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                                  Collaborating to Beat Cancer

Open Labs - Come and help Cancer Research UK to beat cancer
Imagine a world where 100,000s of people playing a simple game-based app on their
smartphones or social networks or computers were at the same time analysing data and
helping to beat cancer. Think Citizens Science meets Angry Birds.

Together with Cancer Research UK and the Citizens Science Alliance, we’re
delighted to be embarking on an ambitious collaborative Good for
Nothing experiment – Open Labs – taking place at The Science Museum over the
weekend of 18, 19, 20 May.

-------------------------------------------------------------------------------------------------------
Our challenge is to develop a simple, but addictive app with game elements that
would enable hundreds of thousands of supporters in the UK to help beat cancer...
-------------------------------------------------------------------------------------------------------

We want to create something that when playing, will analyse real data, from real
cancer patients, leading to real results and real breakthroughs in the development of
personalised medicine. By analysing data faster, we can get knowledge to doctors
faster, and they in turn can treat people more successfully. Put simply, playing this
game really could save lives.

So what’s happened so far?
To kick things off, Cancer Research UK put out a call to their community of 4000+
research scientists for ideas with the potential to unlock genuine research bottlenecks
and tackle meaningful research challenges

2 different ideas have emerged as 2 of the briefs for our challenge. Chris Lintott and
his team from Citizen Science Alliance are opening up their APIs to help focus a
rapid 48 hour blast of collaborative developing, making and doing.

The 3rd challenge is how to communicate the idea of citizen science for cancer
research to the great British public.

As well as a team of some of the UK and world’s leading cancer research scientists,
Chris will be with us for the weekend, to help bring the massive expertise and
insight they’ve gained from the groundbreaking Galaxy Zoo, Planet Hunters and
rapidly expanding family of Zooniverse projects.


Why citizen science and cancer research?
Personalised treatment is poised to revolutionise cancer treatment.

Every person’s cancer is unique – and their cancer treatment should be too.
Tests that reveal the genetic make-up of a patient’s cancer can help doctors to tailor
the treatment accordingly.
                                                                           	
  
	
  
That means patients will get the RIGHT treatment, first time, with fewer intolerable
side effects which could have a major impact on survival rates
To develop these tests – and the personalised medicine – we need to decode genetic
information. And stunning advances in technology mean we can do this faster than
ever.

But it still requires analysis of huge amounts of genetic data by real people that
cannot be left to computers alone. Analysis that researchers at top universities are
doing every day; looking for patterns, exceptions and abnormalities. This job needs
human intuition and the human eye. And that’s why it takes so much time.

But with the collective power of hundreds of thousands of people, and their eyes, we
could speed up this research by years, and save lives.

-------------------------------------------------------------------------------------------------------
Brief #1: Accelerating pathologists analysis of tumours
-------------------------------------------------------------------------------------------------------

The outline idea
Each year, thousands of patients take part in clinical trials, providing precious
tumour samples - each one offering vital clues as to why a patient’s treatment did or
didn’t work.




A game that ‘scores’ tumour samples on a grid like the one shown would accelerate
this analysis to benefit patients faster.

Each dot above is a tiny tumour sample stained for a specific marker. People would
be asked to score the samples depending on what markers they can see.

A typical trial could generate up to 18,000 of these dots to analyse for up to 20
different markers - a task that will take years without additional help.

By playing the game, you’ll build up a bank of knowledge to help doctors
personalise treatment and transform the outlook for women with breast cancer
                                                                           	
  
	
  
The key issues
There is a genuine backlog of research that upon proper analysis could yield all sorts
of insights and breakthroughs. This would accelerate research and free up scientists
to tackle other less routine issues

There are a number of different ways in which people could analyse tumours
ranging from assessing the colour intensity, to sizing the proportion of tumour
stained to looking for irregularities. In each case, a basic introductory level of
training is needed which would become part of the game/application.

The challenge
The overall challenge is to build a set of prototypes for the app and training module -
using technology, gaming, design, social web and communications expertise to see
what awesome ideas emerge….

What we’re looking for…
  • A game or application with a user interface that has the potential to get
      hundreds of thousands of people engaged and actively helping to get
      through the research backlog
  • Has broad appeal across a wide range of people – from school kids to
      grandparents, not just hardcore gamers
  • Works across platforms (online, mobile)
  • Has a mechanism in it that encourages and rewards involvement/sharing
  • Has a competitive element that makes the whole experience immersive
  • Packaged in a way that makes it easy, fun and engaging
  • Supported by insights into users, scientists and cancer patients

Potential data-sets
We have samples from 3000 women on a landmark breast cancer trial. The trial is
testing the best way to treat women in their 20s and 30s with the disease. This will be
demonstrated as part of the briefings.

Each data set consists of high resolution images that sit on a server to be pulled
forward for analysis. The data exists within an online SQL database as well as a
sample set of data that we’ve put into Dropbox for people to use alongside the CSI
platform API.

Lead scientists
Andy Hanby, Diana Wheeler and Paul Pharoah

-----------------------------------------------------------------------------------------
Brief #2: Accelerating genetic analysis of tumours
-----------------------------------------------------------------------------------------

The outline idea
Every person’s cancer is made up of a unique combination of genetic faults - a
genetic ‘signature’. New technology means we can analyse these genetic signatures
from thousands of patients faster than ever - churning out petabytes of data.
                                                         	
  
	
  
Results like those below, which show changes in the levels of some genes, would
benefit from human analysis in addition to current automated processes.




The data above shows changes in the amount of genetic material. Gamers would be
looking for regions such as the one in the middle where the level changes sharply.

Changes in level across many tumour samples would help to locate important
cancer-causing gene faults. Not all the changes in our genes cause cancer. But by
taking part & spotting the subtleties a computer can’t, you could be the one to find a
breakthrough cancer-causing mutation. It’s a game of chance but the stakes are high.

The key issues
The current mechanism for analysing data is through sophisticated algorithms that
predict the genetic sequence in and around the mutations.

The way the algorithms work means that some important parts of the genetic
sequence in and around the mutations are less accurately predicted.

There is a real need to do more exploratory work on this, as the rate at which data is
being produced, means that adding a human element to the algorithmic analysis
could yield new and important findings.

The challenge
The overall challenge is to build a set of prototypes for the app and training module -
using technology, gaming, design, social web and communications expertise to see
what awesome ideas emerge….

What we’re looking for…
  • A game or application with a user interface that has the potential to get
      hundreds of thousands of people engaged and actively helping to get
      through the research backlog
  • Has broad appeal across a wide range of people – from school kids to
      grandparents, not just hardcore gamers
  • Works across platforms (online, mobile)
  • Has a mechanism in it that encourages and rewards involvement/sharing
  • Has a competitive element that makes the whole experience immersive
                                                                    	
  
	
  
       •   Packaged in a way that makes it easy, fun and engaging
       •   Supported by insights into users, scientists and cancer patients

Potential data-sets
Data exists within the public domain that can be used to build a working prototype.
We will have a set of data available on Dropbox and it will be demonstrated as part
of the briefings.

There are no working standards yet for this type of data – most data sets existing in
BED format or compatible format for viewing in the Integrative Genomics Viewer –
an open source piece of software.

Lead scientist
Andy Lynch

-------------------------------------------------------------------------------------------------------
Brief #3: How do we engage the wider public in the idea of citizen science for cancer
research?
-------------------------------------------------------------------------------------------------------

The idea of citizen science is unique and a relatively new concept for most people
so how do we best communicate it to get the highest possible appeal and uptake?

This is a free-range challenge that we’d love to have people work on to tackle the
issue of communications approach and strategy for this initiative – overall and for
the individual ideas as they start to emerge and develop over the weekend.

The primary audience is the great British public, but given the aim to make this go as
big as possible, how can we best talk to potential technology partners and even other
brands to get them involved in making this happen?

Pro-bono public research into citizen science and cancer research just in gives us
some insights to start from and will be available as input for everyone to use.

We also know that the citizen science community that Chris has built is science
attentive but not specialists e.g. amateur astronomers – they’re curious, educated,
motivated by taking part in research, doing something and making a contribution.

So this brief is really all about immersing ourselves in creating a communications
strategy, approach and supporting assets that will help to accelerate this idea into
execution.

Key questions
Who’s the audience(s) for cancer research citizen science?
For each key audience, what’s the proposition that will hook them to get involved?
What key messages will engage them - both overall and with the specific
application/platform being developed?
How might we best package the idea up visually as a concept/identity?
How do we best communicate/ launch it e.g. in terms of a challenge?
                                                                                               	
  
	
  

Potential outputs
A communications strategy and campaign for citizen science for Cancer Research UK
Supporting assets e.g. vox-pops from potential audience, mash-up films, mood-
film/animation/storyboard, branding ideas and identities, pitch presentations ….etc

-------------------------------------------------------------------------------------------------------
Some stuff to think about for all the challenges….
-------------------------------------------------------------------------------------------------------

Visual	
  engagement	
  
Pictures	
  of	
  galaxies	
  are	
  interesting.	
  Tumour	
  images/genetic	
  profiles	
  maybe	
  less	
  so.	
  	
  
How	
  can	
  we	
  present	
  data	
  in	
  an	
  engaging	
  way	
  to	
  the	
  user?	
  How	
  do	
  we	
  best	
  present	
  
results	
  back	
  to	
  the	
  users?	
  How	
  do	
  we	
  best	
  present	
  results	
  back	
  to	
  the	
  community	
  
	
  
       • Can	
  we	
  bring	
  in	
  different	
  colours	
  and	
  visual	
  elements	
  within	
  the	
  data?	
  
       • How	
  might	
  we	
  frame/create	
  context	
  and	
  a	
  learning	
  experience	
  around	
  the	
  data?	
  
       • How	
  do	
  we	
  best	
  package	
  and	
  wrap	
  the	
  idea	
  up	
  visually	
  ie	
  graphic	
  design,	
  user	
  
            interface,	
  user	
  experience	
  as	
  part	
  of	
  a	
  bigger	
  challenge?	
  
	
  
Game-­‐like	
  elements/playability/sociability	
  
Making	
  it	
  too	
  much	
  like	
  a	
  game	
  reduces	
  the	
  quality	
  of	
  classifications	
  –	
  good	
  people	
  leave	
  as	
  
the	
  motivations	
  shift	
  from	
  quality	
  to	
  quantity.	
  
       • Positioned	
  as	
  a	
  game,	
  is	
  it	
  engaging	
  enough?	
  	
  
       • What	
  game-­‐like	
  elements	
  and	
  mechanics	
  might	
  encourage	
  repeat	
  use?	
  
       • How	
  can	
  we	
  bring	
  in	
  social	
  elements	
  into	
  the	
  experience	
  so	
  that	
  people	
  can	
  
            share	
  what	
  they’ve	
  done	
  and	
  encourage	
  others	
  to	
  get	
  involved	
  too	
  e.g.	
  groups	
  of	
  
            family/friends/colleagues?	
  
       • At	
  what	
  point	
  might	
  users	
  have	
  something	
  meaningful	
  to	
  share?	
  
	
  
Profile/rewards/motivation	
  
How	
  do	
  we	
  build	
  in	
  elements	
  that	
  reward	
  and	
  keep	
  people	
  motivated	
  whilst	
  maintaining	
  
quality	
  of	
  interaction?	
  	
  
What	
  kind	
  of	
  measures	
  of	
  activity	
  are	
  meaningful	
  and	
  will	
  keep	
  engagement	
  high?	
  
Frequency	
  of	
  doing	
  it,	
  accuracy	
  of	
  response,	
  depth	
  of	
  activity	
  etc	
  
Can	
  we	
  frame/visualise	
  the	
  data	
  being	
  classified	
  in	
  terms	
  of	
  a	
  big	
  challenge?	
  
How	
  do	
  we	
  visualize	
  the	
  reduction	
  of	
  the	
  backlog	
  of	
  data?	
  
	
  
Learning	
  by	
  doing	
  
People	
  tend	
  to	
  stop	
  because	
  they	
  don’t	
  know	
  if	
  they	
  are	
  doing	
  it	
  properly	
  -­‐>	
  “I’m	
  doing	
  
science,	
  what	
  if	
  I	
  get	
  it	
  wrong,	
  am	
  I	
  the	
  only	
  one	
  going	
  to	
  rate	
  this	
  data?”	
  
Context	
  is	
  critical	
  –	
  what	
  am	
  I	
  looking	
  at	
  and	
  what	
  does	
  it	
  mean	
  
What	
  could	
  the	
  initial	
  sign-­‐up,	
  information	
  and	
  learning	
  tutorial	
  look	
  like?	
  
What	
  kind	
  of	
  things	
  do	
  we	
  need	
  to	
  do	
  to	
  reassure	
  people	
  at	
  different	
  stages	
  and	
  give	
  
them	
  feedback?	
  
What	
  kind	
  of	
  interactivity/place	
  to	
  talk	
  about	
  their	
  observers	
  can	
  we	
  build	
  to	
  connect	
  
users	
  with	
  others	
  looking	
  at	
  same	
  picture?	
  
	
  

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Collaborating to Beat Cancer: Come Help Cancer Research UK

  • 1.       Collaborating to Beat Cancer Open Labs - Come and help Cancer Research UK to beat cancer Imagine a world where 100,000s of people playing a simple game-based app on their smartphones or social networks or computers were at the same time analysing data and helping to beat cancer. Think Citizens Science meets Angry Birds. Together with Cancer Research UK and the Citizens Science Alliance, we’re delighted to be embarking on an ambitious collaborative Good for Nothing experiment – Open Labs – taking place at The Science Museum over the weekend of 18, 19, 20 May. ------------------------------------------------------------------------------------------------------- Our challenge is to develop a simple, but addictive app with game elements that would enable hundreds of thousands of supporters in the UK to help beat cancer... ------------------------------------------------------------------------------------------------------- We want to create something that when playing, will analyse real data, from real cancer patients, leading to real results and real breakthroughs in the development of personalised medicine. By analysing data faster, we can get knowledge to doctors faster, and they in turn can treat people more successfully. Put simply, playing this game really could save lives. So what’s happened so far? To kick things off, Cancer Research UK put out a call to their community of 4000+ research scientists for ideas with the potential to unlock genuine research bottlenecks and tackle meaningful research challenges 2 different ideas have emerged as 2 of the briefs for our challenge. Chris Lintott and his team from Citizen Science Alliance are opening up their APIs to help focus a rapid 48 hour blast of collaborative developing, making and doing. The 3rd challenge is how to communicate the idea of citizen science for cancer research to the great British public. As well as a team of some of the UK and world’s leading cancer research scientists, Chris will be with us for the weekend, to help bring the massive expertise and insight they’ve gained from the groundbreaking Galaxy Zoo, Planet Hunters and rapidly expanding family of Zooniverse projects. Why citizen science and cancer research? Personalised treatment is poised to revolutionise cancer treatment. Every person’s cancer is unique – and their cancer treatment should be too. Tests that reveal the genetic make-up of a patient’s cancer can help doctors to tailor the treatment accordingly.
  • 2.       That means patients will get the RIGHT treatment, first time, with fewer intolerable side effects which could have a major impact on survival rates To develop these tests – and the personalised medicine – we need to decode genetic information. And stunning advances in technology mean we can do this faster than ever. But it still requires analysis of huge amounts of genetic data by real people that cannot be left to computers alone. Analysis that researchers at top universities are doing every day; looking for patterns, exceptions and abnormalities. This job needs human intuition and the human eye. And that’s why it takes so much time. But with the collective power of hundreds of thousands of people, and their eyes, we could speed up this research by years, and save lives. ------------------------------------------------------------------------------------------------------- Brief #1: Accelerating pathologists analysis of tumours ------------------------------------------------------------------------------------------------------- The outline idea Each year, thousands of patients take part in clinical trials, providing precious tumour samples - each one offering vital clues as to why a patient’s treatment did or didn’t work. A game that ‘scores’ tumour samples on a grid like the one shown would accelerate this analysis to benefit patients faster. Each dot above is a tiny tumour sample stained for a specific marker. People would be asked to score the samples depending on what markers they can see. A typical trial could generate up to 18,000 of these dots to analyse for up to 20 different markers - a task that will take years without additional help. By playing the game, you’ll build up a bank of knowledge to help doctors personalise treatment and transform the outlook for women with breast cancer
  • 3.       The key issues There is a genuine backlog of research that upon proper analysis could yield all sorts of insights and breakthroughs. This would accelerate research and free up scientists to tackle other less routine issues There are a number of different ways in which people could analyse tumours ranging from assessing the colour intensity, to sizing the proportion of tumour stained to looking for irregularities. In each case, a basic introductory level of training is needed which would become part of the game/application. The challenge The overall challenge is to build a set of prototypes for the app and training module - using technology, gaming, design, social web and communications expertise to see what awesome ideas emerge…. What we’re looking for… • A game or application with a user interface that has the potential to get hundreds of thousands of people engaged and actively helping to get through the research backlog • Has broad appeal across a wide range of people – from school kids to grandparents, not just hardcore gamers • Works across platforms (online, mobile) • Has a mechanism in it that encourages and rewards involvement/sharing • Has a competitive element that makes the whole experience immersive • Packaged in a way that makes it easy, fun and engaging • Supported by insights into users, scientists and cancer patients Potential data-sets We have samples from 3000 women on a landmark breast cancer trial. The trial is testing the best way to treat women in their 20s and 30s with the disease. This will be demonstrated as part of the briefings. Each data set consists of high resolution images that sit on a server to be pulled forward for analysis. The data exists within an online SQL database as well as a sample set of data that we’ve put into Dropbox for people to use alongside the CSI platform API. Lead scientists Andy Hanby, Diana Wheeler and Paul Pharoah ----------------------------------------------------------------------------------------- Brief #2: Accelerating genetic analysis of tumours ----------------------------------------------------------------------------------------- The outline idea Every person’s cancer is made up of a unique combination of genetic faults - a genetic ‘signature’. New technology means we can analyse these genetic signatures from thousands of patients faster than ever - churning out petabytes of data.
  • 4.       Results like those below, which show changes in the levels of some genes, would benefit from human analysis in addition to current automated processes. The data above shows changes in the amount of genetic material. Gamers would be looking for regions such as the one in the middle where the level changes sharply. Changes in level across many tumour samples would help to locate important cancer-causing gene faults. Not all the changes in our genes cause cancer. But by taking part & spotting the subtleties a computer can’t, you could be the one to find a breakthrough cancer-causing mutation. It’s a game of chance but the stakes are high. The key issues The current mechanism for analysing data is through sophisticated algorithms that predict the genetic sequence in and around the mutations. The way the algorithms work means that some important parts of the genetic sequence in and around the mutations are less accurately predicted. There is a real need to do more exploratory work on this, as the rate at which data is being produced, means that adding a human element to the algorithmic analysis could yield new and important findings. The challenge The overall challenge is to build a set of prototypes for the app and training module - using technology, gaming, design, social web and communications expertise to see what awesome ideas emerge…. What we’re looking for… • A game or application with a user interface that has the potential to get hundreds of thousands of people engaged and actively helping to get through the research backlog • Has broad appeal across a wide range of people – from school kids to grandparents, not just hardcore gamers • Works across platforms (online, mobile) • Has a mechanism in it that encourages and rewards involvement/sharing • Has a competitive element that makes the whole experience immersive
  • 5.       • Packaged in a way that makes it easy, fun and engaging • Supported by insights into users, scientists and cancer patients Potential data-sets Data exists within the public domain that can be used to build a working prototype. We will have a set of data available on Dropbox and it will be demonstrated as part of the briefings. There are no working standards yet for this type of data – most data sets existing in BED format or compatible format for viewing in the Integrative Genomics Viewer – an open source piece of software. Lead scientist Andy Lynch ------------------------------------------------------------------------------------------------------- Brief #3: How do we engage the wider public in the idea of citizen science for cancer research? ------------------------------------------------------------------------------------------------------- The idea of citizen science is unique and a relatively new concept for most people so how do we best communicate it to get the highest possible appeal and uptake? This is a free-range challenge that we’d love to have people work on to tackle the issue of communications approach and strategy for this initiative – overall and for the individual ideas as they start to emerge and develop over the weekend. The primary audience is the great British public, but given the aim to make this go as big as possible, how can we best talk to potential technology partners and even other brands to get them involved in making this happen? Pro-bono public research into citizen science and cancer research just in gives us some insights to start from and will be available as input for everyone to use. We also know that the citizen science community that Chris has built is science attentive but not specialists e.g. amateur astronomers – they’re curious, educated, motivated by taking part in research, doing something and making a contribution. So this brief is really all about immersing ourselves in creating a communications strategy, approach and supporting assets that will help to accelerate this idea into execution. Key questions Who’s the audience(s) for cancer research citizen science? For each key audience, what’s the proposition that will hook them to get involved? What key messages will engage them - both overall and with the specific application/platform being developed? How might we best package the idea up visually as a concept/identity? How do we best communicate/ launch it e.g. in terms of a challenge?
  • 6.       Potential outputs A communications strategy and campaign for citizen science for Cancer Research UK Supporting assets e.g. vox-pops from potential audience, mash-up films, mood- film/animation/storyboard, branding ideas and identities, pitch presentations ….etc ------------------------------------------------------------------------------------------------------- Some stuff to think about for all the challenges…. ------------------------------------------------------------------------------------------------------- Visual  engagement   Pictures  of  galaxies  are  interesting.  Tumour  images/genetic  profiles  maybe  less  so.     How  can  we  present  data  in  an  engaging  way  to  the  user?  How  do  we  best  present   results  back  to  the  users?  How  do  we  best  present  results  back  to  the  community     • Can  we  bring  in  different  colours  and  visual  elements  within  the  data?   • How  might  we  frame/create  context  and  a  learning  experience  around  the  data?   • How  do  we  best  package  and  wrap  the  idea  up  visually  ie  graphic  design,  user   interface,  user  experience  as  part  of  a  bigger  challenge?     Game-­‐like  elements/playability/sociability   Making  it  too  much  like  a  game  reduces  the  quality  of  classifications  –  good  people  leave  as   the  motivations  shift  from  quality  to  quantity.   • Positioned  as  a  game,  is  it  engaging  enough?     • What  game-­‐like  elements  and  mechanics  might  encourage  repeat  use?   • How  can  we  bring  in  social  elements  into  the  experience  so  that  people  can   share  what  they’ve  done  and  encourage  others  to  get  involved  too  e.g.  groups  of   family/friends/colleagues?   • At  what  point  might  users  have  something  meaningful  to  share?     Profile/rewards/motivation   How  do  we  build  in  elements  that  reward  and  keep  people  motivated  whilst  maintaining   quality  of  interaction?     What  kind  of  measures  of  activity  are  meaningful  and  will  keep  engagement  high?   Frequency  of  doing  it,  accuracy  of  response,  depth  of  activity  etc   Can  we  frame/visualise  the  data  being  classified  in  terms  of  a  big  challenge?   How  do  we  visualize  the  reduction  of  the  backlog  of  data?     Learning  by  doing   People  tend  to  stop  because  they  don’t  know  if  they  are  doing  it  properly  -­‐>  “I’m  doing   science,  what  if  I  get  it  wrong,  am  I  the  only  one  going  to  rate  this  data?”   Context  is  critical  –  what  am  I  looking  at  and  what  does  it  mean   What  could  the  initial  sign-­‐up,  information  and  learning  tutorial  look  like?   What  kind  of  things  do  we  need  to  do  to  reassure  people  at  different  stages  and  give   them  feedback?   What  kind  of  interactivity/place  to  talk  about  their  observers  can  we  build  to  connect   users  with  others  looking  at  same  picture?