SlideShare una empresa de Scribd logo
1 de 20
Open Drug
Discovery Teams
    (ODDT)
  http://slidesha.re/xzGhFH
A New Challenge
  Mid January Pistoia Alliance ask for volunteers
   to present in a Dragon’s Den scenario Feb 8th at
   the RSC
 Ideas that will transform Pharma R&D in 2014

 So my natural response was :

“If I am going to take part I want to create
   something real”

    http://bit.ly/wImJtH
http://pistoiaalliance.org/
Could an app transform R&D ?
   Tuberculosis Kills 1.6-1.7m/yr (~1 every 8 seconds) equivalent to malaria
   No new drugs in over 40 yrs
   Pipeline is thin and weak BMGF & NIH do not coordinate TB efforts, not
    mandating open data.

   > 7000 rare diseases
   e.g. Jill Wood started a foundation, raises money, awareness, funds
    ground breaking research happening globally.

   She is in a race against time – what can we do to translate ideas from
    bench to patient faster?

   How can we help parents and families ?
Inspiration
   There are many 1000s of diseases
     and few with cures

   Science Online 2012 on open notebooks and data
    overload

   Flipboard

  Could we create an app
for science like Flipboard?
http://slidesha.re/why7gg
Within about 10 days Alex Clark Created
     ODDT to present at the Pistoia meeting




Focused on Tuberculosis, Malaria, HIV/AIDS, Huntington’s Disease,
Sanfilippo Syndrome, and Green Chemistry as topics in version 1

We did not win the competition but had useful feedback – the need to
articulate the value proposition
                               http://slidesha.re/GzVSPr
The Value Proposition
   The project is intended to bring together open data in a single aggregated
    collection, and then facilitate forming open research teams around this data

   Disseminate important information to a highly relevant target audience

   Network and discover other researchers with complementary interests, and
    opportunities to collaborate

   Team members will be able to borrow and reuse a growing collection of
    existing Open data.
   The community as a whole can debate, contest or endorse data based on
    its quality.

   The app could also be used as a type of “lab notebook” whereby individual
    researchers share links (URLs) to content and the app aggregates these.


                          http://slidesha.re/weDFLg
Latest Layout
9 Panels includes one
on ODDT information




Can use multiple
Twitter accounts
Here is my icon


 Stats summary

  About App
Tap on a panel and look at
   Incoming contents
                        Click here to
                        endorse or
                        disapprove

                        Click here to
                        follow hyperlink




                        Incoming is
                        sorted by time
                        of creation
Browse through multiple pages of
            tweets
Endorse, Disapprove and
      Comment
Recent contents


                  Click on image to
                  open it




                  Recent is
                  factoids with
                  a vote count
                  of +1 or
                  better
Content   Click on image to
          open it

          Ranked content




          Content is
          currently
          anything with
          a vote
          count of +1 or
          better, sorted
          by most
          popular first
Tap on a link or image
Be able to download
      content
Look at your own statistics
Exposing rare diseases – creating
communities of researchers and sparking
              discussion




                                My tweets on
                                recent analyses
                                and ideas



                                  My Retweets
Coming Soon
   From idea to appstore in ~2 months
   Available on appstore since April 12
   Future versions will allow user to specify topics
   Presented at ACS
   Submitted business plan to ACS GCI
       Rewards – badges
       Beta version
       More ideas that may need funding to cover server
        etc
       - Would you fund us if we posted ODDT on
        Kickstarter or Petridish.org or IndieGoGo??
       Are there sponsors for specific pages or content?
Thank you Alpha
          testers
      Antony J. Williams
      Hans De Winter
      Chris Swain
      Andrew Lang
      Carlo Yuvienco
      Paul Reinheimer
      Michael S. Lajiness
      Nancy Connell
      Greta Beekhuis
      Joe Hupcey III
      Freundlich, Joel
      Tanya Parrish
      Peter Olinga


                                          ODDT
      Peter Caduff
Photo for San Fillipo Syndrome courtesy
of Jill Wood www.jonahsjustbegun.org
More Information
   Please contact us for further details or suggestions at:
    aclark@molmatinf.com and ekinssean@yahoo.com

   You can learn more about the ODDT app at:
     http://www.scimobileapps.com/index.php?
    title=Open_Drug_Discovery_Teams

And frequent blogs at http://www.collabchem.com and
  http://cheminf20.org/

User guide now available at SlideShare http://slidesha.re/JcDTOs
and FigShare http://bit.ly/IjR52V

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Open Drug Discovery Teams

  • 1. Open Drug Discovery Teams (ODDT) http://slidesha.re/xzGhFH
  • 2. A New Challenge  Mid January Pistoia Alliance ask for volunteers to present in a Dragon’s Den scenario Feb 8th at the RSC  Ideas that will transform Pharma R&D in 2014  So my natural response was : “If I am going to take part I want to create something real” http://bit.ly/wImJtH http://pistoiaalliance.org/
  • 3. Could an app transform R&D ?  Tuberculosis Kills 1.6-1.7m/yr (~1 every 8 seconds) equivalent to malaria  No new drugs in over 40 yrs  Pipeline is thin and weak BMGF & NIH do not coordinate TB efforts, not mandating open data.  > 7000 rare diseases  e.g. Jill Wood started a foundation, raises money, awareness, funds ground breaking research happening globally.  She is in a race against time – what can we do to translate ideas from bench to patient faster?  How can we help parents and families ?
  • 4. Inspiration  There are many 1000s of diseases and few with cures  Science Online 2012 on open notebooks and data overload  Flipboard  Could we create an app for science like Flipboard?
  • 6. Within about 10 days Alex Clark Created ODDT to present at the Pistoia meeting Focused on Tuberculosis, Malaria, HIV/AIDS, Huntington’s Disease, Sanfilippo Syndrome, and Green Chemistry as topics in version 1 We did not win the competition but had useful feedback – the need to articulate the value proposition http://slidesha.re/GzVSPr
  • 7. The Value Proposition  The project is intended to bring together open data in a single aggregated collection, and then facilitate forming open research teams around this data  Disseminate important information to a highly relevant target audience  Network and discover other researchers with complementary interests, and opportunities to collaborate  Team members will be able to borrow and reuse a growing collection of existing Open data.  The community as a whole can debate, contest or endorse data based on its quality.  The app could also be used as a type of “lab notebook” whereby individual researchers share links (URLs) to content and the app aggregates these. http://slidesha.re/weDFLg
  • 8. Latest Layout 9 Panels includes one on ODDT information Can use multiple Twitter accounts Here is my icon Stats summary About App
  • 9. Tap on a panel and look at Incoming contents Click here to endorse or disapprove Click here to follow hyperlink Incoming is sorted by time of creation
  • 10. Browse through multiple pages of tweets
  • 12. Recent contents Click on image to open it Recent is factoids with a vote count of +1 or better
  • 13. Content Click on image to open it Ranked content Content is currently anything with a vote count of +1 or better, sorted by most popular first
  • 14. Tap on a link or image
  • 15. Be able to download content
  • 16. Look at your own statistics
  • 17. Exposing rare diseases – creating communities of researchers and sparking discussion My tweets on recent analyses and ideas My Retweets
  • 18. Coming Soon  From idea to appstore in ~2 months  Available on appstore since April 12  Future versions will allow user to specify topics  Presented at ACS  Submitted business plan to ACS GCI  Rewards – badges  Beta version  More ideas that may need funding to cover server etc  - Would you fund us if we posted ODDT on Kickstarter or Petridish.org or IndieGoGo??  Are there sponsors for specific pages or content?
  • 19. Thank you Alpha testers  Antony J. Williams  Hans De Winter  Chris Swain  Andrew Lang  Carlo Yuvienco  Paul Reinheimer  Michael S. Lajiness  Nancy Connell  Greta Beekhuis  Joe Hupcey III  Freundlich, Joel  Tanya Parrish  Peter Olinga ODDT  Peter Caduff Photo for San Fillipo Syndrome courtesy of Jill Wood www.jonahsjustbegun.org
  • 20. More Information  Please contact us for further details or suggestions at: aclark@molmatinf.com and ekinssean@yahoo.com  You can learn more about the ODDT app at: http://www.scimobileapps.com/index.php? title=Open_Drug_Discovery_Teams And frequent blogs at http://www.collabchem.com and http://cheminf20.org/ User guide now available at SlideShare http://slidesha.re/JcDTOs and FigShare http://bit.ly/IjR52V