BITS: Introduction to Linux - Software installation the graphical and the command-line way

Dive into Linux ,[object Object],[object Object],BITS/VIB Bioinformatics Training – Oct 3, 2011 – Version 2 Joachim Jacob < [email_address] >; version 1 Luc Ducazu <luc@daphnia.com>

Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object]

Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Software ,[object Object],[object Object],[object Object],[object Object],[object Object]

Software installation the graphical way ,[object Object]

Dependencies ,[object Object],[object Object],[object Object]

Multi-user aspects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Test run press <win+space> and start typing “Fir”

Where to find software? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Important: 32 bit vs. 64 bit

Where does the software manager finds its packages? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Exercise ,[object Object],[object Object],Choose 32 bit

Solution ,[object Object],preferred

Fastx is a command-line tool So we will dive into the shell!

Shell ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

You never walk alone ,[object Object],[object Object],[object Object]

Man ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Exercise ,[object Object],[object Object],[object Object],[object Object]

Some solution ,[object Object],[object Object],[object Object],[object Object],apropos calendar cal (1) - displays a calendar and the date of Easter calendar (1) - reminder service Date::Calc (3pm) - Gregorian calendar date calculations Date::Calendar (3pm) - Calendar objects for different holiday schemes Date::Calendar::Profiles (3pm) - Some sample profiles for Date::Calendar and Date::Calendar::Year Date::Calendar::Year (3pm) - Implements embedded "year" objects for Date::Calendar Ncal (1) - displays a calendar and the date of Easter

Getting formal about commands ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Commands ,[object Object],[object Object],[object Object],[object Object]

Commands ,[object Object],[object Object],[object Object],[object Object],[object Object]

Short options ,[object Object],[object Object],[object Object]

Long options ,[object Object],[object Object]

Arguments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Arguments ,[object Object],[object Object]

More about ls ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Long List ,[object Object],[object Object],[object Object],[object Object]

Permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

File permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Executable files ,[object Object],[object Object],[object Object]

Executable files ,[object Object]

Directory permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Wildcards ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Hidden files ,[object Object],[object Object]

Exercises ,[object Object],[object Object],[object Object],[object Object]

Solutions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Command history ,[object Object],[object Object],[object Object]

Command history ,[object Object],[object Object]

Tab expansion ,[object Object],[object Object],[object Object],[object Object],[object Object]

Switch User ,[object Object],[object Object],[object Object],[object Object]

Switch User ,[object Object],[object Object]

Switch User ,[object Object],[object Object],[object Object]

Yum ,[object Object],[object Object],[object Object],[object Object],[object Object]

Yum repositories ,[object Object],[object Object]

Yum repositories ,[object Object],[object Object],[object Object],[object Object]

Yum - examples ,[object Object],[object Object],[object Object],[object Object],[object Object]

Yum - examples ,[object Object],[object Object],[object Object],[object Object]

Yum - examples ,[object Object],[object Object],[object Object]

Solutions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Solutions ,[object Object],[object Object],[object Object],[object Object]

Solution ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

BITS: Introduction to Linux - Software installation the graphical and the command-line way

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BITS: Introduction to Linux - Software installation the graphical and the command-line way