.utoronto.ca
CIRCLE OF CARE ,[object Object],[object Object],[object Object],[object Object],[object Object],Disease Survivor Intercase OS/BioTIFF owner at center of circle of care HEALTH CARE SYSTEM BioTIFF.   Multiple levels of data and meta data generated by diagnostic events are transformed into pages of an encrypted multi-page TIFF file that serves as a data container. Applications working with this bio-referenced data specification used to create a health narrative that can be managed, indexed, and searched through web-based storage and compute clouds (eg. Amazon)‏ Electronic Medical Record & PACS Quality, Safety, Value Assurance Scholarly, Fundamental, Applied, & Use-Inspired Research Educational, Art & Design, Media, & Infotainment SECONDARY USE THE INTERCASE PROJECT Distributed Processing of Diagnostic Information for the Circle of Care ,[object Object],[object Object],[object Object],[object Object],[object Object],Disease Survivor Intercase OS/BioTiff owner at center of circle of care HEALTH CARE SYSTEM BioTIFF.  Multiple levels of data and meta data generated by diagnostic events are transformed into an encrypted TIFF and aggregated in a multi-page TIFF referenced to bodily structure and function.  Accessed, indexed, and searched through web-based storage and compute clouds (eg. Amazon)‏ Electronic Medical Record & PACS Quality, Safety, Value Assurance Scholarly, Fundamental, Applied, & Use-Inspired Research Educational, Art & Design, Media, & Infotainment SECONDARY USE CIRCLE OF CARE
BioTIFF Overview
What is TIFF? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Multi-Page TIFF File Structure ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],GeoTIFF and BioTIFF
Nature Biotechnology   22 , 1253 - 1259 (2004)  Systems biology in drug discovery  Eugene C Butcher, Ellen L Berg & Eric J Kunkel
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
(Topic)‏ Specific bio-medically definable  (biomarkers, vital signs) health (Context/Community)  diverse stakeholders & caregiver perspectives and sense making (Task)‏ adapting health care system to patient needs BioTIFF will Enable Personal Health Narratives and‏ Collaborative Evaluation of Health Care Trajectory
Web 3.0: a Data Web supporting Distributed Cognition
Web 1.0 Web 2.0 Web 3.0 1990-2000 2000-2010 2010-2020 Read Write Web Social Web Semantic We b Gustini, 2008 Cho and Gustini 2008, JCHLA/JABJSC 29: 13-18
Knowledge Translation Framework Learning Problem Solving  Diagnostics Discovery Comprehension Discovery  Initiation (codification) Application  Definition  Sensing Dialogue Analysis  Design  Analysis (abstraction) Synthesis  Decision Making  Diagnosis‏ Distribution Evaluation  Action Planning  Reporting (diffusion)‏ Web 3.0*  A Collaborative, Interpretive, Dialogical, Data Web Leading to Shared Understanding (Distributed Cognition)‏
Data Web services built on  articulated information sources with trusted provenance will enable distributed cognition based on knowing : - what the care is about  (identity/representation) (codification)‏ - how the care works  (production)   (abstraction)‏ - how the care is used  (consumption/governance) (diffusion)‏ Community of Practice  Circuit of Culture   Information Space (Wenger)   (Du Gay et al.)   (Boisot)‏
CIRCLE OF CARE ,[object Object],[object Object],[object Object],[object Object],[object Object],Disease Survivor Intercase OS/BioTIFF owner at center of circle of care HEALTH CARE SYSTEM BioTIFF.   Multiple levels of data and meta data generated by diagnostic events are transformed into pages of an encrypted multi-page TIFF file that serves as a data container. Applications working with this bio-referenced data specification used to create a health narrative that can be managed, indexed, and searched through web-based storage and compute clouds (eg. Amazon)‏ Electronic Medical Record & PACS Quality, Safety, Value Assurance Scholarly, Fundamental, Applied, & Use-Inspired Research Educational, Art & Design, Media, & Infotainment SECONDARY USE THE INTERCASE PROJECT Distributed Processing of Diagnostic Information for the Circle of Care ,[object Object],[object Object],[object Object],[object Object],[object Object],Disease Survivor Intercase OS/BioTiff owner at center of circle of care HEALTH CARE SYSTEM BioTIFF.  Multiple levels of data and meta data generated by diagnostic events are transformed into an encrypted TIFF and aggregated in a multi-page TIFF referenced to bodily structure and function.  Accessed, indexed, and searched through web-based storage and compute clouds (eg. Amazon)‏ Electronic Medical Record & PACS Quality, Safety, Value Assurance Scholarly, Fundamental, Applied, & Use-Inspired Research Educational, Art & Design, Media, & Infotainment SECONDARY USE CIRCLE OF CARE
Personalized Narrative Diagnostic Imaging: Can it Mediate Patient/System Dialogue An extension of medical imaging systems to supplement biophysical data with socio-technical data concerning the patients experience and world view as well as their goals of care ;  Chap 6: Pennefather and Suhanic in: Mediating Health Information The Go-Betweens in a Changing Socio-Technical Landscape  Edited by:  Nadine Wathen, Sally Wyatt and Ronna Harris   http://www.palgrave.com/products/Title.aspx?PID=285092
ISO defines an EHR as “a repository of patient data in digital form, stored and exchanged securely and accessible by multiple authorized users. It contains retrospective, concurrent, and prospective information and its primary purpose is to support continuing, efficient and quality integrated health care”. A  PHR is an EHR where the data in the record is controlled by the patient and contains data at least partially entered by the patient (ISO)‏ National EHR system standards like Health Infoway aim to ensure that EHRs are 1) patient centric and engage/empower patients; 2) share common core information fields  3) use common standards for encoding those fields; 4) are secure and protect participant privacy;  5) are open, transparent, interoperable. They may be: 1) time oriented, 2) source oriented or 3) problem oriented . Can they be Narrative Oriented
Beyond a Record of Healthcare Data – Towards a Narrative of Healthcare Meaning   A key aspect of health care self-management is making sense of and owning personal health care information and data Sense/Meaning/Credibility/Relevance only exist within the context of a community that shares information    An authentic personal narrative of health care meaning is defined dialogically within a community (e.g. the circle of care)‏
Health Care Meaning and PHRs
Records used in problem solving contain: Subjective information ,  Objective information ,  Interpretive Information (e.g assessment/diagnosis/synthesis/conclusion/speculation); Action/Management Plan Information Outcomes Information .
Objective Patient Summary Information Records like CCR contain: history  which can be further divided into;   identity/custody/relationships   administration (admission/referral details, plan, access rights, etc.)‏   past medical history, social history (life style/occupation/social status, e.g. level of poverty),   stage of care (acute, chronic, palliative, end-of-life); population parameters  (age, gender, culture, cohort, disabilities, immunities/vaccinations  biological idiosyncrasies [e.g. allergies,, mutations etc]);  test results  (lab med, imaging, physical exam, vital signs, biomarkers, cognitive, social)  active problems/diagnoses ; medications/treatments ,    proscribed (guideline/pathway/label appropriate)‏   non-proscribed/experimental   primary, secondary; assistive/palliative ; alternative/complementary
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Many ways of implementing PHRs and  it is not possible to generalize functionality.  But there are a subset of platform independent ways of evaluating function in terms of : 1) information, system, and service quality (consistency, relevance, completeness, timeliness, accessibility); 2) information accuracy, usability, and applicability 3) user satisfaction/experience; 4) impact at individual and community level Specifications
CT scan for Cancer Brain Tumour
Geography of a Smear of Blood Infected with Malaria Digital Image of Malaria Infected Blood
 
Database for screening effectiveness of Malaria Vaccine
Web 3.0 My Content Screening
 
Consumer / Patient Biomedical Researchers Science 2.0 Peer-review 2.0 Personal Health Record 2.0 Virtual Communities (peer-to-peer)‏ Professional Communities (peer-to-peer)‏ Health 2.0 HealthVault Google Health HealthBook  Sermo WebCite CiteULike MDPIXX WiserWiki eDoctr BioWizard Dissect Medicine E-learning PLoS One BMC JMIR Wikis Blogs RSS RDF, Semantic Web Virtual Worlds Web 2.0 Technologies & Approaches Apomediation Participation Social Networking Collaboration XML AJAX Openess Revolution Health PatientsLikeMe PeerClip Connotea ALIVE HealthMap caBIG Health Professionals Medicine 2.0  (“next generation medicine”) Gunther Eysenbach. Medicine 2.0. J Med Internet Res 2008 (in press) http://dx.doi.org/ 10.2196/jmir.1030  DOI:10.2196/jmir.1030 The Future
 
Three articulated dimensions of  information significance (work structures)‏ Collaborative (subject)‏ Client Tacit (community )‏ Cognitive (objectives) )‏ (rules)‏ Explicit Server (instruments)‏ Client Server Collaborative Cognitive
PHRs as Anchors for Communities of Practice that Create a Web of Relationships Leading to Knowing in Actions From: Ash and Roberts, (2008) Knowing in Action: Beyond communities of practice,  Health Policy  37:353-369
Dimension PRECEDENCE       VALIDITY   MATURITY (guidance/topic)   (perspectives/context) (options/task)‏ Domains Authenticity Source Warrant  Dialogical Validity Collaborative Maturity ( Taylor)‏ Credibility  Credentials/Expertise   Quality    Impact/Trustworthy (OGrady )  Relevance Perceived Usefulness   Perceived Usability  Perceived Applicability ( Pennefather & Jones ) (Germane)       (Material) (Actionability‏)‏ Source Shutz  Topical   Interpretational   Motivational Wenger    What is it about?   How it functions?   How can it be used? Spender    Meaning   Data   Practice Maron    Subjective About   Objective About Retrieval About Thomas    Ontological   Epistemological Methodological Amin & Roberts   Professional   Epistemic/Creative Craft/Task based  Dimensions and Domains of Information Sense analogies with other knowledge dimension models
Canadian Pillars of  Primary Health Care Reform www.primaryhealthcare.ca ,[object Object],[object Object],[object Object],[object Object]
US Dimensions of  Primary Health Care Reform http://www.iom.edu/CMS/8089.aspx ,[object Object],[object Object],[object Object],[object Object],[object Object]
September 3, 2008 Map India 2003, New Delhi GeoTIFF Specific Additional Tags ,[object Object],[object Object],[object Object]
 

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BioTIFF: An Articulated and Self-Documenting Electronic Personal Health Record [04 Cr2 1130 Pennefather]

  • 1.
  • 2. BioTIFF: An Articulated and Self-Documenting Electronic Personal Health Record Peter Pennefather and West Suhanic, Lesley Dan Faculty of Pharmacy, University of Toronto Laboratory for Collaborative Diagnostics (LCD)‏ Look, Collaborate, Decide www.lcd.utoronto.ca
  • 3. Laboratory for Collaborative Diagnostics BioTIFF Overview Web 3.0: a Data Web Supporting Distributed Cognition Outline
  • 5.
  • 6.
  • 8.
  • 9.
  • 10.
  • 11. Nature Biotechnology 22 , 1253 - 1259 (2004) Systems biology in drug discovery Eugene C Butcher, Ellen L Berg & Eric J Kunkel
  • 12.
  • 13. (Topic)‏ Specific bio-medically definable (biomarkers, vital signs) health (Context/Community) diverse stakeholders & caregiver perspectives and sense making (Task)‏ adapting health care system to patient needs BioTIFF will Enable Personal Health Narratives and‏ Collaborative Evaluation of Health Care Trajectory
  • 14. Web 3.0: a Data Web supporting Distributed Cognition
  • 15. Web 1.0 Web 2.0 Web 3.0 1990-2000 2000-2010 2010-2020 Read Write Web Social Web Semantic We b Gustini, 2008 Cho and Gustini 2008, JCHLA/JABJSC 29: 13-18
  • 16. Knowledge Translation Framework Learning Problem Solving Diagnostics Discovery Comprehension Discovery Initiation (codification) Application Definition Sensing Dialogue Analysis Design Analysis (abstraction) Synthesis Decision Making Diagnosis‏ Distribution Evaluation Action Planning Reporting (diffusion)‏ Web 3.0* A Collaborative, Interpretive, Dialogical, Data Web Leading to Shared Understanding (Distributed Cognition)‏
  • 17. Data Web services built on articulated information sources with trusted provenance will enable distributed cognition based on knowing : - what the care is about (identity/representation) (codification)‏ - how the care works (production) (abstraction)‏ - how the care is used (consumption/governance) (diffusion)‏ Community of Practice Circuit of Culture Information Space (Wenger) (Du Gay et al.) (Boisot)‏
  • 18.
  • 19. Personalized Narrative Diagnostic Imaging: Can it Mediate Patient/System Dialogue An extension of medical imaging systems to supplement biophysical data with socio-technical data concerning the patients experience and world view as well as their goals of care ; Chap 6: Pennefather and Suhanic in: Mediating Health Information The Go-Betweens in a Changing Socio-Technical Landscape Edited by: Nadine Wathen, Sally Wyatt and Ronna Harris http://www.palgrave.com/products/Title.aspx?PID=285092
  • 20. ISO defines an EHR as “a repository of patient data in digital form, stored and exchanged securely and accessible by multiple authorized users. It contains retrospective, concurrent, and prospective information and its primary purpose is to support continuing, efficient and quality integrated health care”. A PHR is an EHR where the data in the record is controlled by the patient and contains data at least partially entered by the patient (ISO)‏ National EHR system standards like Health Infoway aim to ensure that EHRs are 1) patient centric and engage/empower patients; 2) share common core information fields 3) use common standards for encoding those fields; 4) are secure and protect participant privacy; 5) are open, transparent, interoperable. They may be: 1) time oriented, 2) source oriented or 3) problem oriented . Can they be Narrative Oriented
  • 21. Beyond a Record of Healthcare Data – Towards a Narrative of Healthcare Meaning   A key aspect of health care self-management is making sense of and owning personal health care information and data Sense/Meaning/Credibility/Relevance only exist within the context of a community that shares information   An authentic personal narrative of health care meaning is defined dialogically within a community (e.g. the circle of care)‏
  • 23. Records used in problem solving contain: Subjective information , Objective information , Interpretive Information (e.g assessment/diagnosis/synthesis/conclusion/speculation); Action/Management Plan Information Outcomes Information .
  • 24. Objective Patient Summary Information Records like CCR contain: history which can be further divided into; identity/custody/relationships administration (admission/referral details, plan, access rights, etc.)‏ past medical history, social history (life style/occupation/social status, e.g. level of poverty), stage of care (acute, chronic, palliative, end-of-life); population parameters (age, gender, culture, cohort, disabilities, immunities/vaccinations biological idiosyncrasies [e.g. allergies,, mutations etc]); test results (lab med, imaging, physical exam, vital signs, biomarkers, cognitive, social) active problems/diagnoses ; medications/treatments , proscribed (guideline/pathway/label appropriate)‏ non-proscribed/experimental primary, secondary; assistive/palliative ; alternative/complementary
  • 25.
  • 26. Many ways of implementing PHRs and it is not possible to generalize functionality. But there are a subset of platform independent ways of evaluating function in terms of : 1) information, system, and service quality (consistency, relevance, completeness, timeliness, accessibility); 2) information accuracy, usability, and applicability 3) user satisfaction/experience; 4) impact at individual and community level Specifications
  • 27. CT scan for Cancer Brain Tumour
  • 28. Geography of a Smear of Blood Infected with Malaria Digital Image of Malaria Infected Blood
  • 29.  
  • 30. Database for screening effectiveness of Malaria Vaccine
  • 31. Web 3.0 My Content Screening
  • 32.  
  • 33. Consumer / Patient Biomedical Researchers Science 2.0 Peer-review 2.0 Personal Health Record 2.0 Virtual Communities (peer-to-peer)‏ Professional Communities (peer-to-peer)‏ Health 2.0 HealthVault Google Health HealthBook Sermo WebCite CiteULike MDPIXX WiserWiki eDoctr BioWizard Dissect Medicine E-learning PLoS One BMC JMIR Wikis Blogs RSS RDF, Semantic Web Virtual Worlds Web 2.0 Technologies & Approaches Apomediation Participation Social Networking Collaboration XML AJAX Openess Revolution Health PatientsLikeMe PeerClip Connotea ALIVE HealthMap caBIG Health Professionals Medicine 2.0 (“next generation medicine”) Gunther Eysenbach. Medicine 2.0. J Med Internet Res 2008 (in press) http://dx.doi.org/ 10.2196/jmir.1030 DOI:10.2196/jmir.1030 The Future
  • 34.  
  • 35. Three articulated dimensions of information significance (work structures)‏ Collaborative (subject)‏ Client Tacit (community )‏ Cognitive (objectives) )‏ (rules)‏ Explicit Server (instruments)‏ Client Server Collaborative Cognitive
  • 36. PHRs as Anchors for Communities of Practice that Create a Web of Relationships Leading to Knowing in Actions From: Ash and Roberts, (2008) Knowing in Action: Beyond communities of practice, Health Policy 37:353-369
  • 37. Dimension PRECEDENCE VALIDITY MATURITY (guidance/topic) (perspectives/context) (options/task)‏ Domains Authenticity Source Warrant Dialogical Validity Collaborative Maturity ( Taylor)‏ Credibility Credentials/Expertise Quality Impact/Trustworthy (OGrady ) Relevance Perceived Usefulness Perceived Usability Perceived Applicability ( Pennefather & Jones ) (Germane) (Material) (Actionability‏)‏ Source Shutz Topical Interpretational Motivational Wenger What is it about? How it functions? How can it be used? Spender Meaning Data Practice Maron Subjective About Objective About Retrieval About Thomas Ontological Epistemological Methodological Amin & Roberts Professional Epistemic/Creative Craft/Task based Dimensions and Domains of Information Sense analogies with other knowledge dimension models
  • 38.
  • 39.
  • 40.
  • 41.