The primary structure of a protein is its amino acid sequence. It has an N-terminal end with a free NH3+ group and a C-terminal end with a free COO- group. The secondary structure involves hydrogen bonding between amino acids and forms alpha helices, beta pleated sheets, or triple helices. The tertiary structure is the overall 3D shape from interactions between amino acid side chains far apart in the sequence. Quaternary structure refers to the association of multiple polypeptide chains in an oligomeric protein.