ANTABIF at the BELSPO-SOA event

1. ANTABIF: Bruno Danis - SOA-BELSPO event Antarctic Biodiversity Information Facility

2. Antarctic Treaty « In order to promote international cooperation in scientiﬁc investigation in Antarctica, […], Scientiﬁc observations and results from Antarctica shall be exchanged and made freely available. »

3. Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe.

4. Antarctic Information Networks - scope David B, Danis B, Grifﬁths HJ

5. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component David B, Danis B, Grifﬁths HJ

6. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data David B, Danis B, Grifﬁths HJ

7. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects David B, Danis B, Grifﬁths HJ

8. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management David B, Danis B, Grifﬁths HJ

9. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management • Networked community developments David B, Danis B, Grifﬁths HJ

10. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management • Networked community developments • Scientiﬁc impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Grifﬁths HJ

11. Antarctic Information Networks - scope • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management • Networked community developments • Scientiﬁc impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Grifﬁths HJ

12. Collaboration cloud - who’s in?

15. Taxonomy 17,098 taxa The ﬁrst dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life

16. Taxonomy 17,098 taxa The ﬁrst dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life

17. Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open

18. Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open

19. Antarctic Information Networks - applications

20. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation

21. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design

22. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns

23. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns • Antarctic Field Guides

24. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns • Antarctic Field Guides • Biogeographic Atlas

25. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns • Antarctic Field Guides • Biogeographic Atlas • Gap analysis

26. Antarctic Information Networks - applications • Data-driven Marine Protected Area designation • Expedition design • Biogeographic patterns • Antarctic Field Guides • Biogeographic Atlas • Gap analysis • more...

27. Functionalities

28. biodiversity.aq

29. biodiversity.aq • www.biodiversity.aq

30. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq

31. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq

32. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq

33. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq

34. biodiversity.aq • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq

35. biodiversity.aq Promote)the)communit • www.biodiversity.aq MODULAR development)of)N ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF

36. biodiversity.aq Nodes)Investment)in)new)func@onality) Promote)the)communit • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF

37. biodiversity.aq Nodes)Investment)in)new)func@onality) Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF

38. biodiversity.aq Nodes)Investment)in)new)func@onality) NPT)can)be)extended)by)crea@ng)an Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq installing)Modules) MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery Data products A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF

39. www.biodiversity.aq • general website • latest news • contact • sponsors • governance • resources • projects

40. www.biodiversity.aq -resources- redo these slides with new structure of webportal (projects vs resources)

41. www.biodiversity.aq -mendeley-

42. www.biodiversity.aq -pictures-

43. www.biodiversity.aq -projects-

44. share.biodiversity.aq -shared repository-

45. data.biodiversity.aq • data discovery interface • visualize occurrence data on map • view taxonomic data • download data • view metrics • send feedback • access technical documentation

46. Under the hood • Language: Ruby • Framework: Rails(ActiveRecord) and YUI • (smart) Search engine: Full text (ElasticSearch-Lucene) • Database/GIS server/SpatialDB: PostGresql/ Geoserver/PostGIS • Mapping client: OpenLayers • Web services: RESTish (all resources) • Protocols/Standards: DIF, DwC, DwC-A, Tapir…etc • GBIF tools : HIT, IPT • Hosting: BeBIF (ULB/VUB joint IT Center) • Metadata systems: GCMD API (DIF), EML

47. Under the hood

48. Under the hood SPATIALLY EXPLICIT

49. Under the hood SPATIALLY EXPLICIT OPEN SOURCE

50. Under the hood SPATIALLY EXPLICIT OPEN SOURCE FLEXIBLE

51. Under the hood SPATIALLY EXPLICIT OPEN SOURCE FLEXIBLE INTEROPERABLE

52. Under the hood SPATIALLY EXPLICIT OPEN SOURCE FLEXIBLE INTEROPERABLE EXPANDABLE

53. Under the hood SPATIALLY EXPLICIT OPEN SOURCE FLEXIBLE INTEROPERABLE EXPANDABLE MULTI-STANDARDS

54. data. biodiversity.aq

64. ipt.biodiversity.aq • Integrated Publishing Toolkit • standardize and clean your data • manage primary biodiversity data • manage associated metadata • choose collaborators • generate and submit a Data Paper • push data and metadata to Information Systems

65. ipt. biodiversity.aq

70. Reward data publishing Metadata document Data Paper

71. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan | Received 13 March 2012 | Accepted 18 April 2012 | Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS systems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

74. afg. biodiversity.aq • Identiﬁcation aid • High quality (useful) pictures • Expert Descriptions • Built on-the-ﬂy from various sources • Generates a pdf for taxa/area of interest

75. afg. biodiversity.aq

78. atlas.biodiversity.aq

79. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean

80. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio

81. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach

82. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions

83. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are ready

84. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records

87. R-functions GUI for BRT

88. R-functions GUI for BRT

90. mars.biodiversity.aq

91. mars.biodiversity.aq • Microbial Antarctic Resource System

92. mars.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems

93. mars.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems • They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continent

94. mars.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems • They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continent • Access to their diversity is becoming cost-effective and increasing exponentially

96. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF

97. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach:

98. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery

99. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata

100. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data

101. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing

102. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing Step 4: customized sequence data processing

104. mars.biodiversity.aq • Potential applications:

105. mars.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes?

106. mars.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activities

107. mars.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activities Assess bioindicating value of microbial diversity as early warning system of ecosystems shifts

108. Challenges

109. Challenges

110. Challenges • Data deluge

111. Challenges • Data deluge • Huge gaps in the data

112. Challenges • Data deluge • Huge gaps in the data • Missing data types

113. Challenges • Data deluge • Huge gaps in the data • Missing data types • Orphan datasets

114. Challenges • Data deluge • Huge gaps in the data • Missing data types • Orphan datasets • True integration of complex data

ANTABIF at the BELSPO-SOA event

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