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Hawaii Geospatial Data Repository


                Donna M. Delparte, PhD
University of Hawaii at Hilo, Geography and Env. Studies




HIGICC Hawaii Pacific GIS Conference 2012 "Geospatial - It's Everywhere"
                                                                           1
Where does your digital data go?




0            10       15               20+




                                             2
Consequences?
•   Data is lost or too costly to retrieve
•   Data re-discovery
•   Data re-collection
•   Data time series incomplete
•   Data duplication
•   Data lacks metadata preventing creation of derived
    products




                                                         3
So what?

How do you implement advanced cyberinfrastructure
     that enables GIScience for researchers?




         How do you get them to use it?




                                                    4
Hawaii Geospatial Data Repository Goal:

            Centralized integrative capability to store and manage
                    access to (terabytes) research datasets


                      University of Hawaii     Broad statewide
     Users:             research teams       research community



Objectives:

 Collect, store and manage
       access to data                          Discovery, manipulation, fusion and
                                                           visualization

    Utilize user portals



  Utilize and link to High Performance
                Computing

                                                                                     5
Geospatial Information and Mass Storage




                            High Performance
                               Computing       6
Survey
          Main Types of User Data
• Flat files with x, y coordinates
   – Spreadsheets, csv, xls
   – Sensor data , csv

• GIS Data Layers
   – Geodatabases, shapefiles

• Other
   – LiDAR
   – Imagery

                                     7
User Sophistication
• General User Requests: (Consumer)
  – Data Storage, Discovery and Mining:
     •   Store, query, upload and download and sharing
     •   Visualize data overlays on maps and graphing /charting options
     •   Metadata
     •   QA/QC
• Advanced User Requests: (Producer)
  – All of the above plus
     • Webservices, HPC, WPS
     • Customized applications


                                                                      8
Dialog/Discussion/One-to-One Interaction
          Must-haves for Users:
 • Full control of their data
    – Easy to use interface for uploading/downloading data
        • Web-accessible interface
        • Select persons can upload data
        • Anyone can download data (caveat: select persons for sensitive
          information)

 • Access to other collaborators data (who is collecting what
   data and where?)
    – Displaying their data as overlapped with other datasets in the
      same location
                                      Stratified User Accounts:
 • Automated QA/QC                    -Data Manager
                                      -Data Uploader
 • Extension and Outreach             -Public Viewer
                                                                           9
Scientific Data Management –
spreadsheet upload/download


ESRI Web Mapping Services and
customized apps


Outreach through virtual tours




                                 10
Scientific Data
Management




                  11
12
User Requirements
Select persons can upload data                 Anyone can download data (caveat: select
     Easy to use by non-technical people        persons for sensitive information)
     CSV format can be uploaded                Data retrieval can be restricted if
     Data is stored in a secure location        necessary
     Data is controlled for quality (QC)       Data can be downloaded in any format
     Erroneous data is flagged to be            requested
     corrected                                  Downloaded data will include metadata
     Data can be corrected at time of input
                                                Downloaded data will be of best available
     Metadata can be created-on-the-fly
                                                 quality (QA)
                                                Data is selectable such that a subset may
                                                 be downloaded
                                                Data will be downloadable from multiple
                                                 EPSCoR projects at the same time
                                                Data will be downloadable from multiple
                                                 projects at the same time – EPSCoR and
                                                 outside research stations (NOAA buoy)
                                                                                      13
ENGAGING RESEARCHER PARTICIPATION THROUGH CUSTOMIZED
APPLICATIONS FOR OUTREACH - Web Mapping Services




                                                       14
ENGAGING RESEARCHER PARTICIPATION THROUGH CUSTOMIZED
APPLICATIONS FOR OUTREACH - Integration of Virtual Tours




                                                           15
Engaging User Participation
through Cross-Cutting Projects




                            16
Summary - Engaging Researcher
    Participation – What’s Working?
• Integrating their requests into the system
• Working directly with researchers to enable
  their role as data managers / custodians
  through the web interface
• Opportunities of collaboration
• Attractive outreach and extension tools
• NSF data management plans

                                                17
Small Scale Repository Challenges
• Small staff to customize applications for many
  users – training and enabling component
• Which software utilities?
• Metadata entry and crawling
• Implementing data standards and models
• Are we re-inventing the wheel? Many EPSCoR
  institutions are struggling with the same issues –
  – coming up with different solutions.
                                                  18
Small Scale Repository Challenges
• Spreadsheet data collection methods
• Researchers lack of knowledge of data
  management standards and databases in their
  fields (or too many choices)
• Metadata – varied
• Standards – difficult to match datasets
  (regional bias)


                                            19
Next Steps for the Hawaii Geospatial
           Data Repository
• Building user participation and interaction
• Increasing collaborations with other Statewide
  and National Initiatives
• Accessing geoprocessing (HPC) capabilities
• Metadata search tools




                                               20
Acknowledgments:
Hawaii EPSCoR Staff, Grad Students, Researchers and
                  Collaborators:
•   Kohei Miyagi          •   John Burns
•   Lisa Canale           •   Jo-Ann Leong
•   Michael Best          •   Jim Beets
•   Chris Nishioka        •   Gwen Jacobs
•   Nick Turner           •   David Lassner
•   Marie VanZandt        •   Misaki Takabayashi
•   Joanna Wu             •   Redlands Institute
•   Michael Nullet
•   Tom Giambelluca

                                                      21
off-the-shelf technologies?

• No pre-developed commercial product
• Agency/research exploration included (incomplete list):
    DataONE
    NEON
    Comparative Analysis of Marine Ecosystem Organization (CAMEO)
    DNA barcoding project at UHH
    Geographic Information Network of Alaska (GINA)
    Hierarchical Data Format (HDF 5)
    Intelesense - Inteleview platform
    Long-Term Ecological Research Network Office (LTER-LNO)
    National Centers for Coastal Ocean Science (NOAA NCCOS)
    Pacific Basin Information Node (PBIN) - gone
    Scientific Data Management Center - Lawrence Berkeley National Lab
     (SDMC-LBNL)
    Virtual Observatory and Ecological Informatics System (VOEIS)
                                                                          22

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Hawaii Pacific GIS Conference 2012: GIS in Education: K-12 and University - Hawaii Geospatial Data Repository

  • 1. Hawaii Geospatial Data Repository Donna M. Delparte, PhD University of Hawaii at Hilo, Geography and Env. Studies HIGICC Hawaii Pacific GIS Conference 2012 "Geospatial - It's Everywhere" 1
  • 2. Where does your digital data go? 0 10 15 20+ 2
  • 3. Consequences? • Data is lost or too costly to retrieve • Data re-discovery • Data re-collection • Data time series incomplete • Data duplication • Data lacks metadata preventing creation of derived products 3
  • 4. So what? How do you implement advanced cyberinfrastructure that enables GIScience for researchers? How do you get them to use it? 4
  • 5. Hawaii Geospatial Data Repository Goal: Centralized integrative capability to store and manage access to (terabytes) research datasets University of Hawaii Broad statewide Users: research teams research community Objectives: Collect, store and manage access to data Discovery, manipulation, fusion and visualization Utilize user portals Utilize and link to High Performance Computing 5
  • 6. Geospatial Information and Mass Storage High Performance Computing 6
  • 7. Survey Main Types of User Data • Flat files with x, y coordinates – Spreadsheets, csv, xls – Sensor data , csv • GIS Data Layers – Geodatabases, shapefiles • Other – LiDAR – Imagery 7
  • 8. User Sophistication • General User Requests: (Consumer) – Data Storage, Discovery and Mining: • Store, query, upload and download and sharing • Visualize data overlays on maps and graphing /charting options • Metadata • QA/QC • Advanced User Requests: (Producer) – All of the above plus • Webservices, HPC, WPS • Customized applications 8
  • 9. Dialog/Discussion/One-to-One Interaction Must-haves for Users: • Full control of their data – Easy to use interface for uploading/downloading data • Web-accessible interface • Select persons can upload data • Anyone can download data (caveat: select persons for sensitive information) • Access to other collaborators data (who is collecting what data and where?) – Displaying their data as overlapped with other datasets in the same location Stratified User Accounts: • Automated QA/QC -Data Manager -Data Uploader • Extension and Outreach -Public Viewer 9
  • 10. Scientific Data Management – spreadsheet upload/download ESRI Web Mapping Services and customized apps Outreach through virtual tours 10
  • 12. 12
  • 13. User Requirements Select persons can upload data Anyone can download data (caveat: select Easy to use by non-technical people persons for sensitive information) CSV format can be uploaded  Data retrieval can be restricted if Data is stored in a secure location necessary Data is controlled for quality (QC)  Data can be downloaded in any format Erroneous data is flagged to be requested corrected  Downloaded data will include metadata Data can be corrected at time of input  Downloaded data will be of best available Metadata can be created-on-the-fly quality (QA)  Data is selectable such that a subset may be downloaded  Data will be downloadable from multiple EPSCoR projects at the same time  Data will be downloadable from multiple projects at the same time – EPSCoR and outside research stations (NOAA buoy) 13
  • 14. ENGAGING RESEARCHER PARTICIPATION THROUGH CUSTOMIZED APPLICATIONS FOR OUTREACH - Web Mapping Services 14
  • 15. ENGAGING RESEARCHER PARTICIPATION THROUGH CUSTOMIZED APPLICATIONS FOR OUTREACH - Integration of Virtual Tours 15
  • 16. Engaging User Participation through Cross-Cutting Projects 16
  • 17. Summary - Engaging Researcher Participation – What’s Working? • Integrating their requests into the system • Working directly with researchers to enable their role as data managers / custodians through the web interface • Opportunities of collaboration • Attractive outreach and extension tools • NSF data management plans 17
  • 18. Small Scale Repository Challenges • Small staff to customize applications for many users – training and enabling component • Which software utilities? • Metadata entry and crawling • Implementing data standards and models • Are we re-inventing the wheel? Many EPSCoR institutions are struggling with the same issues – – coming up with different solutions. 18
  • 19. Small Scale Repository Challenges • Spreadsheet data collection methods • Researchers lack of knowledge of data management standards and databases in their fields (or too many choices) • Metadata – varied • Standards – difficult to match datasets (regional bias) 19
  • 20. Next Steps for the Hawaii Geospatial Data Repository • Building user participation and interaction • Increasing collaborations with other Statewide and National Initiatives • Accessing geoprocessing (HPC) capabilities • Metadata search tools 20
  • 21. Acknowledgments: Hawaii EPSCoR Staff, Grad Students, Researchers and Collaborators: • Kohei Miyagi • John Burns • Lisa Canale • Jo-Ann Leong • Michael Best • Jim Beets • Chris Nishioka • Gwen Jacobs • Nick Turner • David Lassner • Marie VanZandt • Misaki Takabayashi • Joanna Wu • Redlands Institute • Michael Nullet • Tom Giambelluca 21
  • 22. off-the-shelf technologies? • No pre-developed commercial product • Agency/research exploration included (incomplete list):  DataONE  NEON  Comparative Analysis of Marine Ecosystem Organization (CAMEO)  DNA barcoding project at UHH  Geographic Information Network of Alaska (GINA)  Hierarchical Data Format (HDF 5)  Intelesense - Inteleview platform  Long-Term Ecological Research Network Office (LTER-LNO)  National Centers for Coastal Ocean Science (NOAA NCCOS)  Pacific Basin Information Node (PBIN) - gone  Scientific Data Management Center - Lawrence Berkeley National Lab (SDMC-LBNL)  Virtual Observatory and Ecological Informatics System (VOEIS) 22