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KNOWLEDGE ENGINEERING OF
        HEALTHCARE APPLICATIONS
            BASED ON MINIMALIST
              MULTILEVEL MODELS

      EXPANDING THE SCOPE OF EHEALTH:
   FROM ELECTRONIC HEALTH RECORDS TO
             BIOMEDICAL APPLICATIONS

Luciana Tricai Cavalini                       Timothy Wayne Cook
Department of Health Information Technology   MLHIM Associated Laboratory
Medical Sciences College                      National Institute of Science and Technology –
Rio de Janeiro State University               Medicine Assisted by Scientific Computing
DYNAMICS AND COMPLEXIT Y IN
        HEALTHCARE


                                   Time

        Healthcare systems are
Space     much more complex
        than any other sector of
                human
          society, regarding 3
              dimensions:


                                          Ontology
WHY HEALTHCARE IS SO COMPLEX?

 Healthcare is the only economic sector that deals with
  biological production processes (which are created by nature)
 All other economic sectors deal with industrial production
  processes (which are created by the man)
 Production processes that are created by the man are much
  simpler than the biological processes, because:

  Civilization starts just dozens of                 Evolution had millions of years to
       thousands of years ago                            reach to that complexity


                                                  Biological systems are as complex as
 Industrial systems are as simple as
                                                   necessary to guarantee the survival
     possible to maximize profit
                                                              of the species

                See Dawkins R. The greatest show on earth, pp. 204-5, and Marx K. Complete works.
THE ONTOLOGICAL COMPLEXIT Y


                                                              In practical terms;
                                                                   building a
The greatest medical                Thus, in
                                                             “megalithic system”
     terminology              medicine, there are
                                                              that all healthcare
  (SNOMED-CT) has               roughly 310,000
                                                              settings could use
 more than 310,000            concepts, connected
                                                                would require a
terms, connected by             to each other by
                                                               great amount of
      more than               millions of different
                                                            tables with 310,000
   1,000,000 links                    ways
                                                            fields and millions of
                                                                 relationships




      Cavalini-Cook Conjecture: The probability of consensus between 2 or
        more experts from the same field regarding which would be the
     “maximum data model” for any given healthcare concept tends to zero
THE CONSEQUENCES OF HEALTHCARE
             COMPLEXIT Y (1)

This complexity turns a computer science problem that does not exist (or at least it is not
critical) in any other sector of human society into a very important issue in healthcare.

This problem is:
Chest X-Ray:
- Nodule in
  right apex
-   Cough
-   For 3 months   -   Cough
-   Low fever      -   For 3 months
BAL:               -   Low fever
- TB               Chest X-Ray:
                   - Nodule in
                     right apex


BAL:
- TB
Chest X-Ray:
- Nodule in
  right apex
-   Cough
-   For 3 months
-   Low fever
A UNDERESTIMATED PROBLEM

 Semantic interoperability in healthcare is not perceived as a
problem by the vast majority of health informaticians because:


   Apparently, it only
                                                     Academic projects
   concerns national
                              Most software         are usually focused
 governments, and no
                             companies are            on a very specific
country nowadays has
                           satisfied with their   subject, and recording
       the required
                          customer portfolio or    their data in isolated
     combination of
                           still dream the old     silos is not seen as a
         technical
                          monopolistic dream         problem, because
  capability, political
                            of taking over the       they do not regard
 will and transparency
                          whole global market       their data as part of
 to run a semantically
                             for themselves           the patient’s Life
interoperable national
                                                       Health Record
     ehealth project
THE CONSEQUENCES OF HEALTHCARE
              COMPLEXIT Y (2)


Semantic interoperability is critical, but healthcare complexity brings
another intractable issue even for self-contained systems: maintenance

In healthcare, you define your data model today and it does not last 6 months, because
healthcare concepts evolve fast and new concepts come along every day
It is virtually impossible to make a customer satisfied with a default application; the
requisites are completely different, even for the simpler cases (e.g. two NHS GPs)


In real life, the average time for a medical software to be abandoned is
2 years and the abandon rate is 70% (source: CHAOS Report)
MULTILEVEL MODELING APPROACHES


Models           openEHR          MLHIM            13606



Approach         Maximalist      Minimalist     Reductionist


RM residual
context           Intense         Minimal       Intermediate


Data model
                 Maximum          Any size       Maximum


Possible                                        Only message
                   EMR        Any application
implementation                                    exchange
KNOWLEDGE MODELING APPROACHES


Models            openEHR             MLHIM               13606


                                 Concept Constraint
Structure         Archetype       Definition (CCD)
                                                         Archetype



Language            ADL           XML Schema               ADL


# of
                    One            Any number              One
structures /
concept

Governance           Top-          Bottom-up,               Top-
model          down, consensus       merit            down, consensus
THE MLHIM SPECIFICATIONS
              IMPLEMENTATION
 The MLHIM Reference Model
   XML Schema
   Graphical representation

 Examples of CCDs
   ICD-10 4-digit codes for Respiratory Tuberculosis (A15. -)
   Demography NCI Standard Template

 The Data Model Converter to CCD

 The CCD Repository Uploader


                        Code available at:
           www.mlhim.org or https://launchpad.net/mlhim
THANK YOU!

           谢谢!
OBRIGADA!

      lutricav@lampada.uerj.br

      tim@mlhim.org

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Presentation HealthCom 2012

  • 1. KNOWLEDGE ENGINEERING OF HEALTHCARE APPLICATIONS BASED ON MINIMALIST MULTILEVEL MODELS EXPANDING THE SCOPE OF EHEALTH: FROM ELECTRONIC HEALTH RECORDS TO BIOMEDICAL APPLICATIONS Luciana Tricai Cavalini Timothy Wayne Cook Department of Health Information Technology MLHIM Associated Laboratory Medical Sciences College National Institute of Science and Technology – Rio de Janeiro State University Medicine Assisted by Scientific Computing
  • 2. DYNAMICS AND COMPLEXIT Y IN HEALTHCARE Time Healthcare systems are Space much more complex than any other sector of human society, regarding 3 dimensions: Ontology
  • 3. WHY HEALTHCARE IS SO COMPLEX?  Healthcare is the only economic sector that deals with biological production processes (which are created by nature)  All other economic sectors deal with industrial production processes (which are created by the man)  Production processes that are created by the man are much simpler than the biological processes, because: Civilization starts just dozens of Evolution had millions of years to thousands of years ago reach to that complexity Biological systems are as complex as Industrial systems are as simple as necessary to guarantee the survival possible to maximize profit of the species See Dawkins R. The greatest show on earth, pp. 204-5, and Marx K. Complete works.
  • 4. THE ONTOLOGICAL COMPLEXIT Y In practical terms; building a The greatest medical Thus, in “megalithic system” terminology medicine, there are that all healthcare (SNOMED-CT) has roughly 310,000 settings could use more than 310,000 concepts, connected would require a terms, connected by to each other by great amount of more than millions of different tables with 310,000 1,000,000 links ways fields and millions of relationships Cavalini-Cook Conjecture: The probability of consensus between 2 or more experts from the same field regarding which would be the “maximum data model” for any given healthcare concept tends to zero
  • 5. THE CONSEQUENCES OF HEALTHCARE COMPLEXIT Y (1) This complexity turns a computer science problem that does not exist (or at least it is not critical) in any other sector of human society into a very important issue in healthcare. This problem is:
  • 6. Chest X-Ray: - Nodule in right apex - Cough - For 3 months - Cough - Low fever - For 3 months BAL: - Low fever - TB Chest X-Ray: - Nodule in right apex BAL: - TB Chest X-Ray: - Nodule in right apex - Cough - For 3 months - Low fever
  • 7. A UNDERESTIMATED PROBLEM Semantic interoperability in healthcare is not perceived as a problem by the vast majority of health informaticians because: Apparently, it only Academic projects concerns national Most software are usually focused governments, and no companies are on a very specific country nowadays has satisfied with their subject, and recording the required customer portfolio or their data in isolated combination of still dream the old silos is not seen as a technical monopolistic dream problem, because capability, political of taking over the they do not regard will and transparency whole global market their data as part of to run a semantically for themselves the patient’s Life interoperable national Health Record ehealth project
  • 8. THE CONSEQUENCES OF HEALTHCARE COMPLEXIT Y (2) Semantic interoperability is critical, but healthcare complexity brings another intractable issue even for self-contained systems: maintenance In healthcare, you define your data model today and it does not last 6 months, because healthcare concepts evolve fast and new concepts come along every day It is virtually impossible to make a customer satisfied with a default application; the requisites are completely different, even for the simpler cases (e.g. two NHS GPs) In real life, the average time for a medical software to be abandoned is 2 years and the abandon rate is 70% (source: CHAOS Report)
  • 9. MULTILEVEL MODELING APPROACHES Models openEHR MLHIM 13606 Approach Maximalist Minimalist Reductionist RM residual context Intense Minimal Intermediate Data model Maximum Any size Maximum Possible Only message EMR Any application implementation exchange
  • 10. KNOWLEDGE MODELING APPROACHES Models openEHR MLHIM 13606 Concept Constraint Structure Archetype Definition (CCD) Archetype Language ADL XML Schema ADL # of One Any number One structures / concept Governance Top- Bottom-up, Top- model down, consensus merit down, consensus
  • 11. THE MLHIM SPECIFICATIONS IMPLEMENTATION  The MLHIM Reference Model  XML Schema  Graphical representation  Examples of CCDs  ICD-10 4-digit codes for Respiratory Tuberculosis (A15. -)  Demography NCI Standard Template  The Data Model Converter to CCD  The CCD Repository Uploader Code available at: www.mlhim.org or https://launchpad.net/mlhim
  • 12. THANK YOU! 谢谢! OBRIGADA! lutricav@lampada.uerj.br tim@mlhim.org