biopython, doctest and makefiles

Barcelona Python Developers Seminars biopython, doctest and makefiles

This is me ,[object Object],[object Object],[object Object],[object Object]

Intro ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

BioPython – some use cases ,[object Object],[object Object],[object Object],[object Object],[object Object]

BioPython – use cases ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

BioPython documentation ,[object Object],[object Object],[object Object],[object Object],[object Object]

[object Object],doctest ,[object Object],Example of say_hello's usage function's docstring (everything in green)

The docstring ,[object Object],>>> help (say_hello) Help on function say_hello in module __main__: say_hello(name) print hello <name> to the screen example: >>> say_hello('Albert Einstein') hello Albert Einstein!!!

doctest – how does it works ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

doctest - examples ,[object Object]

doctest – file parsing example ,[object Object],[object Object],[object Object]

Choose good examples ,[object Object],[object Object],[object Object]

Doctest – Pros and Cons ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Bioinformatics – a different approach ,[object Object],[object Object],[object Object],[object Object]

What is a makefile? ,[object Object],[object Object],[object Object]

Simplest Makefile example ,[object Object]

Makefiles – Pros ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Make - Cons ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

A more complicated Makefile ,[object Object],[object Object],[object Object],[object Object]

Thanks for the attention! Did you like the talk?

BioPython – use cases ,[object Object],[object Object],[object Object]

Doctest – a closer look ,[object Object],[object Object],[object Object],[object Object],normal doc example of function usage expected output body of the function call to the doctest module new function definition

biopython, doctest and makefiles

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biopython, doctest and makefiles