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Genetic and Molecular Characterization of a Dental Pathogen Using a Genome-Wide Approach
The Human Oral Cavity ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The Microbial Oral Community A. H.  Rickard  et al ., Trends Microbiol. 2003
The Microbial Oral Community A. H.  Rickard  et al ., Trends Microbiol. 2003
Microbial Genome Sequencing Projects NIDCR Initial Recommendation
Microbial Genome Sequencing Projects Supported by NIDCR
Los Alamos National Laboratory  The Oral Pathogen Sequence Databases
Status of Oral Pathogen Genomes Data obtained from: † , Genomes OnLine Databases (GOLD) *, TIGR Databases * †
Actinobacillus actinomycetemcomitans  ( A.a. ) ,[object Object],[object Object],[object Object],[object Object],[object Object]
Facts About Iron
Facts About Iron
Siderophore-dependent Main Bacterial Iron Acquisition Systems
Siderophore-dependent Siderophore-independent Main Bacterial Iron Acquisition Systems
Gene  Regulation  by Fur and sRNA
Gene  Regulation  by Fur and sRNA
Iron Acquisition by  A.a.   from Lactoferrin and Transferrin ,[object Object],[object Object],[object Object],[object Object],[object Object]
Iron Acquisition  A.a.   from Heme, Hemoglobin, and Hemophores   ,[object Object],[object Object],[object Object],[object Object]
Ligand-Independent Iron Acquisition by  A.a.   Afu   system Afe  system ,[object Object],[object Object],[object Object],Afu   system Afe  system
Comparative Analysis of  A.a.  Strains by PCR and DNA Sequencing + ND ND + hgpA + + + + tonB + + + + fur + + + + afeD + + + + afeC + + + + afeB CU1000 SUNY465 Y4 HK1651 + + + + afeA + + + + afuC + + + + afuB + + + + afuA
Iron Acquisition from Different Sources by CU1000(rough) and CU1060 (smooth) + + Utilization of FeCl 3 + +++ Binding of heme + + Utilization of heme ND ND Binding of hHb - - Utilization of hHb CU1060 CU1000 + + + Binding of hLf - - Utilization of hLf - - Binding of hTf - - Utilization of hTf
Gene Regulation by Fur Expression of Fur Expression of iron-regulated proteins
Cloning of Fur-Regulated Genes with Fur Titration Assays - FURTA ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Identification of Some Potential HK1651 Fur-Regulated Genes ,[object Object],[object Object],[object Object]
Identification of Some Potential HK1651 Fur-Regulated Genes ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Identification of Some Potential HK1651 Fur-Regulated Genes ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Identification of Some Potential HK1651 Fur-Regulated Genes ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Questions to Answer/Future Plans ,[object Object],[object Object],[object Object]
Questions to Answer/Future Plans ,[object Object],[object Object],[object Object],[object Object],Ajdic  et al.,  2002
Reconstruction of  S. mutans   metabolic pathways and transport systems
[object Object],[object Object],[object Object],Questions to Answer/Future Plans
[object Object],[object Object],[object Object],[object Object],Questions to Answer/Future Plans Genome-wide transcriptional analysis with DNA microarrays
Analysis of the  P. aeruginosa  Iron Regulon Analysis of gene expression in cells cultured under iron-rich and iron-limiting conditions using GeneChip ®  arrays
Analysis of the  P. aeruginosa  Iron Regulon Analysis of gene expression in cells cultured under iron-rich and iron-limiting conditions using GeneChip ®  arrays U. A. Ochsner  et al ., 2002
Analysis of the  P. aeruginosa  Fur Regulon ,[object Object],[object Object],[object Object]
Analysis of the  P. aeruginosa  Fur Regulon ,[object Object],[object Object],[object Object],Computer screening of IGRs IGR4704-4705 P. J. Wilderman  et al ., 2003
Analysis of the  P. aeruginosa  IRG4704-4705 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],P. J. Wilderman  et al ., 2003
Where are we with  A.a. ? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],D. Dyer, OUHSC
Where are we with  A.a. ? ,[object Object],D. Dyer, OUHSC
Where are we with  A.a. ? ,[object Object],[object Object],[object Object],D. Fine & D. Figurski Labs
Where are we with  A.a. ? ,[object Object],[object Object],[object Object],[object Object],[object Object],D. Fine & D. Figurski Labs
Where are we with  A.a. ? ,[object Object],[object Object],[object Object],[object Object],[object Object],D. Fine & D. Figurski Labs
What are some of next/future the steps? ,[object Object],[object Object],[object Object],[object Object],[object Object]
What are some of next/future the steps? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
What are some of next/future the steps? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 

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Genetic and Molecular Characterization of a Dental Pathogen Using a Genome-Wide Approach