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How to Spot a Virus The origins of an immune response Kevin Bonham Sky Brubaker Jillian Astarita
Outline for the Evening Kevin Bonham – The “eyes” of the immune system Sky Brubaker – Different Responses for different disease causing organisms Jillian Astarita – Instructing the immune system to make better vaccines
The Eyes of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
A Cell is the Basic Unit of Life Plasma Membrane Nucleus Cytoplasm
Cells are Organized Into Tissues and Organs Intestine
Cells Need to Change Behavior Based on External Cues Intestine
The “Eyes” of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
There are Many Types of Organisms that Cause Disease Viruses  Bacteria Single-celled parasites Multicellular parasites Pathogens Credit: CDC Credit: NIAID Jasper Lawrence, wikimedia commons
Pathogens Cause Disease in Different Ways Bacteria Intestine Sven Manguard : Wikimedia Commons
Pathogens Cause Disease in Different Ways Worm Intestine Sven Manguard : Wikimedia Commons
The “Eyes” of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
Cells Need to Change Behavior Based on External Cues What Determines Cell Behavior?
Proteins are Molecular Machines http://en.wikipedia.org/wiki/Hemoglobin Fotoosvanrobin – Flickr http://flic.kr/p/4EyhUv
A Cell’s Behavior is Determined by Which Proteins are Made Translation Transcription Nucleus Cytoplasm
Cells Need to Change Behavior Based on External Cues Signal Nucleus Cytoplasm
Receptors Allow Cells to See the Outside World Receptor Nucleus Cytoplasm
Ligand Binding site Receptor Different Receptors See Different Signals
Quick Recap The immune system has to change its behavior depending on what type of pathogen it encounters This behavior is altered by changing which proteins are being produced A cell can get different signals by using different receptors that bind to different ligands Questions?
The “Eyes” of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
Pathogens Can Evolve Faster Than We Can Flickr user AREALFAKE http://flic.kr/p/4LB8tn Flickr User Ngislew http://flic.kr/p/3d335r
There Are Patterns to Pathogens of a Particular Type Pattern Recognition Receptors Flickr user AREALFAKE http://flic.kr/p/4LB8tn Flickr User Ngislew http://flic.kr/p/3d335r
Pattern Recognition Receptors See Shapes Common to Large Groups of Pathogens Bacteria Flagellum
Pattern Recognition Receptors See Shapes Common to Large Groups of Pathogens
Pattern Recognition Receptors Can Tell the Difference Between Different Pathogens  Ligand Innate Immunity Binding site Virus! Worm! Bacteria!
Our Immune System Needs to See Shapes That Can Change Too
Pathogens Can Change Some Proteins Without Eliminating Their Function
A Receptor for One Shape May Not Be Able to See Another
Some Specialized Immune Cells Have Receptors That Can See Many Shapes Binding sites B-cell
B-cell Receptors Are Highly Variable B-cells
B-cell Receptors Can Potentially See Almost Any Shape
Most B-cells Won’t See Any Given Infection… B-cells
…But Some Can
B-cell Receptors Don’t Know What Type of Pathogen They Can See I see it!
Cells With Pattern Recognition Receptors Instruct  B-cells Adaptive Immunity Bacteria! I see it! Bacteria! Got it! Now what? B-cells Innate immune Cell
Summary The immune system recognizes pathogens through specialized receptors Innate immune receptors recognize patterns associated with pathogens and can tell the difference between large groups of pathogens Adaptive immune cells can see almost any shape, but need instruction from the innate immune system
Different Pathogens, Different Responses Up Next: Sky Brubaker
Viruses  Bacteria Different Pathogens, Different Responses Single-celled parasites Multicellular parasites Credit: CDC Credit: NIAID Jasper Lawrence, wikimedia commons
Viruses  Bacteria Pattern Recognition Receptors Differentiate Pathogens Single-celled parasites Multicellular parasites Credit: CDC Credit: NIAID Jasper Lawrence, wikimedia commons
Different Pathogens, Different Responses  Why use different responses?
Directing the Appropriate Response Holger.Ellgaard: Wikimedia Commons FieldMarine: Wikimedia Commons Luis FernándezGarcía : Wikimedia Commons
Directing the Appropriate Response Holger.Ellgaard: Wikimedia Commons FieldMarine: Wikimedia Commons Mattyman17: Wikimedia Commons
Different Pathogens, Different Responses  Why use different responses? ,[object Object],[object Object]
Viral Defense Virus Nucleus Cytoplasm
Viral Defense Cytokines Virus Nucleus Cytoplasm
Viral Defense Antiviral State Cytoplasm
Viral Defense Virus Nucleus
Viral Defense Antiviral State Stops All Protein Production X X
Viral Defense Antiviral State Virus Stops All Protein Production ,[object Object]
Detrimental to cellsX FieldMarine: Wikimedia Commons X X
Viral Defense Antiviral State X X X X X X X X X X X X X Sam: Wikimedia Commons Cytoplasm
Viral Defense Recruit cytotoxic cells X X X X X X X X X X X X X Cytoplasm
Viral Defense Recruit cytotoxic cells ,[object Object]
Uninfected cells are unharmedX X X X X X X X X X X X X Sam: Wikimedia Commons Cytoplasm
Viral Defense Y Production of Neutralizing Antibodies Y Y Y Y Y Y Y Y Y Y Y Y B-cell X X X X X X X X X X X X Cytoplasm
Viral Defense ,[object Object]
Recruit Cytotoxic cells
Neutralizing AntibodiesQuestions?
Bacterial Defense Phagocyte Cytoplasm
Bacterial Defense Phagocytosis
Bacterial Defense Phagocyte Nucleus
Bacterial Defense Cytokines Phagocyte Nucleus
Bacterial Defense Phagocyte Recruitment and Activation Phagocyte Cytoplasm
Bacteria Are Slippery Credit: Phillip G. Allen http://www.biochemweb.org/neutrophil.shtml
Bacterial Defense Y Opsonizing Antibody Production Y Y Y Phagocyte Y Cytoplasm
Bacterial Defense ,[object Object]
Phagocyte Activation
Opsonizing Antibody,[object Object]
Antiviral State
Phagocyte Activation
Recruit Cytotoxic cells
Opsonizing Antibody
Neutralizing Antibodies,[object Object]
 Leprosy: A case of directing an inappropriate response,[object Object]
Numerous skin lesions
High number of bacteria
Low number of bacteria“24 year old man from Norway, suffering from leprosy.” Sam: Wikimedia Commons
Mycobacterium leprae: the causative agent of Leprosy Nucleus CDC Public Health Image Library: 2123
Immune Response Dictates Disease Outcome Lepromatous Tuberculoid ,[object Object]
Strong cytotoxic cell response Y Y Y Y Y cytotoxic cell Nucleus Y “24 year old man from Norway, suffering from leprosy.” Nucleus Sam: Wikimedia Commons Sven Manguard : Wikimedia Commons
Summary  Why use different responses? ,[object Object]
 Leprosy: A case of directing an inappropriate response,[object Object]
How to Spot a Virus The origins of an immune response Kevin Bonham Sky Brubaker Jillian Astarita
Quick recap Many types of pathogens exist Immune cells have different receptors to see these pathogens Innate immune cells instruct adaptive immune cells Different immune responses are required to effectively kill different pathogens
How can we instruct the immune system to make better vaccines? History lesson: how did scientists develop vaccines? Why old vaccines do not always work What we need to learn to make them better New techniques/promising clinical trials
A brief history of vaccination Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection 1796 1000 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection Thehistoryofvaccines.org
Long-term (10-50 years) immunity These vaccines worked…but scientists didn’t know how Inject (not very harmful) pathogen ? ?
A brief history of vaccination Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection Louis Pasteur discovers that repeatedly infecting chickens with cholera weakens the pathogen 1879 1796 1000 1855 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection MA passes first U.S. law mandating vaccination for school children Thehistoryofvaccines.org
Long-term (10-50 years) immunity These vaccines worked…and scientists were starting to figure out how Inject (not very harmful) pathogen Inject weakened pathogen ? ?
A brief history of vaccination Louis Pasteur discovers that repeated passes through chickens weakens cholera Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection 1879 1796 1000 1855 1890 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection MA passes first U.S. law mandating vaccination for school children Serum therapy for diptheria discovered by Kitasato and von Berhing Thehistoryofvaccines.org
Generation of protective anti-toxins (antibodies) ? Long-term (10-50 years) immunity These vaccines worked…and scientists were starting to figure out how ? Inject weakened pathogen ? Inject protein from a pathogen (antigen) No effect!
A brief history of vaccination A. T. Glenny first used alum in diptheria vaccine to increase effectiveness Louis Pasteur discovers that repeated passes through chickens weakens cholera Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection 1920 1879 1796 1000 1950 1855 1890 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection Jonas Salk develops polio vaccine; approved for humans in 1955 MA passes first U.S. law mandating vaccination for school children Serum therapy for diptheria discovered by Kitasato and von Berhing Thehistoryofvaccines.org
Generation of protective anti-toxins (antibodies) Long-term (10-50 years) immunity or Inject protein from a pathogen (antigen) + an adjuvant These vaccines worked…and scientists figured out how! Inject weakened pathogen ? Immune cells see pathogen through innate receptors, instruct adaptive cells
Problems with the old methods Don’t work for every pathogen Largely result in antibodies Sometimes need different responses
Limitations of antibody protection Influenza binding sites HIV binding sites HIV Flu
What do we need to learn to make better vaccines? What type of immune response will be most effective? Which pattern recognition receptors should be targeted? Which cells should antigen and adjuvants be delivered to?
1. What type of immune response will be most effective? Bacteria Receptor Nucleus Cytoplasm Virus
Dendritic cells are specialized phagocytes  Dendritic cells are very good at: ,[object Object]
Deciding what type of immune response should occur
Instructing other immune cellsDendritic cell
2. Which receptors should an adjuvant target? Cytokines released Type of immune response Dendritic cell

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Sitn innate immunity complete

  • 1. How to Spot a Virus The origins of an immune response Kevin Bonham Sky Brubaker Jillian Astarita
  • 2. Outline for the Evening Kevin Bonham – The “eyes” of the immune system Sky Brubaker – Different Responses for different disease causing organisms Jillian Astarita – Instructing the immune system to make better vaccines
  • 3. The Eyes of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
  • 4. A Cell is the Basic Unit of Life Plasma Membrane Nucleus Cytoplasm
  • 5. Cells are Organized Into Tissues and Organs Intestine
  • 6. Cells Need to Change Behavior Based on External Cues Intestine
  • 7. The “Eyes” of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
  • 8. There are Many Types of Organisms that Cause Disease Viruses Bacteria Single-celled parasites Multicellular parasites Pathogens Credit: CDC Credit: NIAID Jasper Lawrence, wikimedia commons
  • 9. Pathogens Cause Disease in Different Ways Bacteria Intestine Sven Manguard : Wikimedia Commons
  • 10. Pathogens Cause Disease in Different Ways Worm Intestine Sven Manguard : Wikimedia Commons
  • 11. The “Eyes” of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
  • 12. Cells Need to Change Behavior Based on External Cues What Determines Cell Behavior?
  • 13. Proteins are Molecular Machines http://en.wikipedia.org/wiki/Hemoglobin Fotoosvanrobin – Flickr http://flic.kr/p/4EyhUv
  • 14. A Cell’s Behavior is Determined by Which Proteins are Made Translation Transcription Nucleus Cytoplasm
  • 15. Cells Need to Change Behavior Based on External Cues Signal Nucleus Cytoplasm
  • 16. Receptors Allow Cells to See the Outside World Receptor Nucleus Cytoplasm
  • 17. Ligand Binding site Receptor Different Receptors See Different Signals
  • 18. Quick Recap The immune system has to change its behavior depending on what type of pathogen it encounters This behavior is altered by changing which proteins are being produced A cell can get different signals by using different receptors that bind to different ligands Questions?
  • 19. The “Eyes” of the Immune System What does the immune system need to see? How does a cell see? The many eyes of the immune system
  • 20. Pathogens Can Evolve Faster Than We Can Flickr user AREALFAKE http://flic.kr/p/4LB8tn Flickr User Ngislew http://flic.kr/p/3d335r
  • 21. There Are Patterns to Pathogens of a Particular Type Pattern Recognition Receptors Flickr user AREALFAKE http://flic.kr/p/4LB8tn Flickr User Ngislew http://flic.kr/p/3d335r
  • 22. Pattern Recognition Receptors See Shapes Common to Large Groups of Pathogens Bacteria Flagellum
  • 23. Pattern Recognition Receptors See Shapes Common to Large Groups of Pathogens
  • 24. Pattern Recognition Receptors Can Tell the Difference Between Different Pathogens Ligand Innate Immunity Binding site Virus! Worm! Bacteria!
  • 25. Our Immune System Needs to See Shapes That Can Change Too
  • 26. Pathogens Can Change Some Proteins Without Eliminating Their Function
  • 27. A Receptor for One Shape May Not Be Able to See Another
  • 28. Some Specialized Immune Cells Have Receptors That Can See Many Shapes Binding sites B-cell
  • 29. B-cell Receptors Are Highly Variable B-cells
  • 30. B-cell Receptors Can Potentially See Almost Any Shape
  • 31. Most B-cells Won’t See Any Given Infection… B-cells
  • 33. B-cell Receptors Don’t Know What Type of Pathogen They Can See I see it!
  • 34. Cells With Pattern Recognition Receptors Instruct B-cells Adaptive Immunity Bacteria! I see it! Bacteria! Got it! Now what? B-cells Innate immune Cell
  • 35. Summary The immune system recognizes pathogens through specialized receptors Innate immune receptors recognize patterns associated with pathogens and can tell the difference between large groups of pathogens Adaptive immune cells can see almost any shape, but need instruction from the innate immune system
  • 36. Different Pathogens, Different Responses Up Next: Sky Brubaker
  • 37. Viruses Bacteria Different Pathogens, Different Responses Single-celled parasites Multicellular parasites Credit: CDC Credit: NIAID Jasper Lawrence, wikimedia commons
  • 38. Viruses Bacteria Pattern Recognition Receptors Differentiate Pathogens Single-celled parasites Multicellular parasites Credit: CDC Credit: NIAID Jasper Lawrence, wikimedia commons
  • 39. Different Pathogens, Different Responses Why use different responses?
  • 40. Directing the Appropriate Response Holger.Ellgaard: Wikimedia Commons FieldMarine: Wikimedia Commons Luis FernándezGarcía : Wikimedia Commons
  • 41. Directing the Appropriate Response Holger.Ellgaard: Wikimedia Commons FieldMarine: Wikimedia Commons Mattyman17: Wikimedia Commons
  • 42.
  • 43. Viral Defense Virus Nucleus Cytoplasm
  • 44. Viral Defense Cytokines Virus Nucleus Cytoplasm
  • 45. Viral Defense Antiviral State Cytoplasm
  • 47. Viral Defense Antiviral State Stops All Protein Production X X
  • 48.
  • 49. Detrimental to cellsX FieldMarine: Wikimedia Commons X X
  • 50. Viral Defense Antiviral State X X X X X X X X X X X X X Sam: Wikimedia Commons Cytoplasm
  • 51. Viral Defense Recruit cytotoxic cells X X X X X X X X X X X X X Cytoplasm
  • 52.
  • 53. Uninfected cells are unharmedX X X X X X X X X X X X X Sam: Wikimedia Commons Cytoplasm
  • 54. Viral Defense Y Production of Neutralizing Antibodies Y Y Y Y Y Y Y Y Y Y Y Y B-cell X X X X X X X X X X X X Cytoplasm
  • 55.
  • 61. Bacterial Defense Cytokines Phagocyte Nucleus
  • 62. Bacterial Defense Phagocyte Recruitment and Activation Phagocyte Cytoplasm
  • 63. Bacteria Are Slippery Credit: Phillip G. Allen http://www.biochemweb.org/neutrophil.shtml
  • 64. Bacterial Defense Y Opsonizing Antibody Production Y Y Y Phagocyte Y Cytoplasm
  • 65.
  • 67.
  • 72.
  • 73.
  • 75. High number of bacteria
  • 76. Low number of bacteria“24 year old man from Norway, suffering from leprosy.” Sam: Wikimedia Commons
  • 77. Mycobacterium leprae: the causative agent of Leprosy Nucleus CDC Public Health Image Library: 2123
  • 78.
  • 79. Strong cytotoxic cell response Y Y Y Y Y cytotoxic cell Nucleus Y “24 year old man from Norway, suffering from leprosy.” Nucleus Sam: Wikimedia Commons Sven Manguard : Wikimedia Commons
  • 80.
  • 81.
  • 82. How to Spot a Virus The origins of an immune response Kevin Bonham Sky Brubaker Jillian Astarita
  • 83. Quick recap Many types of pathogens exist Immune cells have different receptors to see these pathogens Innate immune cells instruct adaptive immune cells Different immune responses are required to effectively kill different pathogens
  • 84. How can we instruct the immune system to make better vaccines? History lesson: how did scientists develop vaccines? Why old vaccines do not always work What we need to learn to make them better New techniques/promising clinical trials
  • 85. A brief history of vaccination Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection 1796 1000 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection Thehistoryofvaccines.org
  • 86. Long-term (10-50 years) immunity These vaccines worked…but scientists didn’t know how Inject (not very harmful) pathogen ? ?
  • 87. A brief history of vaccination Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection Louis Pasteur discovers that repeatedly infecting chickens with cholera weakens the pathogen 1879 1796 1000 1855 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection MA passes first U.S. law mandating vaccination for school children Thehistoryofvaccines.org
  • 88. Long-term (10-50 years) immunity These vaccines worked…and scientists were starting to figure out how Inject (not very harmful) pathogen Inject weakened pathogen ? ?
  • 89. A brief history of vaccination Louis Pasteur discovers that repeated passes through chickens weakens cholera Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection 1879 1796 1000 1855 1890 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection MA passes first U.S. law mandating vaccination for school children Serum therapy for diptheria discovered by Kitasato and von Berhing Thehistoryofvaccines.org
  • 90. Generation of protective anti-toxins (antibodies) ? Long-term (10-50 years) immunity These vaccines worked…and scientists were starting to figure out how ? Inject weakened pathogen ? Inject protein from a pathogen (antigen) No effect!
  • 91. A brief history of vaccination A. T. Glenny first used alum in diptheria vaccine to increase effectiveness Louis Pasteur discovers that repeated passes through chickens weakens cholera Edward Jenner infects 8 yr old boy with cowpox and confers smallpox protection 1920 1879 1796 1000 1950 1855 1890 Son of a Chinese statesman inhaled dried smallpox scabs to confer protection Jonas Salk develops polio vaccine; approved for humans in 1955 MA passes first U.S. law mandating vaccination for school children Serum therapy for diptheria discovered by Kitasato and von Berhing Thehistoryofvaccines.org
  • 92. Generation of protective anti-toxins (antibodies) Long-term (10-50 years) immunity or Inject protein from a pathogen (antigen) + an adjuvant These vaccines worked…and scientists figured out how! Inject weakened pathogen ? Immune cells see pathogen through innate receptors, instruct adaptive cells
  • 93. Problems with the old methods Don’t work for every pathogen Largely result in antibodies Sometimes need different responses
  • 94. Limitations of antibody protection Influenza binding sites HIV binding sites HIV Flu
  • 95. What do we need to learn to make better vaccines? What type of immune response will be most effective? Which pattern recognition receptors should be targeted? Which cells should antigen and adjuvants be delivered to?
  • 96. 1. What type of immune response will be most effective? Bacteria Receptor Nucleus Cytoplasm Virus
  • 97.
  • 98. Deciding what type of immune response should occur
  • 99. Instructing other immune cellsDendritic cell
  • 100. 2. Which receptors should an adjuvant target? Cytokines released Type of immune response Dendritic cell
  • 101. 3. Which dendritic cells should be targeted?
  • 102. Recent advances in vaccines Directly targeting antigens to dendritic cells Collecting dendritic cells and modulating them outside the body
  • 103. There are many types of DCs in different areas of the body Small intestine
  • 104. vaccine ? K ? ? Old vaccine technology provides full body protection
  • 105. Vaccines can be targeted to specific DCs
  • 106. Recent advances in targeted antigen delivery Directly targeting pathogenic antigens to Dendritic Cells Collecting Dendritic Cells and modulating them outside the body
  • 107. Cancer and the immune system Current cancer treatments (chemotherapy) are non-specific and very harmful to healthy cells Immune system can fight cancer cells But, it is hard to see them because they look similar to our own cells in many ways We can use vaccine technology to help the immune system
  • 108. Preventative vaccines vs. Treatment vaccines
  • 109. Inject Dendritic Cells back into patient Cytokines Cancer antigens Grow large numbers of dendritic cells Dendritic cells can be removed from the body and educated to recognize antigens Blood collected from patient http://www.dendritic.info/index.html
  • 110. Dendritic cells therapy has some drawbacks… Costly and time consuming Need more knowledge of cancer antigens Need more knowledge about how to best train dendritic cells
  • 111. …but shows great promise for several diseases Has been largely safe for patients Prostate cancer - first FDA-approved cancer vaccine for men with metastatic prostate cancer Melanoma HIV
  • 112. Summary of part 3 Many successful vaccines confer protection through antibodies For some diseases, different types of protective responses are needed Scientists need to learn more about immune responses to make better vaccines
  • 113. How to spot a virus: take home messages There are many different types of pathogens the immune system needs to see and defend the body against The immune system needs to direct an appropriate response against different pathogens Understanding how to direct these responses will allow us to make better vaccines
  • 114. Thank you! SITN would like to acknowledge the following organizations for their generous support. Harvard Medical School Office of Communications and External Relations Division of Medical Sciences The Harvard Graduate School of Arts and Sciences (GSAS) The Harvard Biomedical Graduate Students Organization (BGSO) The Harvard/MIT COOP Restaurant Associates

Editor's Notes

  1. ----- Meeting Notes (9/20/11 19:31) -----Describe pathogens hereAlso receptor
  2. - All Cars have wheels, may want a different response to different types of cars.
  3. “Hard Wired!”
  4. Individual binding site cannot see many shapes itself, but…