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General Microbiology

                   3-unit subject for Dental students
                             2-unit Lecture
                           1-unit Laboratory
                                                Ver .2011-1
HTL Microbiology
HTL Microbiology
HTL Microbiology
HTL Microbiology
HTL Microbiology
HTL Microbiology
HTL Microbiology
Introduction
            q Microbiology - micros/bios/logos
            q History
            q Branches
            q Application
            q Microscopy
            q Units of measurements – um, nm, Ǻ




HTL Microbiology
History-self check
                   (How many do you know?)
            q Fracastorius     q Lister, J.
            q Leeuwenhoek A.   q Jenner, E.
            q Needham , J      q Koch, R.
            q Spallanzani,L.   q Iwanowski, D.
            q Tyndall, J.      q Ehrlich, P.
            q Flemming, A.     q Pasteur, L.




HTL Microbiology
History
            q      Fracastorius       q   Leeuwenhoek, A.V.




HTL Microbiology                                              1
q      Needham   q   Spallanzani




HTL Microbiology                               1
Tyndall, J.   Lister, J




HTL Microbiology                      1
q      Flemming, A.   q   Jenner, E.




HTL Microbiology                                   1
q      Ehrlich, P.   q   Iwanowski, D.




HTL Microbiology                                     1
Development of microscopy:
            q      Aristotle (384-322) and others believed that
                   living organisms could develop from non-
                   living materials.
            q      1590: Hans and Zacharias Janssen (Dutch lens
                   grinders) mounted two lenses in a tube to
                   produce the first compound microscope.
            q      1660: Robert Hooke (1635-1703) published
                   "Micrographia", containing drawings and
                   detailed observations of biological materials
                   made with the best compound microscope
                   and illumination system of the time.
HTL Microbiology                                                   1
q 1676: Anton van Leeuwenhoek
              (1632-1723) was the first person to
              observe microorganisms.
            q 1883: Carl Zeiss and Ernst Abbe
              pioneered developments in microscopy
              (such as immersion lenses and
              apochromatic lenses which reduce
              chromatic aberration) which perist until
              the present day.
            q 1931: Ernst Ruska constructed the first
              electron microscope

HTL Microbiology                                         1
Spontaneous generation controversy


          q   John Needham – English scientist who theorized
              that life comes from non life demonstrated by
              maggots developing on a piece of rotting meat

          q   1688: Francesco Redi (1626-1678) was an Italian
              physician who refuted the idea of spontaneous
              generation by showing that rotting meat
              carefully kept from flies will not spontaneously
              produce maggots.

HTL Microbiology                                                 1
q 1836: Theodor Schwann (1810-1882)
              helped develop the cell theory of
              living organisms, namely that that all
              living organisms are composed of
              one or more cells and that the cell is
              the basic functional unit of living
              organisms.
            q 1861: Louis Pasteur's (1822-1895)
              famous experiments with swan-
              necked flasks finally proved that
              microorganisms do not arise by
              spontaneous generation.

HTL Microbiology                                       1
q      This eventually led to:
                   Development of sterilization
                   Development of aseptic technique




HTL Microbiology                                      1
Proof that microbes cause disease
    q   1546: Hieronymus Fracastorius (Girolamo
        Fracastoro) wrote "On Contagion" ("De
        contagione et contagiosis morbis et curatione"),
        the the first known discussion of the phenomenon
        of contagious infection.

    q   1835 Agostino Bassi de Lodi showed that a
        disease affecting silkworms was caused by a
        fungus - the first microorganism to be recognized
        as a contagious agent of animal disease
HTL Microbiology                                            2
q 1847: Ignaz Semmelweiss (1818-1865), a
              Hungarian physician who decided that
              doctors in Vienna hospitals were
              spreading childbed fever while
              delivering babies. He started forcing
              doctors under his supervision to wash
              their hands before touching patients.
            q 1857: Louis Pasteur proposed the "germ
              theory" of disease.


HTL Microbiology                                       2
q 1867: Joseph Lister (1827-1912) introduced
       antiseptics in surgery. By spraying carbolic acid
       on surgical instruments, wounds and dressings,
       he reduced surgical mortality due to bacterial
       infection considerably
     q 1876: Robert Koch (1843-1910). German
       bacteriologist was the first to cultivate anthrax
       bacteria outside the body using blood serum at
       body temperature. Building on pasteur's "germ
       theory", he subsequently published "Koch's
       postulates" (1884), the critical test for the
       involvement of a microorganism in a disease:

HTL Microbiology                                           2
– The agent must be present in every case of the
           disease.
         – The agent must be isolated and cultured in vitro.
         – The disease must be reproduced when a pure culture
           of the agent is inoculated into a susceptible host.
         – The agent must be recoverable from the
           experimentally-infected host

    q   This eventually led to:
         – Development of pure culture techniques
         – Stains
         – Agar & culture media
         – petri dishes


HTL Microbiology                                                 2
q   Pasteur, Louis




HTL Microbiology        2
qKoch, R.




HTL Microbiology       2
Golden Age of Microbiology:
                    ( 1857-1914)
            q 1857 – Pasteur – Fermentation
            q 1861 – Pasteur – disproved spontaneous
              generation
            q 1864 – Pasteur – Pasteurization
            q 1867 – Lister – Aseptic Surgery
            q 1876 – Koch – Germ Theory of Disease
            q 1879 – Neisser – N. gonnorhea
            q 1881- Koch – pure culture
HTL Microbiology                                       2
q 1881 – Finley – Yellow Fever
            q 1882 – Koch – Postulates
            q 1882 – Hess – Solid Agar media
            q 1883 – Koch – Vibrio cholera
            q 1884 – Metchnikoff – phagocytosis
            q 1884 – Gram – Gram staining procedure
            q 1884 – Escherich – Escherichia coli
            q 1887 – Petri – Petridish
            q 1889 – Kitasato – Clostridium tetani


HTL Microbiology                                      2
q 1890 – Von Berring – Diphtheria antitoxin
       q 1890 - Ehrlich – Theory of Immunity
       q 1892 – Winogradsky – sulfur Cycle
       q 1898 – Shiga – Shigella dysenteriae
       q 1910 – Chaga – Trypanosoma cruzi
       q 1910 – Ehrlich – Syphilis

       Golden age of Microbiology is so named because
         numerous discoveries during this period led to
         the establishment of microbiology as a science.

HTL Microbiology                                           2
Divisions & Applications
   q   Bacteriology            q   Medical
   q   Protozoology            q   Food & Dairy
   q   Mycology                q   Soil & Water
   q   Virology                q   Industrial
   q   Protistology            q   Space
   q   Immunology              q   Marine & Aquatic
   q   Molecular Biology       q   Environmental
   q   Genetic Engineering     q   Agricultural
   q   Biotechnology           q   Education
HTL Microbiology                                      2
Bacteriology:




HTL Microbiology        3
Protistology:




HTL Microbiology        3
Mycology:




HTL Microbiology    3
Immunology:




HTL Microbiology      3
Molecular Biology:




HTL Microbiology             3
Virology:




HTL Microbiology    3
Parasitology:




HTL Microbiology        3
Genetics:




HTL Microbiology    3
Industrial uses of
                     Microorganisms
            q Cheese
            q Alcoholic beverages
            q Vinegar
            q Citric Acid
            q Vitamins
            q Antibiotics
            q Amino acids & Insulin


HTL Microbiology                         3
Types of Microorganisms:
            q Bacteria/bacterium
            q Fungi/Fungus
            q Protozoa/Protozoan
            q Algae/alga
            q Viruses
            q Multicellular Animal
              Parasites/Helminths

HTL Microbiology                              3
Career opportunities
            q      Research associate    q   Supervisor/lab
            q      Food , industrial &       manager
                   environmental         q   Instructor/
                   tech.                     Professor
            q      Clinical & medical    q   Scientist
            q      Medical               q   Research Director
                   technologist          q   Consultant
            q      Veterinary            q   Infectious disease
                   microbiologist            specialist
HTL Microbiology                                                  4
Trivia: What is the origin of
                       the caduceus?


              ???              ???
                   ??                ???
                             Ano daw?!?
HTL Microbiology                               4
The caduceus, symbol of the medical
              profession, was designed from the procedure
              for removing parasitic guinea worm
              (Dracunculus medinensis)
HTL Microbiology                                            4
What’s new?
     q   WNE – West Nile Encephalitis – 1999
          – 3559 cases in 35 states of USA
     q   BSE – Bovine spongiform encephalopathy
          – Mad cow disease – 1996
     q   CJD – Creutzfeldt Jakob Disease - 2002
          – Caused by prion in bovine– UK 138 cases human
     q   E. coli O157:H7 – 1996
          – 2000 cases Japan

HTL Microbiology                                            4
q   IGAS – Invasive Group A streptococcus
           – 1995 – flesh eating bacteria
      q   EHF – Ebola hemorrhagic Fever – 1995
           – 315 cases – 75% mortality
           – 1996 – monkeys from RP to USA (+)
      q HPS– Hantavirus Pulmonary syndrome – 1993
      q SARS – ( I think you have heard?)
      q H1N1, H5N1 – New Bird Flu strains



HTL Microbiology                                    4
And the latest . . . .
            q Influenza AH1N1 ( 2009)
            q 4 viral strands : 2 bovine, 1 avian, 1
              human
            q Variant strain of the old influenza virus
              that killed 25 million in Europe
            q Originated from Mexico
            q Mortality rate is high if untreated
            q There is a cure and highly treatable

HTL Microbiology                                          4
Microscopy:
                      types & terminologies
            q      Simple              q   Contrast
            q      Compound            q   Reflection
            q      Phase contrast      q   Transmission
            q      Immunofluorescent   q   Absorption
            q      Darkfield           q   Diffraction
            q      Ultraviolet         q   Refraction
            q      X-ray               q   Magnification
            q       TEM/SEM            q   Resolution

HTL Microbiology                                           4
HTL Microbiology   4
What’s the latest?
         q   DIC – Differential Interference Contrast
              – Uses differences in refractive indexes to produce
                image
              – Uses 2 beams of light separated by prisms, the
                specimen appears colored as a result of the prism
                effect. No staining required.
         q   Confocal – uses LASER light to illuminate 1
             plane of the specimen at a time

HTL Microbiology                                                    4
Scanned probe
      q   Scanning tunneling
           – Uses a thin metal probe to scan a specimen and
             produce an image revealing the bumps and
             depressions of the atoms on the surface of the
             specimen. Resolution is greater than the EM and
             no special preparation required.
      q    Atomic force
           – Uses metal & diamond probe gently force down
             the surface of the specimen to produce a 3D image
             without any special preparation.
HTL Microbiology                                                 4
HTL Microbiology   5
HTL Microbiology   5

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Module 1 introduction to microbiology

  • 1. General Microbiology 3-unit subject for Dental students 2-unit Lecture 1-unit Laboratory Ver .2011-1 HTL Microbiology
  • 8. Introduction q Microbiology - micros/bios/logos q History q Branches q Application q Microscopy q Units of measurements – um, nm, Ǻ HTL Microbiology
  • 9. History-self check (How many do you know?) q Fracastorius q Lister, J. q Leeuwenhoek A. q Jenner, E. q Needham , J q Koch, R. q Spallanzani,L. q Iwanowski, D. q Tyndall, J. q Ehrlich, P. q Flemming, A. q Pasteur, L. HTL Microbiology
  • 10. History q Fracastorius q Leeuwenhoek, A.V. HTL Microbiology 1
  • 11. q Needham q Spallanzani HTL Microbiology 1
  • 12. Tyndall, J. Lister, J HTL Microbiology 1
  • 13. q Flemming, A. q Jenner, E. HTL Microbiology 1
  • 14. q Ehrlich, P. q Iwanowski, D. HTL Microbiology 1
  • 15. Development of microscopy: q Aristotle (384-322) and others believed that living organisms could develop from non- living materials. q 1590: Hans and Zacharias Janssen (Dutch lens grinders) mounted two lenses in a tube to produce the first compound microscope. q 1660: Robert Hooke (1635-1703) published "Micrographia", containing drawings and detailed observations of biological materials made with the best compound microscope and illumination system of the time. HTL Microbiology 1
  • 16. q 1676: Anton van Leeuwenhoek (1632-1723) was the first person to observe microorganisms. q 1883: Carl Zeiss and Ernst Abbe pioneered developments in microscopy (such as immersion lenses and apochromatic lenses which reduce chromatic aberration) which perist until the present day. q 1931: Ernst Ruska constructed the first electron microscope HTL Microbiology 1
  • 17. Spontaneous generation controversy q John Needham – English scientist who theorized that life comes from non life demonstrated by maggots developing on a piece of rotting meat q 1688: Francesco Redi (1626-1678) was an Italian physician who refuted the idea of spontaneous generation by showing that rotting meat carefully kept from flies will not spontaneously produce maggots. HTL Microbiology 1
  • 18. q 1836: Theodor Schwann (1810-1882) helped develop the cell theory of living organisms, namely that that all living organisms are composed of one or more cells and that the cell is the basic functional unit of living organisms. q 1861: Louis Pasteur's (1822-1895) famous experiments with swan- necked flasks finally proved that microorganisms do not arise by spontaneous generation. HTL Microbiology 1
  • 19. q This eventually led to: Development of sterilization Development of aseptic technique HTL Microbiology 1
  • 20. Proof that microbes cause disease q 1546: Hieronymus Fracastorius (Girolamo Fracastoro) wrote "On Contagion" ("De contagione et contagiosis morbis et curatione"), the the first known discussion of the phenomenon of contagious infection. q 1835 Agostino Bassi de Lodi showed that a disease affecting silkworms was caused by a fungus - the first microorganism to be recognized as a contagious agent of animal disease HTL Microbiology 2
  • 21. q 1847: Ignaz Semmelweiss (1818-1865), a Hungarian physician who decided that doctors in Vienna hospitals were spreading childbed fever while delivering babies. He started forcing doctors under his supervision to wash their hands before touching patients. q 1857: Louis Pasteur proposed the "germ theory" of disease. HTL Microbiology 2
  • 22. q 1867: Joseph Lister (1827-1912) introduced antiseptics in surgery. By spraying carbolic acid on surgical instruments, wounds and dressings, he reduced surgical mortality due to bacterial infection considerably q 1876: Robert Koch (1843-1910). German bacteriologist was the first to cultivate anthrax bacteria outside the body using blood serum at body temperature. Building on pasteur's "germ theory", he subsequently published "Koch's postulates" (1884), the critical test for the involvement of a microorganism in a disease: HTL Microbiology 2
  • 23. – The agent must be present in every case of the disease. – The agent must be isolated and cultured in vitro. – The disease must be reproduced when a pure culture of the agent is inoculated into a susceptible host. – The agent must be recoverable from the experimentally-infected host q This eventually led to: – Development of pure culture techniques – Stains – Agar & culture media – petri dishes HTL Microbiology 2
  • 24. q Pasteur, Louis HTL Microbiology 2
  • 26. Golden Age of Microbiology: ( 1857-1914) q 1857 – Pasteur – Fermentation q 1861 – Pasteur – disproved spontaneous generation q 1864 – Pasteur – Pasteurization q 1867 – Lister – Aseptic Surgery q 1876 – Koch – Germ Theory of Disease q 1879 – Neisser – N. gonnorhea q 1881- Koch – pure culture HTL Microbiology 2
  • 27. q 1881 – Finley – Yellow Fever q 1882 – Koch – Postulates q 1882 – Hess – Solid Agar media q 1883 – Koch – Vibrio cholera q 1884 – Metchnikoff – phagocytosis q 1884 – Gram – Gram staining procedure q 1884 – Escherich – Escherichia coli q 1887 – Petri – Petridish q 1889 – Kitasato – Clostridium tetani HTL Microbiology 2
  • 28. q 1890 – Von Berring – Diphtheria antitoxin q 1890 - Ehrlich – Theory of Immunity q 1892 – Winogradsky – sulfur Cycle q 1898 – Shiga – Shigella dysenteriae q 1910 – Chaga – Trypanosoma cruzi q 1910 – Ehrlich – Syphilis Golden age of Microbiology is so named because numerous discoveries during this period led to the establishment of microbiology as a science. HTL Microbiology 2
  • 29. Divisions & Applications q Bacteriology q Medical q Protozoology q Food & Dairy q Mycology q Soil & Water q Virology q Industrial q Protistology q Space q Immunology q Marine & Aquatic q Molecular Biology q Environmental q Genetic Engineering q Agricultural q Biotechnology q Education HTL Microbiology 2
  • 38. Industrial uses of Microorganisms q Cheese q Alcoholic beverages q Vinegar q Citric Acid q Vitamins q Antibiotics q Amino acids & Insulin HTL Microbiology 3
  • 39. Types of Microorganisms: q Bacteria/bacterium q Fungi/Fungus q Protozoa/Protozoan q Algae/alga q Viruses q Multicellular Animal Parasites/Helminths HTL Microbiology 3
  • 40. Career opportunities q Research associate q Supervisor/lab q Food , industrial & manager environmental q Instructor/ tech. Professor q Clinical & medical q Scientist q Medical q Research Director technologist q Consultant q Veterinary q Infectious disease microbiologist specialist HTL Microbiology 4
  • 41. Trivia: What is the origin of the caduceus? ??? ??? ?? ??? Ano daw?!? HTL Microbiology 4
  • 42. The caduceus, symbol of the medical profession, was designed from the procedure for removing parasitic guinea worm (Dracunculus medinensis) HTL Microbiology 4
  • 43. What’s new? q WNE – West Nile Encephalitis – 1999 – 3559 cases in 35 states of USA q BSE – Bovine spongiform encephalopathy – Mad cow disease – 1996 q CJD – Creutzfeldt Jakob Disease - 2002 – Caused by prion in bovine– UK 138 cases human q E. coli O157:H7 – 1996 – 2000 cases Japan HTL Microbiology 4
  • 44. q IGAS – Invasive Group A streptococcus – 1995 – flesh eating bacteria q EHF – Ebola hemorrhagic Fever – 1995 – 315 cases – 75% mortality – 1996 – monkeys from RP to USA (+) q HPS– Hantavirus Pulmonary syndrome – 1993 q SARS – ( I think you have heard?) q H1N1, H5N1 – New Bird Flu strains HTL Microbiology 4
  • 45. And the latest . . . . q Influenza AH1N1 ( 2009) q 4 viral strands : 2 bovine, 1 avian, 1 human q Variant strain of the old influenza virus that killed 25 million in Europe q Originated from Mexico q Mortality rate is high if untreated q There is a cure and highly treatable HTL Microbiology 4
  • 46. Microscopy: types & terminologies q Simple q Contrast q Compound q Reflection q Phase contrast q Transmission q Immunofluorescent q Absorption q Darkfield q Diffraction q Ultraviolet q Refraction q X-ray q Magnification q TEM/SEM q Resolution HTL Microbiology 4
  • 48. What’s the latest? q DIC – Differential Interference Contrast – Uses differences in refractive indexes to produce image – Uses 2 beams of light separated by prisms, the specimen appears colored as a result of the prism effect. No staining required. q Confocal – uses LASER light to illuminate 1 plane of the specimen at a time HTL Microbiology 4
  • 49. Scanned probe q Scanning tunneling – Uses a thin metal probe to scan a specimen and produce an image revealing the bumps and depressions of the atoms on the surface of the specimen. Resolution is greater than the EM and no special preparation required. q Atomic force – Uses metal & diamond probe gently force down the surface of the specimen to produce a 3D image without any special preparation. HTL Microbiology 4