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Open Science One Person’s View and What We Are Doing About It Philip E. Bourne University of California San Diego [email_address] edu PSB Open Science Workshop 2009
So Why am I Here? ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Agenda ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Agenda ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Today’s Research Contract Research [Grants] Journal Article Conference Paper Poster Session Feds Societies Publishers Reviews Blogs Community Service/Data
Tomorrows Research Contract ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Tomorrows Research Contract: Evidence ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Agenda ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
The Vision… ,[object Object],PSB Open Science Workshop 2009
What is Missing to Make the Vision a Reality? ,[object Object],[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
What are the Catalysts for Change? ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Where are we Today? ,[object Object],[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Catalyst for Change: Open Access (Creative Commons License)  ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Catalyst for Change: Open Access (Creative Commons License)  ,[object Object],[object Object],[object Object],The catalyst PLoS Comp Biol  2008  4(3)  e1000037 PSB Open Science Workshop 2009
Community Reaction? Most scientists have no idea that this implies that anyone can take their material and enhance it e.g., via mashup and effectively republish it PSB Open Science Workshop 2009
Agenda ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Database and Journal Integration- The Test Bed http://www.pdb.org/ Journals Database http://www.pubmedcentral.nih.gov PSB Open Science Workshop 2009
BioLit:  Tools for New Modes of Scientific Dissemination ,[object Object],[object Object],[object Object],[object Object],1. A link brings up figures  from the paper 0. Full text of PLoS papers stored  in a database 2. Clicking the paper figure retrieves data from the PDB which is analyzed 3. A composite view of journal and database content results 4. The composite view has links to pertinent blocks  of literature text and back to the PDB 1. 2. 3. 4. The Knowledge and Data Cycle http://biolit.ucsd.edu
http://biolit.ucsd.edu Nucleic Acids Research  2008 36(S2) W385-389   PSP Washington DC Feb. 2008
PSB Open Science Workshop 2009
PSB Open Science Workshop 2009
ICTP Trieste, December 10, 2007
Data Clustering via the Literature PSB Open Science Workshop 2009 Immunology Literature Cardiac Disease Literature
Semantic Richness Should be at the Point of Authoring - BioLit Plugin Project Author  Paper  Word File in Docx format Publisher
Plugin Architecture
Notion of traditional publications being associated with podcasts and video www.scivee.tv
Pubcast – Video Integrated with the Full Text of the Paper
Professional Profile ICTP Trieste, December 2007
SciVee – Viral Projects ,[object Object],[object Object],[object Object],[object Object]
Postercasts PSB Open Science Workshop 2009
Summary ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009
Acknowledgements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],CT Watch 2007 , 3(3) 26-31 PSB Open Science Workshop 2009
Questions? [email_address] PSB Open Science Workshop 2009

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Phil Bourne - One man's perspective on Open Science