SlideShare a Scribd company logo

RDAP 033111

•Download as PPT, PDF•
•
Philip Bourne
Philip Bourne

Presentation on the RCSB PDB at the 2nd Research Data Access and Preservation (RDAP) Summit Denver Colorado March 31, 2011

Education
1 of 20
A Few RDAP Thoughts Based on Experience with The RCSB Protein Data Bank www.rcsb.org Philip E. Bourne UCSD [email_address] 3/31/11 RDAP Summit 2011
Disclaimer ,[object Object],[object Object],3/31/11 RDAP Summit 2011
What is the Protein Data Bank (PDB)? ,[object Object],[object Object],[object Object],[object Object],[object Object],3/31/11
PDB Total Contents by Year Number of released entries Year 3/31/11
Why We Think We Are Successful? ,[object Object]
Metric of Success - A Research Tool for Influenza * http://www.cdc.gov/h1n1flu/estimates/April_March_13.htm Structure Summary page activity for H1N1 Influenza related structures * 3B7E: Neuraminidase of A/Brevig Mission/1/1918 H1N1 strain in complex with zanamivir Jan. 2008 Jan. 2009 Jan. 2010 Jul. 2009 Jul. 2008 Jul. 2010 1RUZ: 1918 H1 Hemagglutinin
Looking Back Over the Past 12 Years – In General ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Looking Back Over the Past 12 Years – Infrastructure ,[object Object],[object Object],[object Object],[object Object],[object Object],3/31/11 RDAP Summit 2011 Bluhm et al. 2011 Quality Assurance doi: 10.1093/database/bar003
Looking Back Over the Past 12 Years – Data & Data Management ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],3/31/11 RDAP Summit 2011
Trends Today ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],3/31/11 RDAP Summit 2011
Website Performance Improvements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Literature Integration – The Dream ,[object Object],[object Object],[object Object],[object Object],1. A link brings up figures from the paper 0. Full text of PLoS papers stored in a database 2. Clicking the paper figure retrieves data from the PDB which is analyzed 3. A composite view of journal and database content results 4. The composite view has links to pertinent blocks of literature text and back to the PDB 1. 2. 3. 4. The Knowledge and Data Cycle PLoS Comp. Biol. 2005 1(3) e34
Example of Interoperability: The Database View www.rcsb.org/pdb/explore/literature.do?structureId=1TIM BMC Bioinformatics 2010 11:220
Example of Interoperability – The Literature View From Anita de Waard, Elsevier
Semantic Tagging & Widgets are a Powerful Tool to Integrate Data and Knowledge of that Data, But as Yet Not Used Much Will Widgets and Semantic Tagging Change Computational Biology? PLoS Comp. Biol. 6(2) e1000673
Semantic Tagging of Database Content in The Literature or Elsewhere http://www.rcsb.org/pdb/static.do?p=widgets/widgetShowcase.jsp PLoS Comp. Biol. 6(2) e1000673 Semantic Tagging
PDBMobile ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Objective: PDB Data Access On-The-Go
PDBMobile ,[object Object],[object Object],[object Object],[object Object],Tight Integration with MyPDB
Future ,[object Object],[object Object],[object Object]
Acknowledgements Funding Agencies: NSF, NIGMS, DOE, NLM, NCI, NCRR, NIBIB, NINDS, NIDDK 3/31/11 RDAP Summit 2011

Recommended

Highlights from NIH Data Science
Highlights from NIH Data ScienceHighlights from NIH Data Science
Highlights from NIH Data SciencePhilip Bourne
 
Understanding the Big Data Enterprise
Understanding the Big Data EnterpriseUnderstanding the Big Data Enterprise
Understanding the Big Data EnterprisePhilip Bourne
 
Big Data as a Catalyst for Collaboration & Innovation
Big Data as a Catalyst for Collaboration & InnovationBig Data as a Catalyst for Collaboration & Innovation
Big Data as a Catalyst for Collaboration & InnovationPhilip Bourne
 
Making Biomedical Research More Like Airbnb
Making Biomedical Research More Like AirbnbMaking Biomedical Research More Like Airbnb
Making Biomedical Research More Like AirbnbPhilip Bourne
 
Open Science: Some Possible Actions by University Leaders on Behalf of Resear...
Open Science: Some Possible Actions by University Leaders on Behalf of Resear...Open Science: Some Possible Actions by University Leaders on Behalf of Resear...
Open Science: Some Possible Actions by University Leaders on Behalf of Resear...Philip Bourne
 
Poster: Very Open Data Project
Poster: Very Open Data ProjectPoster: Very Open Data Project
Poster: Very Open Data ProjectEdward Blurock
 
Poster RDAP13: Data information literacy multiple paths to a single goal
Poster RDAP13: Data information literacy multiple paths to a single goalPoster RDAP13: Data information literacy multiple paths to a single goal
Poster RDAP13: Data information literacy multiple paths to a single goalASIS&T
 
BD2K @ NIH - A Vision Through 2020
BD2K @ NIH - A Vision Through 2020BD2K @ NIH - A Vision Through 2020
BD2K @ NIH - A Vision Through 2020Philip Bourne
 

Recommended

Highlights from NIH Data Science
Highlights from NIH Data ScienceHighlights from NIH Data Science
Highlights from NIH Data SciencePhilip Bourne
 
Understanding the Big Data Enterprise
Understanding the Big Data EnterpriseUnderstanding the Big Data Enterprise
Understanding the Big Data EnterprisePhilip Bourne
 
Big Data as a Catalyst for Collaboration & Innovation
Big Data as a Catalyst for Collaboration & InnovationBig Data as a Catalyst for Collaboration & Innovation
Big Data as a Catalyst for Collaboration & InnovationPhilip Bourne
 
Making Biomedical Research More Like Airbnb
Making Biomedical Research More Like AirbnbMaking Biomedical Research More Like Airbnb
Making Biomedical Research More Like AirbnbPhilip Bourne
 
Open Science: Some Possible Actions by University Leaders on Behalf of Resear...
Open Science: Some Possible Actions by University Leaders on Behalf of Resear...Open Science: Some Possible Actions by University Leaders on Behalf of Resear...
Open Science: Some Possible Actions by University Leaders on Behalf of Resear...Philip Bourne
 
Poster: Very Open Data Project
Poster: Very Open Data ProjectPoster: Very Open Data Project
Poster: Very Open Data ProjectEdward Blurock
 
Poster RDAP13: Data information literacy multiple paths to a single goal
Poster RDAP13: Data information literacy multiple paths to a single goalPoster RDAP13: Data information literacy multiple paths to a single goal
Poster RDAP13: Data information literacy multiple paths to a single goalASIS&T
 
BD2K @ NIH - A Vision Through 2020
BD2K @ NIH - A Vision Through 2020BD2K @ NIH - A Vision Through 2020
BD2K @ NIH - A Vision Through 2020Philip Bourne
 
Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...
Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...
Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...ASIS&T
 
Next Generation Preprint Service
Next Generation Preprint ServiceNext Generation Preprint Service
Next Generation Preprint ServicePhilip Bourne
 
Why science needs open data – Jisc and CNI conference 10 July 2014
Why science needs open data – Jisc and CNI conference 10 July 2014Why science needs open data – Jisc and CNI conference 10 July 2014
Why science needs open data – Jisc and CNI conference 10 July 2014Jisc
 
Data cite
Data citeData cite
Data citeVishwas Chavan
 
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality Paul Courtney
 
The Analytics and Data Science Landscape
The Analytics and Data Science LandscapeThe Analytics and Data Science Landscape
The Analytics and Data Science LandscapePhilip Bourne
 
Data Science - Poster - Kirk Borne - RDAP12
Data Science - Poster - Kirk Borne - RDAP12Data Science - Poster - Kirk Borne - RDAP12
Data Science - Poster - Kirk Borne - RDAP12ASIS&T
 
NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...
NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...
NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...National Information Standards Organization (NISO)
 
ACRL STS Liaisons Forum - AIBS
ACRL STS Liaisons Forum - AIBSACRL STS Liaisons Forum - AIBS
ACRL STS Liaisons Forum - AIBSVirginia Pannabecker
 
Knoesis Student Achievement
Knoesis Student AchievementKnoesis Student Achievement
Knoesis Student AchievementArtificial Intelligence Institute at UofSC
 
TDWG_2010_Chavan_data_citation
TDWG_2010_Chavan_data_citationTDWG_2010_Chavan_data_citation
TDWG_2010_Chavan_data_citationVishwas Chavan
 
NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...
NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...
NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...National Information Standards Organization (NISO)
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...National Information Standards Organization (NISO)
 
CINECA webinar slides: Making cohort data FAIR
CINECA webinar slides: Making cohort data FAIRCINECA webinar slides: Making cohort data FAIR
CINECA webinar slides: Making cohort data FAIRCINECAProject
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...National Information Standards Organization (NISO)
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...National Information Standards Organization (NISO)
 
Data Sharing & Data Citation
Data Sharing & Data CitationData Sharing & Data Citation
Data Sharing & Data CitationMicah Altman
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...National Information Standards Organization (NISO)
 
CINECA webinar slides: Open science through fair health data networks dream o...
CINECA webinar slides: Open science through fair health data networks dream o...CINECA webinar slides: Open science through fair health data networks dream o...
CINECA webinar slides: Open science through fair health data networks dream o...CINECAProject
 
Linked Data: Opportunities for Entrepreneurs
Linked Data: Opportunities for EntrepreneursLinked Data: Opportunities for Entrepreneurs
Linked Data: Opportunities for Entrepreneurs3 Round Stones
 
Visual Analytics talk at ISMB2013
Visual Analytics talk at ISMB2013Visual Analytics talk at ISMB2013
Visual Analytics talk at ISMB2013Jan Aerts
 
Visual Analytics in Omics: why, what, how?
Visual Analytics in Omics: why, what, how?Visual Analytics in Omics: why, what, how?
Visual Analytics in Omics: why, what, how?Jan Aerts
 

More Related Content

What's hot

Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...
Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...
Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...ASIS&T
 
Next Generation Preprint Service
Next Generation Preprint ServiceNext Generation Preprint Service
Next Generation Preprint ServicePhilip Bourne
 
Why science needs open data – Jisc and CNI conference 10 July 2014
Why science needs open data – Jisc and CNI conference 10 July 2014Why science needs open data – Jisc and CNI conference 10 July 2014
Why science needs open data – Jisc and CNI conference 10 July 2014Jisc
 
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality Paul Courtney
 
The Analytics and Data Science Landscape
The Analytics and Data Science LandscapeThe Analytics and Data Science Landscape
The Analytics and Data Science LandscapePhilip Bourne
 
Data Science - Poster - Kirk Borne - RDAP12
Data Science - Poster - Kirk Borne - RDAP12Data Science - Poster - Kirk Borne - RDAP12
Data Science - Poster - Kirk Borne - RDAP12ASIS&T
 
TDWG_2010_Chavan_data_citation
TDWG_2010_Chavan_data_citationTDWG_2010_Chavan_data_citation
TDWG_2010_Chavan_data_citationVishwas Chavan
 
CINECA webinar slides: Making cohort data FAIR
CINECA webinar slides: Making cohort data FAIRCINECA webinar slides: Making cohort data FAIR
CINECA webinar slides: Making cohort data FAIRCINECAProject
 
Data Sharing & Data Citation
Data Sharing & Data CitationData Sharing & Data Citation
Data Sharing & Data CitationMicah Altman
 
CINECA webinar slides: Open science through fair health data networks dream o...
CINECA webinar slides: Open science through fair health data networks dream o...CINECA webinar slides: Open science through fair health data networks dream o...
CINECA webinar slides: Open science through fair health data networks dream o...CINECAProject
 
Linked Data: Opportunities for Entrepreneurs
Linked Data: Opportunities for EntrepreneursLinked Data: Opportunities for Entrepreneurs
Linked Data: Opportunities for Entrepreneurs3 Round Stones
 

What's hot (20)

Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...
Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...
Poster RDAP13: A Workflow for Depositing to a Research Data Repository: A Cas...
 
Next Generation Preprint Service
Next Generation Preprint ServiceNext Generation Preprint Service
Next Generation Preprint Service
 
Why science needs open data – Jisc and CNI conference 10 July 2014
Why science needs open data – Jisc and CNI conference 10 July 2014Why science needs open data – Jisc and CNI conference 10 July 2014
Why science needs open data – Jisc and CNI conference 10 July 2014
 
Data cite
Data citeData cite
Data cite
 
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality
A VIVO VIEW OF CANCER RESEARCH: Dream, Vision and Reality
 
The Analytics and Data Science Landscape
The Analytics and Data Science LandscapeThe Analytics and Data Science Landscape
The Analytics and Data Science Landscape
 
Data Science - Poster - Kirk Borne - RDAP12
Data Science - Poster - Kirk Borne - RDAP12Data Science - Poster - Kirk Borne - RDAP12
Data Science - Poster - Kirk Borne - RDAP12
 
NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...
NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...
NISO Working Group Connection Live! Research Data Metrics Landscape: An Updat...
 
ACRL STS Liaisons Forum - AIBS
ACRL STS Liaisons Forum - AIBSACRL STS Liaisons Forum - AIBS
ACRL STS Liaisons Forum - AIBS
 
Knoesis Student Achievement
Knoesis Student AchievementKnoesis Student Achievement
Knoesis Student Achievement
 
TDWG_2010_Chavan_data_citation
TDWG_2010_Chavan_data_citationTDWG_2010_Chavan_data_citation
TDWG_2010_Chavan_data_citation
 
NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...
NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...
NISO/NFAIS Joint Virtual Conference: Connecting the Library to the Wider Wor...
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
 
CINECA webinar slides: Making cohort data FAIR
CINECA webinar slides: Making cohort data FAIRCINECA webinar slides: Making cohort data FAIR
CINECA webinar slides: Making cohort data FAIR
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
 
Data Sharing & Data Citation
Data Sharing & Data CitationData Sharing & Data Citation
Data Sharing & Data Citation
 
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
NISO Virtual Conference Scientific Data Management: Caring for Your Instituti...
 
CINECA webinar slides: Open science through fair health data networks dream o...
CINECA webinar slides: Open science through fair health data networks dream o...CINECA webinar slides: Open science through fair health data networks dream o...
CINECA webinar slides: Open science through fair health data networks dream o...
 
Linked Data: Opportunities for Entrepreneurs
Linked Data: Opportunities for EntrepreneursLinked Data: Opportunities for Entrepreneurs
Linked Data: Opportunities for Entrepreneurs
 

Viewers also liked

Visual Analytics talk at ISMB2013
Visual Analytics talk at ISMB2013Visual Analytics talk at ISMB2013
Visual Analytics talk at ISMB2013Jan Aerts
 
Visual Analytics in Omics: why, what, how?
Visual Analytics in Omics: why, what, how?Visual Analytics in Omics: why, what, how?
Visual Analytics in Omics: why, what, how?Jan Aerts
 
A Prlic - BioJava update
A Prlic - BioJava updateA Prlic - BioJava update
A Prlic - BioJava updateJan Aerts
 
L Fu - Dao: a novel programming language for bioinformatics
L Fu - Dao: a novel programming language for bioinformaticsL Fu - Dao: a novel programming language for bioinformatics
L Fu - Dao: a novel programming language for bioinformaticsJan Aerts
 
VIZBI 2014 - Visualizing Genomic Variation
VIZBI 2014 - Visualizing Genomic VariationVIZBI 2014 - Visualizing Genomic Variation
VIZBI 2014 - Visualizing Genomic VariationJan Aerts
 
The Future of the Internet Economy Egypt 2014
The Future of the Internet Economy Egypt 2014The Future of the Internet Economy Egypt 2014
The Future of the Internet Economy Egypt 2014Mahmoud A. Rabo
 
Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...
Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...
Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...Philip Bourne
 
Visualizing the Structural Variome (VMLS-Eurovis 2013)
Visualizing the Structural Variome (VMLS-Eurovis 2013)Visualizing the Structural Variome (VMLS-Eurovis 2013)
Visualizing the Structural Variome (VMLS-Eurovis 2013)Jan Aerts
 

Viewers also liked (9)

Visual Analytics talk at ISMB2013
Visual Analytics talk at ISMB2013Visual Analytics talk at ISMB2013
Visual Analytics talk at ISMB2013
 
Visual Analytics in Omics: why, what, how?
Visual Analytics in Omics: why, what, how?Visual Analytics in Omics: why, what, how?
Visual Analytics in Omics: why, what, how?
 
A Prlic - BioJava update
A Prlic - BioJava updateA Prlic - BioJava update
A Prlic - BioJava update
 
L Fu - Dao: a novel programming language for bioinformatics
L Fu - Dao: a novel programming language for bioinformaticsL Fu - Dao: a novel programming language for bioinformatics
L Fu - Dao: a novel programming language for bioinformatics
 
VIZBI 2014 - Visualizing Genomic Variation
VIZBI 2014 - Visualizing Genomic VariationVIZBI 2014 - Visualizing Genomic Variation
VIZBI 2014 - Visualizing Genomic Variation
 
D1_EstructProt_02
D1_EstructProt_02D1_EstructProt_02
D1_EstructProt_02
 
The Future of the Internet Economy Egypt 2014
The Future of the Internet Economy Egypt 2014The Future of the Internet Economy Egypt 2014
The Future of the Internet Economy Egypt 2014
 
Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...
Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...
Big Data and the Promise and Pitfalls when Applied to Disease Prevention and ...
 
Visualizing the Structural Variome (VMLS-Eurovis 2013)
Visualizing the Structural Variome (VMLS-Eurovis 2013)Visualizing the Structural Variome (VMLS-Eurovis 2013)
Visualizing the Structural Variome (VMLS-Eurovis 2013)
 

Similar to RDAP 033111

Bourne RDAP11 Data Publication Repositories
Bourne RDAP11 Data Publication RepositoriesBourne RDAP11 Data Publication Repositories
Bourne RDAP11 Data Publication RepositoriesASIS&T
 
Open Data Driven Scholarly Communication in 2020
Open Data Driven Scholarly Communication in 2020Open Data Driven Scholarly Communication in 2020
Open Data Driven Scholarly Communication in 2020Philip Bourne
 
Scholarly Communication for Bioinformatics Students
Scholarly Communication for Bioinformatics StudentsScholarly Communication for Bioinformatics Students
Scholarly Communication for Bioinformatics StudentsPhilip Bourne
 
Open Access NBIC Workshop April 19, 2011
Open Access NBIC Workshop April 19, 2011Open Access NBIC Workshop April 19, 2011
Open Access NBIC Workshop April 19, 2011Philip Bourne
 
Linked Data Generation for the University Data From Legacy Database
Linked Data Generation for the University Data From Legacy Database Linked Data Generation for the University Data From Legacy Database
Linked Data Generation for the University Data From Legacy Database dannyijwest
 
A_Logical_Design_Methodology_for_Relational_Databa.pdf
A_Logical_Design_Methodology_for_Relational_Databa.pdfA_Logical_Design_Methodology_for_Relational_Databa.pdf
A_Logical_Design_Methodology_for_Relational_Databa.pdfXANDERHERNANDEZ5
 
The Linked Data Lifecycle
The Linked Data LifecycleThe Linked Data Lifecycle
The Linked Data Lifecyclegeoknow
 
Cross-Community User Requirements and the Biodiversity Heritage Library
Cross-Community User Requirements and the Biodiversity Heritage LibraryCross-Community User Requirements and the Biodiversity Heritage Library
Cross-Community User Requirements and the Biodiversity Heritage LibraryChris Freeland
 
Big Data in Biomedicine – An NIH Perspective
Big Data in Biomedicine – An NIH PerspectiveBig Data in Biomedicine – An NIH Perspective
Big Data in Biomedicine – An NIH PerspectivePhilip Bourne
 
Linked Data and Users in Library - Does the library communicate efficiently?
Linked Data and Users in Library - Does the library communicate efficiently?Linked Data and Users in Library - Does the library communicate efficiently?
Linked Data and Users in Library - Does the library communicate efficiently?Hansung University
 
The PDB An Exemplar for Data Science To Date, But What About the Future?
The PDB An Exemplar for Data Science To Date, But What About the Future?The PDB An Exemplar for Data Science To Date, But What About the Future?
The PDB An Exemplar for Data Science To Date, But What About the Future?Philip Bourne
 
Developing Infrastructure to Support Closer Collaboration of Aggregators with...
Developing Infrastructure to Support Closer Collaboration of Aggregators with...Developing Infrastructure to Support Closer Collaboration of Aggregators with...
Developing Infrastructure to Support Closer Collaboration of Aggregators with...Nancy Pontika
 
Faceted Navigation (LACASIS Fall Workshop 2005)
Faceted Navigation (LACASIS Fall Workshop 2005)Faceted Navigation (LACASIS Fall Workshop 2005)
Faceted Navigation (LACASIS Fall Workshop 2005)Bradley Allen
 
NIH Data Summit - The NIH Data Commons
NIH Data Summit - The NIH Data CommonsNIH Data Summit - The NIH Data Commons
NIH Data Summit - The NIH Data CommonsVivien Bonazzi
 
Fox-Keynote-Now and Now of Data Publishing-nfdp13
Fox-Keynote-Now and Now of Data Publishing-nfdp13Fox-Keynote-Now and Now of Data Publishing-nfdp13
Fox-Keynote-Now and Now of Data Publishing-nfdp13DataDryad
 
Getting the Most Out of Your E-Resources: Measuring Success
Getting the Most Out of Your E-Resources: Measuring SuccessGetting the Most Out of Your E-Resources: Measuring Success
Getting the Most Out of Your E-Resources: Measuring Successkramsey
 
DIACHRON Project Overview
DIACHRON Project OverviewDIACHRON Project Overview
DIACHRON Project OverviewPRELIDA Project
 

Similar to RDAP 033111 (20)

Bourne RDAP11 Data Publication Repositories
Bourne RDAP11 Data Publication RepositoriesBourne RDAP11 Data Publication Repositories
Bourne RDAP11 Data Publication Repositories
 
Open Data Driven Scholarly Communication in 2020
Open Data Driven Scholarly Communication in 2020Open Data Driven Scholarly Communication in 2020
Open Data Driven Scholarly Communication in 2020
 
Scholarly Communication for Bioinformatics Students
Scholarly Communication for Bioinformatics StudentsScholarly Communication for Bioinformatics Students
Scholarly Communication for Bioinformatics Students
 
Open Access NBIC Workshop April 19, 2011
Open Access NBIC Workshop April 19, 2011Open Access NBIC Workshop April 19, 2011
Open Access NBIC Workshop April 19, 2011
 
Linked Data Generation for the University Data From Legacy Database
Linked Data Generation for the University Data From Legacy Database Linked Data Generation for the University Data From Legacy Database
Linked Data Generation for the University Data From Legacy Database
 
A_Logical_Design_Methodology_for_Relational_Databa.pdf
A_Logical_Design_Methodology_for_Relational_Databa.pdfA_Logical_Design_Methodology_for_Relational_Databa.pdf
A_Logical_Design_Methodology_for_Relational_Databa.pdf
 
The Linked Data Lifecycle
The Linked Data LifecycleThe Linked Data Lifecycle
The Linked Data Lifecycle
 
Cartegena051811
Cartegena051811Cartegena051811
Cartegena051811
 
Cross-Community User Requirements and the Biodiversity Heritage Library
Cross-Community User Requirements and the Biodiversity Heritage LibraryCross-Community User Requirements and the Biodiversity Heritage Library
Cross-Community User Requirements and the Biodiversity Heritage Library
 
Big Data in Biomedicine – An NIH Perspective
Big Data in Biomedicine – An NIH PerspectiveBig Data in Biomedicine – An NIH Perspective
Big Data in Biomedicine – An NIH Perspective
 
Linked Data and Users in Library - Does the library communicate efficiently?
Linked Data and Users in Library - Does the library communicate efficiently?Linked Data and Users in Library - Does the library communicate efficiently?
Linked Data and Users in Library - Does the library communicate efficiently?
 
Sub1579
Sub1579Sub1579
Sub1579
 
The PDB An Exemplar for Data Science To Date, But What About the Future?
The PDB An Exemplar for Data Science To Date, But What About the Future?The PDB An Exemplar for Data Science To Date, But What About the Future?
The PDB An Exemplar for Data Science To Date, But What About the Future?
 
Developing Infrastructure to Support Closer Collaboration of Aggregators with...
Developing Infrastructure to Support Closer Collaboration of Aggregators with...Developing Infrastructure to Support Closer Collaboration of Aggregators with...
Developing Infrastructure to Support Closer Collaboration of Aggregators with...
 
Faceted Navigation (LACASIS Fall Workshop 2005)
Faceted Navigation (LACASIS Fall Workshop 2005)Faceted Navigation (LACASIS Fall Workshop 2005)
Faceted Navigation (LACASIS Fall Workshop 2005)
 
NIH Data Summit - The NIH Data Commons
NIH Data Summit - The NIH Data CommonsNIH Data Summit - The NIH Data Commons
NIH Data Summit - The NIH Data Commons
 
Elsevier1 vc
Elsevier1 vcElsevier1 vc
Elsevier1 vc
 
Fox-Keynote-Now and Now of Data Publishing-nfdp13
Fox-Keynote-Now and Now of Data Publishing-nfdp13Fox-Keynote-Now and Now of Data Publishing-nfdp13
Fox-Keynote-Now and Now of Data Publishing-nfdp13
 
Getting the Most Out of Your E-Resources: Measuring Success
Getting the Most Out of Your E-Resources: Measuring SuccessGetting the Most Out of Your E-Resources: Measuring Success
Getting the Most Out of Your E-Resources: Measuring Success
 
DIACHRON Project Overview
DIACHRON Project OverviewDIACHRON Project Overview
DIACHRON Project Overview
 

More from Philip Bourne

Data Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has ChangedData Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has ChangedPhilip Bourne
 
Data Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has ChangedData Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has ChangedPhilip Bourne
 
AI in Medical Education A Meta View to Start a Conversation
AI in Medical Education A Meta View to Start a ConversationAI in Medical Education A Meta View to Start a Conversation
AI in Medical Education A Meta View to Start a ConversationPhilip Bourne
 
AI+ Now and Then How Did We Get Here And Where Are We Going
AI+ Now and Then How Did We Get Here And Where Are We GoingAI+ Now and Then How Did We Get Here And Where Are We Going
AI+ Now and Then How Did We Get Here And Where Are We GoingPhilip Bourne
 
Thoughts on Biological Data Sustainability
Thoughts on Biological Data SustainabilityThoughts on Biological Data Sustainability
Thoughts on Biological Data SustainabilityPhilip Bourne
 
What is FAIR Data and Who Needs It?
What is FAIR Data and Who Needs It?What is FAIR Data and Who Needs It?
What is FAIR Data and Who Needs It?Philip Bourne
 
Data Science Meets Biomedicine, Does Anything Change
Data Science Meets Biomedicine, Does Anything ChangeData Science Meets Biomedicine, Does Anything Change
Data Science Meets Biomedicine, Does Anything ChangePhilip Bourne
 
Data Science Meets Drug Discovery
Data Science Meets Drug DiscoveryData Science Meets Drug Discovery
Data Science Meets Drug DiscoveryPhilip Bourne
 
Biomedical Data Science: We Are Not Alone
Biomedical Data Science: We Are Not AloneBiomedical Data Science: We Are Not Alone
Biomedical Data Science: We Are Not AlonePhilip Bourne
 
BIMS7100-2023. Social Responsibility in Research
BIMS7100-2023. Social Responsibility in ResearchBIMS7100-2023. Social Responsibility in Research
BIMS7100-2023. Social Responsibility in ResearchPhilip Bourne
 
AI from the Perspective of a School of Data Science
AI from the Perspective of a School of Data ScienceAI from the Perspective of a School of Data Science
AI from the Perspective of a School of Data SciencePhilip Bourne
 
What Data Science Will Mean to You - One Person's View
What Data Science Will Mean to You - One Person's ViewWhat Data Science Will Mean to You - One Person's View
What Data Science Will Mean to You - One Person's ViewPhilip Bourne
 
Novo Nordisk 080522.pptx
Novo Nordisk 080522.pptxNovo Nordisk 080522.pptx
Novo Nordisk 080522.pptxPhilip Bourne
 
Towards a US Open research Commons (ORC)
Towards a US Open research Commons (ORC)Towards a US Open research Commons (ORC)
Towards a US Open research Commons (ORC)Philip Bourne
 
COVID and Precision Education
COVID and Precision EducationCOVID and Precision Education
COVID and Precision EducationPhilip Bourne
 
One View of Data Science
One View of Data ScienceOne View of Data Science
One View of Data SciencePhilip Bourne
 
Cancer Research Meets Data Science — What Can We Do Together?
Cancer Research Meets Data Science — What Can We Do Together?Cancer Research Meets Data Science — What Can We Do Together?
Cancer Research Meets Data Science — What Can We Do Together?Philip Bourne
 
Data Science Meets Open Scholarship – What Comes Next?
Data Science Meets Open Scholarship – What Comes Next?Data Science Meets Open Scholarship – What Comes Next?
Data Science Meets Open Scholarship – What Comes Next?Philip Bourne
 
Data to Advance Sustainability
Data to Advance SustainabilityData to Advance Sustainability
Data to Advance SustainabilityPhilip Bourne
 
Frontiers of Computing at the Cellular and Molecular Scales
Frontiers of Computing at the Cellular and Molecular ScalesFrontiers of Computing at the Cellular and Molecular Scales
Frontiers of Computing at the Cellular and Molecular ScalesPhilip Bourne
 

More from Philip Bourne (20)

Data Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has ChangedData Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has Changed
 
Data Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has ChangedData Science and AI in Biomedicine: The World has Changed
Data Science and AI in Biomedicine: The World has Changed
 
AI in Medical Education A Meta View to Start a Conversation
AI in Medical Education A Meta View to Start a ConversationAI in Medical Education A Meta View to Start a Conversation
AI in Medical Education A Meta View to Start a Conversation
 
AI+ Now and Then How Did We Get Here And Where Are We Going
AI+ Now and Then How Did We Get Here And Where Are We GoingAI+ Now and Then How Did We Get Here And Where Are We Going
AI+ Now and Then How Did We Get Here And Where Are We Going
 
Thoughts on Biological Data Sustainability
Thoughts on Biological Data SustainabilityThoughts on Biological Data Sustainability
Thoughts on Biological Data Sustainability
 
What is FAIR Data and Who Needs It?
What is FAIR Data and Who Needs It?What is FAIR Data and Who Needs It?
What is FAIR Data and Who Needs It?
 
Data Science Meets Biomedicine, Does Anything Change
Data Science Meets Biomedicine, Does Anything ChangeData Science Meets Biomedicine, Does Anything Change
Data Science Meets Biomedicine, Does Anything Change
 
Data Science Meets Drug Discovery
Data Science Meets Drug DiscoveryData Science Meets Drug Discovery
Data Science Meets Drug Discovery
 
Biomedical Data Science: We Are Not Alone
Biomedical Data Science: We Are Not AloneBiomedical Data Science: We Are Not Alone
Biomedical Data Science: We Are Not Alone
 
BIMS7100-2023. Social Responsibility in Research
BIMS7100-2023. Social Responsibility in ResearchBIMS7100-2023. Social Responsibility in Research
BIMS7100-2023. Social Responsibility in Research
 
AI from the Perspective of a School of Data Science
AI from the Perspective of a School of Data ScienceAI from the Perspective of a School of Data Science
AI from the Perspective of a School of Data Science
 
What Data Science Will Mean to You - One Person's View
What Data Science Will Mean to You - One Person's ViewWhat Data Science Will Mean to You - One Person's View
What Data Science Will Mean to You - One Person's View
 
Novo Nordisk 080522.pptx
Novo Nordisk 080522.pptxNovo Nordisk 080522.pptx
Novo Nordisk 080522.pptx
 
Towards a US Open research Commons (ORC)
Towards a US Open research Commons (ORC)Towards a US Open research Commons (ORC)
Towards a US Open research Commons (ORC)
 
COVID and Precision Education
COVID and Precision EducationCOVID and Precision Education
COVID and Precision Education
 
One View of Data Science
One View of Data ScienceOne View of Data Science
One View of Data Science
 
Cancer Research Meets Data Science — What Can We Do Together?
Cancer Research Meets Data Science — What Can We Do Together?Cancer Research Meets Data Science — What Can We Do Together?
Cancer Research Meets Data Science — What Can We Do Together?
 
Data Science Meets Open Scholarship – What Comes Next?
Data Science Meets Open Scholarship – What Comes Next?Data Science Meets Open Scholarship – What Comes Next?
Data Science Meets Open Scholarship – What Comes Next?
 
Data to Advance Sustainability
Data to Advance SustainabilityData to Advance Sustainability
Data to Advance Sustainability
 
Frontiers of Computing at the Cellular and Molecular Scales
Frontiers of Computing at the Cellular and Molecular ScalesFrontiers of Computing at the Cellular and Molecular Scales
Frontiers of Computing at the Cellular and Molecular Scales
 

Recently uploaded

Mastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory InspectionMastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory InspectionSafetyChain Software
 
Student login on Anyboli platform.helpin
Student login on Anyboli platform.helpinStudent login on Anyboli platform.helpin
Student login on Anyboli platform.helpinRaunakKeshri1
 
CARE OF CHILD IN INCUBATOR..........pptx
CARE OF CHILD IN INCUBATOR..........pptxCARE OF CHILD IN INCUBATOR..........pptx
CARE OF CHILD IN INCUBATOR..........pptxGaneshChakor2
 
The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13Steve Thomason
 
Sanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdfSanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdfsanyamsingh5019
 
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...fonyou31
 
1029-Danh muc Sach Giao Khoa khoi 6.pdf
1029-Danh muc Sach Giao Khoa khoi 6.pdf1029-Danh muc Sach Giao Khoa khoi 6.pdf
1029-Danh muc Sach Giao Khoa khoi 6.pdfQucHHunhnh
 
9548086042 for call girls in Indira Nagar with room service
9548086042 for call girls in Indira Nagar with room service9548086042 for call girls in Indira Nagar with room service
9548086042 for call girls in Indira Nagar with room servicediscovermytutordmt
 
Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptxOrganic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptxVS Mahajan Coaching Centre
 
Z Score,T Score, Percential Rank and Box Plot Graph
Z Score,T Score, Percential Rank and Box Plot GraphZ Score,T Score, Percential Rank and Box Plot Graph
Z Score,T Score, Percential Rank and Box Plot GraphThiyagu K
 
mini mental status format.docx
mini mental status format.docxmini mental status format.docx
mini mental status format.docxPoojaSen20
 
A Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy ReformA Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy ReformChameera Dedduwage
 
Grant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy ConsultingGrant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy ConsultingTechSoup
 
JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...
JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...
JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...anjaliyadav012327
 
Accessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impactAccessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impactdawncurless
 
The basics of sentences session 2pptx copy.pptx
The basics of sentences session 2pptx copy.pptxThe basics of sentences session 2pptx copy.pptx
The basics of sentences session 2pptx copy.pptxheathfieldcps1
 
Arihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdfArihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdfchloefrazer622
 
Disha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdfDisha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdfchloefrazer622
 

Recently uploaded (20)

Mastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory InspectionMastering the Unannounced Regulatory Inspection
Mastering the Unannounced Regulatory Inspection
 
Student login on Anyboli platform.helpin
Student login on Anyboli platform.helpinStudent login on Anyboli platform.helpin
Student login on Anyboli platform.helpin
 
CARE OF CHILD IN INCUBATOR..........pptx
CARE OF CHILD IN INCUBATOR..........pptxCARE OF CHILD IN INCUBATOR..........pptx
CARE OF CHILD IN INCUBATOR..........pptx
 
The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13The Most Excellent Way | 1 Corinthians 13
The Most Excellent Way | 1 Corinthians 13
 
Sanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdfSanyam Choudhary Chemistry practical.pdf
Sanyam Choudhary Chemistry practical.pdf
 
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
Ecosystem Interactions Class Discussion Presentation in Blue Green Lined Styl...
 
Advance Mobile Application Development class 07
Advance Mobile Application Development class 07Advance Mobile Application Development class 07
Advance Mobile Application Development class 07
 
1029-Danh muc Sach Giao Khoa khoi 6.pdf
1029-Danh muc Sach Giao Khoa khoi 6.pdf1029-Danh muc Sach Giao Khoa khoi 6.pdf
1029-Danh muc Sach Giao Khoa khoi 6.pdf
 
9548086042 for call girls in Indira Nagar with room service
9548086042 for call girls in Indira Nagar with room service9548086042 for call girls in Indira Nagar with room service
9548086042 for call girls in Indira Nagar with room service
 
Código Creativo y Arte de Software | Unidad 1
Código Creativo y Arte de Software | Unidad 1Código Creativo y Arte de Software | Unidad 1
Código Creativo y Arte de Software | Unidad 1
 
Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptxOrganic Name Reactions for the students and aspirants of Chemistry12th.pptx
Organic Name Reactions for the students and aspirants of Chemistry12th.pptx
 
Z Score,T Score, Percential Rank and Box Plot Graph
Z Score,T Score, Percential Rank and Box Plot GraphZ Score,T Score, Percential Rank and Box Plot Graph
Z Score,T Score, Percential Rank and Box Plot Graph
 
mini mental status format.docx
mini mental status format.docxmini mental status format.docx
mini mental status format.docx
 
A Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy ReformA Critique of the Proposed National Education Policy Reform
A Critique of the Proposed National Education Policy Reform
 
Grant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy ConsultingGrant Readiness 101 TechSoup and Remy Consulting
Grant Readiness 101 TechSoup and Remy Consulting
 
JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...
JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...
JAPAN: ORGANISATION OF PMDA, PHARMACEUTICAL LAWS & REGULATIONS, TYPES OF REGI...
 
Accessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impactAccessible design: Minimum effort, maximum impact
Accessible design: Minimum effort, maximum impact
 
The basics of sentences session 2pptx copy.pptx
The basics of sentences session 2pptx copy.pptxThe basics of sentences session 2pptx copy.pptx
The basics of sentences session 2pptx copy.pptx
 
Arihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdfArihant handbook biology for class 11 .pdf
Arihant handbook biology for class 11 .pdf
 
Disha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdfDisha NEET Physics Guide for classes 11 and 12.pdf
Disha NEET Physics Guide for classes 11 and 12.pdf
 

RDAP 033111

  • 1. A Few RDAP Thoughts Based on Experience with The RCSB Protein Data Bank www.rcsb.org Philip E. Bourne UCSD [email_address] 3/31/11 RDAP Summit 2011
  • 2.
  • 3.
  • 4. PDB Total Contents by Year Number of released entries Year 3/31/11
  • 5.
  • 6. Metric of Success - A Research Tool for Influenza * http://www.cdc.gov/h1n1flu/estimates/April_March_13.htm Structure Summary page activity for H1N1 Influenza related structures * 3B7E: Neuraminidase of A/Brevig Mission/1/1918 H1N1 strain in complex with zanamivir Jan. 2008 Jan. 2009 Jan. 2010 Jul. 2009 Jul. 2008 Jul. 2010 1RUZ: 1918 H1 Hemagglutinin
  • 7.
  • 8.
  • 9.
  • 10.
  • 11.
  • 12.
  • 13. Example of Interoperability: The Database View www.rcsb.org/pdb/explore/literature.do?structureId=1TIM BMC Bioinformatics 2010 11:220
  • 14. Example of Interoperability – The Literature View From Anita de Waard, Elsevier
  • 15. Semantic Tagging & Widgets are a Powerful Tool to Integrate Data and Knowledge of that Data, But as Yet Not Used Much Will Widgets and Semantic Tagging Change Computational Biology? PLoS Comp. Biol. 6(2) e1000673
  • 16. Semantic Tagging of Database Content in The Literature or Elsewhere http://www.rcsb.org/pdb/static.do?p=widgets/widgetShowcase.jsp PLoS Comp. Biol. 6(2) e1000673 Semantic Tagging
  • 17.
  • 18.
  • 19.
  • 20. Acknowledgements Funding Agencies: NSF, NIGMS, DOE, NLM, NCI, NCRR, NIBIB, NINDS, NIDDK 3/31/11 RDAP Summit 2011