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Creating Knowledge out of Interlinked Data




LOD2 Webinar . 29.11.2011 . Page 1                    http://lod2.eu
Creating Knowledge out of Interlinked Data




        LOD2 is a large-scale integrating project co-funded by the European
        Commission within the FP7 Information and Communication Technologies
        Work Programme. This 4-year project comprises leading Linked Open
        Data technology researchers, companies, and service providers. Coming
        from across 12 countries the partners are coordinated by the Agile
        Knowledge Engineering and Semantic Web Research Group at the
        University of Leipzig, Germany.

        LOD2 will integrate and syndicate Linked Data with existing large-scale
        applications. The project shows the benefits in the scenarios of Media and
        Publishing, Corporate Data intranets and eGovernment.




                                                                                     http://lod2.eu
LOD2 Webinar . 29.11.2011 . Page 2                                                    http://lod2.eu
Creating Knowledge out of Interlinked Data




        Once per month the LOD2 webinar series offer a free webinar about
        tools and services along the Linked Open Data Life Cycle.

        Stay with us and learn more about acquisition, editing, composing,
        connected applications – and finally publishing Linked Open Data.




                                                                             http://lod2.eu
LOD2 Webinar . 29.11.2011 . Page 3                                            http://lod2.eu
Creating Knowledge out of Interlinked Data




                                     LIMES
   - Link Discovery Framework for Metric Spaces -




LOD2 Webinar . 20.03.2012 . Page 4                    http://lod2.eu
Creating Knowledge out of Interlinked Data



Overview


•    LIMES in LOD2
•    Main Ideas
•    Technical Details
•    Using LIMES
      – The „Geeky“ Approach
      – LIMES Interface
      – Assisted Linking




LOD2 Webinar . 20.03.2012 . Page 5                    http://lod2.eu
Creating Knowledge out of Interlinked Data
                                        Inter-
                                      linking/
                                       Fusing

Linked Data Lifecycle
               Manual                                   Classifi-
                      revision/                         cation/
                      authoring                       Enrichment




           Storage/
                                Linked Data                         Quality
           Querying
                                  Lifecycle                         Analysis




                                                      Evolution /
                     Extraction                         Repair

                                       Search/
                                     Browsing/
                                     Exploration
LOD2 Webinar . 20.03.2012 . Page 6                                             http://lod2.eu
Creating Knowledge out of Interlinked Data

          LOD2 Services                             LOD2 Stack UI components
                 Sindice              Sig.ma                                Browse &
LOD2 Stack                                               Semantic
                                                                            Structure

                                                         Authoring
                            GovData.eu
                           eGovernment              LOD2 Stack APIs
                              Portal                and components                         Interlinking API


                                         Exalead     Enterprise Search             DXX         LIMES          SILK
                                          Web
                                         Search                                    Enrichment and Repair API
            Multi-Domain
             Ontology
                                                                                        DL-Learner        ORE

                                                        LOD2 STACK API            Knowledge Base Fusion API
                                                            Create
               Wolters Kluwer Deutschland                  Structure                SemMF              WIQA
            LOD2 applied to Media and Publishing              Link
                                                             Fuse
                                                                                  Knowledge Store API
          LOD Cloud hosted on OpenLink's Virtuoso
               Query and Browsing capability                                             Virtuoso + MonetDB

          LOD Cloud:                                Access interfaces:
                                                             Knowledge Storage Layer


                                                      Linked Data        SPARQL         DUMPS        Triplify, D2R


                 Central LOD2 Services                     Distributed/Local LOD2 Components
LOD2 Webinar . 20.03.2012 . Page 7                                                                                   http://lod2.eu
Creating Knowledge out of Interlinked Data



Link Discovery


• Characteristics
   – Very large data sets
   – Complex data sets
• Problems
   – Runtime
   – Complex Specifications
• Solutions
   – Time-efficient computation
   – Assistance during configuration
   – Machine learning for creating link specifications
LOD2 Webinar . 20.03.2012 . Page 8                       http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES


•    Declarative Link Discovery Framework
•    Tuned towards efficiency and extensibility
•    Set-theoretical grammar for specifying links
•    Time-efficient mappers for single data types
•    Machine learning for detecting link specs




LOD2 Webinar . 20.03.2012 . Page 9                    http://lod2.eu
Creating Knowledge out of Interlinked Data



Architecture

                Machine Learning




LOD2 Webinar . 20.03.2012 . Page 10                   http://lod2.eu
Creating Knowledge out of Interlinked Data



Workflow




LOD2 Webinar . 20.03.2012 . Page 11                   http://lod2.eu
Creating Knowledge out of Interlinked Data



   Workflow


                                                     Hybrid
                                                    approach




                                                               Time-efficient
Rich grammar                                                     mappers

   LOD2 Webinar . 20.03.2012 . Page 12                                          http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Link Specifications


1.   Metadata
2.   Source and Target
3.   Similarity Measure
4.   Acceptance Conditions
5.   Review Conditions
6.   Execution Mode
7.   Output Format




LOD2 Webinar . 20.03.2012 . Page 13                   http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Link Specifications


1.   Metadata
2.   Source and Target
3.   Similarity Measure
4.   Acceptance Conditions
5.   Review Conditions
6.   Execution Mode
7.   Output Format




LOD2 Webinar . 20.03.2012 . Page 14                   http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Link Specifications


1.   Metadata
2.   Source and Target
3.   Similarity Measure
4.   Acceptance Conditions
5.   Review Conditions
6.   Execution Mode
7.   Output Format




LOD2 Webinar . 20.03.2012 . Page 15                   http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Link Specifications


• Preprocessing functions
   – Strings, numerical values
   – Data converters
• Similarity Measures                   Trigram
   – String
   – Numerical values
                              lowerCase


                                               label   label

LOD2 Webinar . 20.03.2012 . Page 16                     http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Link Specifications


• Operators
  – Measure operators
  – Spec operators
                                                            MAX


                                              Trigram                     Trigram


                                      label         label         label         name

LOD2 Webinar . 20.03.2012 . Page 17                                                 http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Link Specifications


• Operators
  – Measure operators
                                                           OR
  – Spec operators

                                          Filter                         Filter


                                         Trigram                        Trigram


                                 label             label        label             name

LOD2 Webinar . 20.03.2012 . Page 18                                                http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Link Specifications


1.   Metadata
2.   Source and Target
3.   Similarity Measure
4.   Acceptance Conditions
5.   Review Conditions
6.   Execution Mode
7.   Output Format




LOD2 Webinar . 20.03.2012 . Page 19                   http://lod2.eu
Creating Knowledge out of Interlinked Data



Geeky approach: XML


• Task: Link drugs
  and ingredients
   – Source: Dailymed
   – Target: Drugbank
   – Features
      • Definition of source, target, measures
      • Using property chains for linking
      • Using preprocessing



LOD2 Webinar . 20.03.2012 . Page 20                   http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Native Interface


• Task: Link drugs
  across knowledge bases
   – Source: DBpedia
   – Target: Drugbank
   – Features
      • Definition of complex measures




LOD2 Webinar . 20.03.2012 . Page 21                   http://lod2.eu
Creating Knowledge out of Interlinked Data



LIMES Native Interface


• OR(trigram(x.rdfs:label, y.drugbank:genericName)|0.8,
  trigram(x.rdfs:label, y.rdfs:label)|0.8)
                                              OR


                     Filter                                 Filter


                   Trigram                                 Trigram


      label                           label        label         genericName
LOD2 Webinar . 20.03.2012 . Page 22                                     http://lod2.eu
Creating Knowledge out of Interlinked Data



COLANUT


• Task: Link diseases
  across knowledge bases
   – Source: Diseasome
   – Target: Sider
   – Features
      • Assisted linking
      • Definition of complex measures




LOD2 Webinar . 20.03.2012 . Page 23                   http://lod2.eu
Creating Knowledge out of Interlinked Data



Further Information


•    Technical Details
      – Requirements: Java 1.6
      – License: http://creativecommons.org/licenses/
        by-nc-sa/3.0/
•    Technical papers
      – Axel-Cyrille Ngonga Ngomo: A Time-Efficient Hybrid Approach to Link
        Discovery. In: Proceedings of the sixth international workshop on
        Ontology Matching, 2011
      – Axel-Cyrille Ngonga Ngomo und Klaus Lyko: EAGLE: Efficient Active
        Learning of Link Specifications using Genetic Programming. In:
        Proceedings of ESWC 2012
      – Axel-Cyrille Ngonga Ngomo, Jens Lehmann, Sören Auer und Konrad
        Höffner: RAVEN -- Active Learning of Link Specifications. In: Proceedings
        of OM@ISWC

LOD2 Webinar . 20.03.2012 . Page 24                                      http://lod2.eu
Creating Knowledge out of Interlinked Data




Credits

Jingle       Axel Ngonga
Coordination Thomas Thurner
             Martin Kaltenböck
Moderation   Martin Kaltenböck
Presented by Axel Ngonga
             http://bis.uni-leipzig.de/AxelNgonga
             ngonga@informatik.uni-leipzig.de




LOD2 Webinar . 29.11.2011 . Page 25                   http://lod2.eu
Creating Knowledge out of Interlinked Data




        Hope you enjoyed staying with us – if you need more detailed
        information, visit us at www.lod2.eu and let us know how we can
        improve to meet your expectations!

        Don’t forget to register for our next webinar

          24.04.2012 – D2R (University of Leipzig)




                                                                          http://lod2.eu
LOD2 Webinar . 29.11.2011 . Page 26                                        http://lod2.eu

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Creating Knowledge from Interlinked Data

  • 1. Creating Knowledge out of Interlinked Data LOD2 Webinar . 29.11.2011 . Page 1 http://lod2.eu
  • 2. Creating Knowledge out of Interlinked Data LOD2 is a large-scale integrating project co-funded by the European Commission within the FP7 Information and Communication Technologies Work Programme. This 4-year project comprises leading Linked Open Data technology researchers, companies, and service providers. Coming from across 12 countries the partners are coordinated by the Agile Knowledge Engineering and Semantic Web Research Group at the University of Leipzig, Germany. LOD2 will integrate and syndicate Linked Data with existing large-scale applications. The project shows the benefits in the scenarios of Media and Publishing, Corporate Data intranets and eGovernment. http://lod2.eu LOD2 Webinar . 29.11.2011 . Page 2 http://lod2.eu
  • 3. Creating Knowledge out of Interlinked Data Once per month the LOD2 webinar series offer a free webinar about tools and services along the Linked Open Data Life Cycle. Stay with us and learn more about acquisition, editing, composing, connected applications – and finally publishing Linked Open Data. http://lod2.eu LOD2 Webinar . 29.11.2011 . Page 3 http://lod2.eu
  • 4. Creating Knowledge out of Interlinked Data LIMES - Link Discovery Framework for Metric Spaces - LOD2 Webinar . 20.03.2012 . Page 4 http://lod2.eu
  • 5. Creating Knowledge out of Interlinked Data Overview • LIMES in LOD2 • Main Ideas • Technical Details • Using LIMES – The „Geeky“ Approach – LIMES Interface – Assisted Linking LOD2 Webinar . 20.03.2012 . Page 5 http://lod2.eu
  • 6. Creating Knowledge out of Interlinked Data Inter- linking/ Fusing Linked Data Lifecycle Manual Classifi- revision/ cation/ authoring Enrichment Storage/ Linked Data Quality Querying Lifecycle Analysis Evolution / Extraction Repair Search/ Browsing/ Exploration LOD2 Webinar . 20.03.2012 . Page 6 http://lod2.eu
  • 7. Creating Knowledge out of Interlinked Data LOD2 Services LOD2 Stack UI components Sindice Sig.ma Browse & LOD2 Stack Semantic Structure Authoring GovData.eu eGovernment LOD2 Stack APIs Portal and components Interlinking API Exalead Enterprise Search DXX LIMES SILK Web Search Enrichment and Repair API Multi-Domain Ontology DL-Learner ORE LOD2 STACK API Knowledge Base Fusion API Create Wolters Kluwer Deutschland Structure SemMF WIQA LOD2 applied to Media and Publishing Link Fuse Knowledge Store API LOD Cloud hosted on OpenLink's Virtuoso Query and Browsing capability Virtuoso + MonetDB LOD Cloud: Access interfaces: Knowledge Storage Layer Linked Data SPARQL DUMPS Triplify, D2R Central LOD2 Services Distributed/Local LOD2 Components LOD2 Webinar . 20.03.2012 . Page 7 http://lod2.eu
  • 8. Creating Knowledge out of Interlinked Data Link Discovery • Characteristics – Very large data sets – Complex data sets • Problems – Runtime – Complex Specifications • Solutions – Time-efficient computation – Assistance during configuration – Machine learning for creating link specifications LOD2 Webinar . 20.03.2012 . Page 8 http://lod2.eu
  • 9. Creating Knowledge out of Interlinked Data LIMES • Declarative Link Discovery Framework • Tuned towards efficiency and extensibility • Set-theoretical grammar for specifying links • Time-efficient mappers for single data types • Machine learning for detecting link specs LOD2 Webinar . 20.03.2012 . Page 9 http://lod2.eu
  • 10. Creating Knowledge out of Interlinked Data Architecture Machine Learning LOD2 Webinar . 20.03.2012 . Page 10 http://lod2.eu
  • 11. Creating Knowledge out of Interlinked Data Workflow LOD2 Webinar . 20.03.2012 . Page 11 http://lod2.eu
  • 12. Creating Knowledge out of Interlinked Data Workflow Hybrid approach Time-efficient Rich grammar mappers LOD2 Webinar . 20.03.2012 . Page 12 http://lod2.eu
  • 13. Creating Knowledge out of Interlinked Data LIMES Link Specifications 1. Metadata 2. Source and Target 3. Similarity Measure 4. Acceptance Conditions 5. Review Conditions 6. Execution Mode 7. Output Format LOD2 Webinar . 20.03.2012 . Page 13 http://lod2.eu
  • 14. Creating Knowledge out of Interlinked Data LIMES Link Specifications 1. Metadata 2. Source and Target 3. Similarity Measure 4. Acceptance Conditions 5. Review Conditions 6. Execution Mode 7. Output Format LOD2 Webinar . 20.03.2012 . Page 14 http://lod2.eu
  • 15. Creating Knowledge out of Interlinked Data LIMES Link Specifications 1. Metadata 2. Source and Target 3. Similarity Measure 4. Acceptance Conditions 5. Review Conditions 6. Execution Mode 7. Output Format LOD2 Webinar . 20.03.2012 . Page 15 http://lod2.eu
  • 16. Creating Knowledge out of Interlinked Data LIMES Link Specifications • Preprocessing functions – Strings, numerical values – Data converters • Similarity Measures Trigram – String – Numerical values lowerCase label label LOD2 Webinar . 20.03.2012 . Page 16 http://lod2.eu
  • 17. Creating Knowledge out of Interlinked Data LIMES Link Specifications • Operators – Measure operators – Spec operators MAX Trigram Trigram label label label name LOD2 Webinar . 20.03.2012 . Page 17 http://lod2.eu
  • 18. Creating Knowledge out of Interlinked Data LIMES Link Specifications • Operators – Measure operators OR – Spec operators Filter Filter Trigram Trigram label label label name LOD2 Webinar . 20.03.2012 . Page 18 http://lod2.eu
  • 19. Creating Knowledge out of Interlinked Data LIMES Link Specifications 1. Metadata 2. Source and Target 3. Similarity Measure 4. Acceptance Conditions 5. Review Conditions 6. Execution Mode 7. Output Format LOD2 Webinar . 20.03.2012 . Page 19 http://lod2.eu
  • 20. Creating Knowledge out of Interlinked Data Geeky approach: XML • Task: Link drugs and ingredients – Source: Dailymed – Target: Drugbank – Features • Definition of source, target, measures • Using property chains for linking • Using preprocessing LOD2 Webinar . 20.03.2012 . Page 20 http://lod2.eu
  • 21. Creating Knowledge out of Interlinked Data LIMES Native Interface • Task: Link drugs across knowledge bases – Source: DBpedia – Target: Drugbank – Features • Definition of complex measures LOD2 Webinar . 20.03.2012 . Page 21 http://lod2.eu
  • 22. Creating Knowledge out of Interlinked Data LIMES Native Interface • OR(trigram(x.rdfs:label, y.drugbank:genericName)|0.8, trigram(x.rdfs:label, y.rdfs:label)|0.8) OR Filter Filter Trigram Trigram label label label genericName LOD2 Webinar . 20.03.2012 . Page 22 http://lod2.eu
  • 23. Creating Knowledge out of Interlinked Data COLANUT • Task: Link diseases across knowledge bases – Source: Diseasome – Target: Sider – Features • Assisted linking • Definition of complex measures LOD2 Webinar . 20.03.2012 . Page 23 http://lod2.eu
  • 24. Creating Knowledge out of Interlinked Data Further Information • Technical Details – Requirements: Java 1.6 – License: http://creativecommons.org/licenses/ by-nc-sa/3.0/ • Technical papers – Axel-Cyrille Ngonga Ngomo: A Time-Efficient Hybrid Approach to Link Discovery. In: Proceedings of the sixth international workshop on Ontology Matching, 2011 – Axel-Cyrille Ngonga Ngomo und Klaus Lyko: EAGLE: Efficient Active Learning of Link Specifications using Genetic Programming. In: Proceedings of ESWC 2012 – Axel-Cyrille Ngonga Ngomo, Jens Lehmann, Sören Auer und Konrad Höffner: RAVEN -- Active Learning of Link Specifications. In: Proceedings of OM@ISWC LOD2 Webinar . 20.03.2012 . Page 24 http://lod2.eu
  • 25. Creating Knowledge out of Interlinked Data Credits Jingle Axel Ngonga Coordination Thomas Thurner Martin Kaltenböck Moderation Martin Kaltenböck Presented by Axel Ngonga http://bis.uni-leipzig.de/AxelNgonga ngonga@informatik.uni-leipzig.de LOD2 Webinar . 29.11.2011 . Page 25 http://lod2.eu
  • 26. Creating Knowledge out of Interlinked Data Hope you enjoyed staying with us – if you need more detailed information, visit us at www.lod2.eu and let us know how we can improve to meet your expectations! Don’t forget to register for our next webinar 24.04.2012 – D2R (University of Leipzig) http://lod2.eu LOD2 Webinar . 29.11.2011 . Page 26 http://lod2.eu