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Tips to search the literature Concepts Patrice X. CHALON, Msc Knowledge manager, Centre fédéral d'expertise des soins de santé (KCE) 2010-09-10 Patrice X. Chalon
Approach ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Source: Guyatt G, Evidence-Based Medicine Working Group. Users' guides to the medical literature : a manual for evidence-based clinical practice. 2nd ed. New York: McGraw-Hill Medical; 2008. 2010-09-10 Patrice X. Chalon
1. IDENTIFY YOUR PROBLEM Image source : http://www.flickr.com/photos/crystaljingsr/3914729343/ 2010-09-10 Patrice X. Chalon
Example 2010-09-10 Patrice X. Chalon
2. DEFINE A  STRUCTURED QUESTION Image source : http://www.flickr.com/photos/crystaljingsr/3915514014 2010-09-10 Patrice X. Chalon
Frameworks for structured questions Image source : http://www.flickr.com/photos/nguyendai/502168391 2010-09-10 Patrice X. Chalon PICO SPICE ECLISPSE Patient Setting Expectations Intervention Perspective Client group Comparison Intervention Location Outcome Comparison Impact Evaluation Professionals Involved Service Evaluation
Example Source : Horsmans Y, Thiry N, le Polain M, Adler M, Colle I, Delwaide J, Michielsen P, Orlent H, Van Damme  P, Hulstaert F. Rapport coût-efficacité du traitement antiviral de l’hépatite B chronique en Belgique. Partie 1: Examen de la littérature et résultats d’une étude nationale. Health Technology Assessment (HTA). Bruxelles: Centre fédéral d’expertise des soins de santé (KCE). 2010. KCE Reports 127B.  D/2010/10.2738/23. 2010-09-10 Patrice X. Chalon
Example (cont.) Patient ,[object Object],[object Object],[object Object],[object Object],Intervention ,[object Object],[object Object],[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon
TRUNCATION 2010-09-10 Patrice X. Chalon Variants Economical vs Economics Economic* 0-n Singular vs Plural Stent vs Stents Stent? 0-1 EN-us vs EN-uk Hematology vs Haematology H?ematology 0-1 Prefixes Pre natal vs prenatal vs pre-natal Pre?natal 0-1
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],BOOLEANS 2010-09-10 Patrice X. Chalon
BOOLEANS (cont.) OR AND 2010-09-10 Patrice X. Chalon
BOOLEANS (cont.) NOT Image source : http://www.flickr.com/photos/groume/4612564926/ 2010-09-10 Patrice X. Chalon
Example (cont.) (CHB  OR  (Hepatitis B  ADJ2  Chronic * ))  AND   (NA  OR  (Nuclo ? ide  ADJ2  analogue)  OR  (Interferon  ADJ3  therap * ) ) 2010-09-10 Patrice X. Chalon
3. FIND THE BEST EVIDENCE Image souyrce : http://www.flickr.com/photos/crystaljingsr/3915514724 2010-09-10 Patrice X. Chalon
Evidence pyramid Based on: http://smlweb.aub.edu.lb/Tutorial.aspx?file=Tutorials/principles.html and  http://nyu.libguides.com/content.php?pid=27011&sid=234199#systematic 2010-09-10 Patrice X. Chalon Non filtered information Filtered information
Type of Source of Evidence Source. CEBAM 2010-09-10 Patrice X. Chalon
Search strategy quadrant 2010-09-10 Patrice X. Chalon pertinent Not pertinent Not identified SILENCE identified NOISE
Sensitive vs Specific search Sensitive ,[object Object],[object Object],Specific ,[object Object],[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon Source : NHS FIFE LIBRARY SERVICES: Guide to Literature Searching. Available from: http://www.nhsfifelibraries.scot.nhs.uk/publications/litsearching.doc
Documentation of the search 2010-09-10 Patrice X. Chalon
Bibliographic indexes Index to articles Image source : http://www.nlm.nih.gov/hmd/sowhatsnew/images/3a7-a.jpg 2010-09-10 Patrice X. Chalon
Content of a record So = Jo, Dp, Vo, Is, Pg   Eur J Nucl Med, 2000, 27 (1): 91-7 Au  Mijnhout GS, Hooft L, van Tulder MW, Deville WL, Teule GJ and Hoekstra OS  Ti How to perform a comprehensive search for FDG-PET literature .  Ab In this study, a comprehensive, unbiassed search strategy for identifying literature on fluorine-18 fluorodeoxyglucose positron emission tomography (FDG-PET) in Medline, Embase and Current Contents was developed, … Kw, SH. Abstracting and Indexing ; Databases, Bibliographic ; Fludeoxyglucose F 18/ diagnostic use ; Fluorine Radioisotopes/ diagnostic use; Human ; Medline ; Periodicals ; Radiopharmaceuticals/ diagnostic use ; Research ; Subject Headings ; Tomography, Emission-Computed Others  : Ad, ISSN, La, URL, References,… Manual  / Automatic ? Traduced title ? Accurate ? Keywords or  Subject Headings ? Source: MedLine Particle ! Manual  / Automatic ? 2010-09-10 Patrice X. Chalon
THESAURUS Image source : http://www.zazzle.be/dinosaure_de_thesaurus_tapis_souris-144708844640520683 2010-09-10 Patrice X. Chalon
What is this ? Image source : http://www.flickr.com/photos/ericbegin/4301731953 2010-09-10 Patrice X. Chalon
Taxonomy ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Source : http://fwie.fw.vt.edu/WWW/macsis/lists/M040093.htm 2010-09-10 Patrice X. Chalon
Thesaurus : definition ,[object Object],2010-09-10 Patrice X. Chalon Source: Dictionary French Larousse. Available from http://www.larousse.com/en/dictionaries/french/thesaurus
Thesaurus : flavors ,[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon
Thesaurus : relationaships Source : http://www.motbis.fr 2010-09-10 Patrice X. Chalon
Thesaurus : evaluation Advantages ,[object Object],[object Object],Disadvantages ,[object Object],[object Object],2010-09-10 Patrice X. Chalon
MedLine Indexing They are working for you! Image source : http://ihm.nlm.nih.gov/images/A17410  2010-09-10 Patrice X. Chalon
Indexing process ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Source : The basics of medical subject headings (MeSH ® ) in MEDLINE ® /PubMed available from  http://www.Nlm.Nih.Gov /bsd/disted/mesh/index.Html 2010-09-10 Patrice X. Chalon
Finding terms ,[object Object],[object Object],[object Object],Source : The basics of medical subject headings (MeSH ® ) in MEDLINE ® /PubMed available from  http://www.Nlm.Nih.Gov/bsd/disted/mesh/index.Html 2010-09-10 Patrice X. Chalon
Example Source: http://www.ncbi.nlm.nih.gov/mesh/68006509 2010-09-10 Patrice X. Chalon
Major topics ,[object Object],[object Object],[object Object],Source : The basics of medical subject headings (MeSH ® ) in MEDLINE ® /PubMed available from  http://www.Nlm.Nih.Gov/bsd/disted/mesh/index.Html 2010-09-10 Patrice X. Chalon
Coordination ,[object Object],[object Object],[object Object],Source : The basics of medical subject headings (MeSH ® ) in MEDLINE ® /PubMed available from  http://www.Nlm.Nih.Gov /bsd/disted/mesh/index.Html 2010-09-10 Patrice X. Chalon
Example 2010-09-10 Patrice X. Chalon
Rule of three ,[object Object],[object Object],Source : The basics of medical subject headings (MeSH ® ) in MEDLINE ® /PubMed available from  http://www.Nlm.Nih.Gov /bsd/disted/mesh/index.Html 2010-09-10 Patrice X. Chalon
Example Source : http://www.ncbi.nlm.nih.gov/mesh/68006521 2010-09-10 Patrice X. Chalon
DATABASES FOR ECONOMIC EVALUATIONS Selection of  2010-09-10 Patrice X. Chalon Image source : http://www.flickr.com/photos/infomofo/4494714180/
Database…S? 2010-09-10 Patrice X. Chalon ,[object Object],Source: L e traitement médicamenteux de l'insuffisance cardiaque par 3 grands groupes pharmacologiques :  Evaluation de la complémentarité des outils bibliographiques du domaine biomédical de l’Université de Liège.   Chalon P, 2002, Report. 1999-2001 Diurétiques Digitaliques Beta-bloquants Medline 619 287 666 Chemical Abstracts Spécifiques (%) Journaux suppl  (avec IF) 780 +161 (20.6) + 35 (6) 146 + 81 (22) + 23 (3) 170 + 103 (13.4) + 19 (1) Current Contents Spécifiques (%) Journaux  suppl (avec IF) 472 + 99 (13.8) + 15 (12) 162 + 27 (8.6) + 6 (3) 717 + 445 (40.1) + 13 (9)
Database characteristics ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon
SEARCH INTERFACES PubMed, CRD, Cochrane Library, OVIDSP, Embase.com, CSA, …. 2010-09-10 Patrice X. Chalon
Search interface characteristics ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon
SPECIAL QUERIES Search filters, hedges, Clinical queries, … 2010-09-10 Patrice X. Chalon Source : http://kce.docressources.info/opac/index.php?lvl=categ_see&id=1579
About Hedges ,[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon Source : http://hiru.mcmaster.ca/hiru/HIRU_Hedges_home.aspx
COMPLEMENTARY SOURCES Last but not least 2010-09-10 Patrice X. Chalon Image source : http://www.flickr.com/photos/redjar/113026147
[object Object],[object Object],[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon
JOURNAL EVALUATION Impact factors etc…. 2010-09-10 Patrice X. Chalon Image source : http://www.flickr.com/photos/infomofo/4494714180/
Impact factor discussed ,[object Object],[object Object],2010-09-10 Patrice X. Chalon Source: Eugene Garfield. The Agony and the Ecstasy—The History and Meaning of the Journal Impact Factor. International Congress on Peer Review And Biomedical Publication Chicago,  September 16, 2005
Subject list : Library science 2010-09-10 Patrice X. Chalon Source : http://www.scimagojr.com/
Journal evaluation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],2010-09-10 Patrice X. Chalon
Open Access ,[object Object],2010-09-10 Patrice X. Chalon Source: http://www.earlham.edu/~peters/fos/boaifaq.htm#openaccess
Thank you! Acknowledgments : Micheline Gobert, CEBAM;  Nancy Thiry, Catherine Garreyn, KCE Copyrights :  This work is released under Creative Commons License 2010-09-10 Patrice X. Chalon

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Searching the Biomedical Literature : concepts

  • 1. Tips to search the literature Concepts Patrice X. CHALON, Msc Knowledge manager, Centre fédéral d'expertise des soins de santé (KCE) 2010-09-10 Patrice X. Chalon
  • 2.
  • 3. 1. IDENTIFY YOUR PROBLEM Image source : http://www.flickr.com/photos/crystaljingsr/3914729343/ 2010-09-10 Patrice X. Chalon
  • 5. 2. DEFINE A STRUCTURED QUESTION Image source : http://www.flickr.com/photos/crystaljingsr/3915514014 2010-09-10 Patrice X. Chalon
  • 6. Frameworks for structured questions Image source : http://www.flickr.com/photos/nguyendai/502168391 2010-09-10 Patrice X. Chalon PICO SPICE ECLISPSE Patient Setting Expectations Intervention Perspective Client group Comparison Intervention Location Outcome Comparison Impact Evaluation Professionals Involved Service Evaluation
  • 7. Example Source : Horsmans Y, Thiry N, le Polain M, Adler M, Colle I, Delwaide J, Michielsen P, Orlent H, Van Damme P, Hulstaert F. Rapport coût-efficacité du traitement antiviral de l’hépatite B chronique en Belgique. Partie 1: Examen de la littérature et résultats d’une étude nationale. Health Technology Assessment (HTA). Bruxelles: Centre fédéral d’expertise des soins de santé (KCE). 2010. KCE Reports 127B. D/2010/10.2738/23. 2010-09-10 Patrice X. Chalon
  • 8.
  • 9. TRUNCATION 2010-09-10 Patrice X. Chalon Variants Economical vs Economics Economic* 0-n Singular vs Plural Stent vs Stents Stent? 0-1 EN-us vs EN-uk Hematology vs Haematology H?ematology 0-1 Prefixes Pre natal vs prenatal vs pre-natal Pre?natal 0-1
  • 10.
  • 11. BOOLEANS (cont.) OR AND 2010-09-10 Patrice X. Chalon
  • 12. BOOLEANS (cont.) NOT Image source : http://www.flickr.com/photos/groume/4612564926/ 2010-09-10 Patrice X. Chalon
  • 13. Example (cont.) (CHB OR (Hepatitis B ADJ2 Chronic * )) AND (NA OR (Nuclo ? ide ADJ2 analogue) OR (Interferon ADJ3 therap * ) ) 2010-09-10 Patrice X. Chalon
  • 14. 3. FIND THE BEST EVIDENCE Image souyrce : http://www.flickr.com/photos/crystaljingsr/3915514724 2010-09-10 Patrice X. Chalon
  • 15. Evidence pyramid Based on: http://smlweb.aub.edu.lb/Tutorial.aspx?file=Tutorials/principles.html and http://nyu.libguides.com/content.php?pid=27011&sid=234199#systematic 2010-09-10 Patrice X. Chalon Non filtered information Filtered information
  • 16. Type of Source of Evidence Source. CEBAM 2010-09-10 Patrice X. Chalon
  • 17. Search strategy quadrant 2010-09-10 Patrice X. Chalon pertinent Not pertinent Not identified SILENCE identified NOISE
  • 18.
  • 19. Documentation of the search 2010-09-10 Patrice X. Chalon
  • 20. Bibliographic indexes Index to articles Image source : http://www.nlm.nih.gov/hmd/sowhatsnew/images/3a7-a.jpg 2010-09-10 Patrice X. Chalon
  • 21. Content of a record So = Jo, Dp, Vo, Is, Pg Eur J Nucl Med, 2000, 27 (1): 91-7 Au Mijnhout GS, Hooft L, van Tulder MW, Deville WL, Teule GJ and Hoekstra OS Ti How to perform a comprehensive search for FDG-PET literature . Ab In this study, a comprehensive, unbiassed search strategy for identifying literature on fluorine-18 fluorodeoxyglucose positron emission tomography (FDG-PET) in Medline, Embase and Current Contents was developed, … Kw, SH. Abstracting and Indexing ; Databases, Bibliographic ; Fludeoxyglucose F 18/ diagnostic use ; Fluorine Radioisotopes/ diagnostic use; Human ; Medline ; Periodicals ; Radiopharmaceuticals/ diagnostic use ; Research ; Subject Headings ; Tomography, Emission-Computed Others : Ad, ISSN, La, URL, References,… Manual / Automatic ? Traduced title ? Accurate ? Keywords or Subject Headings ? Source: MedLine Particle ! Manual / Automatic ? 2010-09-10 Patrice X. Chalon
  • 22. THESAURUS Image source : http://www.zazzle.be/dinosaure_de_thesaurus_tapis_souris-144708844640520683 2010-09-10 Patrice X. Chalon
  • 23. What is this ? Image source : http://www.flickr.com/photos/ericbegin/4301731953 2010-09-10 Patrice X. Chalon
  • 24.
  • 25.
  • 26.
  • 27. Thesaurus : relationaships Source : http://www.motbis.fr 2010-09-10 Patrice X. Chalon
  • 28.
  • 29. MedLine Indexing They are working for you! Image source : http://ihm.nlm.nih.gov/images/A17410 2010-09-10 Patrice X. Chalon
  • 30.
  • 31.
  • 33.
  • 34.
  • 36.
  • 37. Example Source : http://www.ncbi.nlm.nih.gov/mesh/68006521 2010-09-10 Patrice X. Chalon
  • 38. DATABASES FOR ECONOMIC EVALUATIONS Selection of 2010-09-10 Patrice X. Chalon Image source : http://www.flickr.com/photos/infomofo/4494714180/
  • 39.
  • 40.
  • 41. SEARCH INTERFACES PubMed, CRD, Cochrane Library, OVIDSP, Embase.com, CSA, …. 2010-09-10 Patrice X. Chalon
  • 42.
  • 43. SPECIAL QUERIES Search filters, hedges, Clinical queries, … 2010-09-10 Patrice X. Chalon Source : http://kce.docressources.info/opac/index.php?lvl=categ_see&id=1579
  • 44.
  • 45. COMPLEMENTARY SOURCES Last but not least 2010-09-10 Patrice X. Chalon Image source : http://www.flickr.com/photos/redjar/113026147
  • 46.
  • 47. JOURNAL EVALUATION Impact factors etc…. 2010-09-10 Patrice X. Chalon Image source : http://www.flickr.com/photos/infomofo/4494714180/
  • 48.
  • 49. Subject list : Library science 2010-09-10 Patrice X. Chalon Source : http://www.scimagojr.com/
  • 50.
  • 51.
  • 52. Thank you! Acknowledgments : Micheline Gobert, CEBAM; Nancy Thiry, Catherine Garreyn, KCE Copyrights : This work is released under Creative Commons License 2010-09-10 Patrice X. Chalon

Notas del editor

  1. Nuclo?ide = nucleoside or nucleotide
  2. Physician NEAR relationship retrieves records that contain the words in the same field E.g. both words in the Title; in the abstract, and so on physician adj5 relationship retrieves records that contain the words physician and relationship within five words of each other in either direction . E.g. physician patient relationship , patient physician relationship , relationship of the physician to the patient , and so on. Source: http://www.ovid.com.vdicp.health.fgov.be:8080/site/help/documentation/ospb/en/syntax.htm#operators
  3. The OR operator lets you retrieve records that contain any of your search terms. For example, the search heart attack or myocardial infarction retrieves records that contain heart attack, myocardial infarction or both terms. Results are all inclusive The AND operator lets you retrieve only those records that include all of your search terms. For example, the search blood pressure and stroke retrieves only those records that contain both terms blood pressure and stroke together in the same record. Results exclude records that do not contain both terms.
  4. The NOT operator lets you retrieve records that contain your first term but exclude the second term. In this way, you can restrict the scope of your results. For example, the search health reform not health maintenance organizations retrieves only those records that contain the term health reform but exclude the term health maintenance organizations. http://www.ovid.com.vdicp.health.fgov.be:8080/site/help/documentation/ospb/en/syntax.htm#operators 1 deoxyglucose.ti.ab.rw.sh 2 deoxy-glucose.ti.ab.rw.sh 3 fluorodeoxyglucose.ti.ab.rw.sh 4 18fluorodeoxyglucose.ti.ab.rw.sh 5 fluodeoxyglucose.ti.ab.rw.sh 6 fdg$.ti.ab.rw.sh 7 18fdg.ti.ab.rw.sh 8 f-18-dg.ti.ab.rw.sh 9 fluoro-2-deoxy-d-glucose.ti.ab.rw.sh 10 2fluoro-2deoxyglucose.ti.ab.rw.sh 11 fluoro-d-glucose.ti.ab.rw.sh 12 or/1-11
  5. Nuclo?ide = nucleoside or nucleotide
  6. Filtered resources appraise the quality of studies and often make recommendations for practice Unfiltered resources: Evidence is not always available via filtered resources. Searching the primary literature may be required. It is possible to use specific search strategies in MEDLINE and other databases to retrieve the best available evidence.
  7. Sources quaternaires : Clinical guidelines/réunions de consensus/standards Sources tertiaires : Revues systématiques/méta-analyses/publication EBM Sources secondaires : Outils de recherche dans la littérature Sources primaires : Revues publiant les études scientifiques
  8. Oiseau Rapace [EP oiseau de proie] Rapace Diurne [EP buse:rapace, faucon] Aigle Vautour Rapace Nocturne …
  9. Time coverage Since when Source How many journal indexed ; Which kind of indexation (full vs selection)? Topics Content Which publication type? Indexation Thesaurus? Abstracts Always?