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Research Planning
        Dr. Benjamin C. Flores
                  Acting Dean
         The Graduate School
—  The
      word "thesis" comes from the Greek
 θέσι, meaning "position", and refers to an
 intellectual proposition.

—  "Dissertation"
                comes from the Latin
 dissertātiō, meaning "discourse."




Thesis or Dissertation?
—  Settle on a research   field
—  Seek an advisor
  ◦  Let the advisor find you
—  Seek   sources of funding
  ◦  Start up funds
  ◦  Scholarships/Fellowships
  ◦  RAs
  ◦  Wrap up funds



It s Never to Early to Start
—    A thesis or dissertation committee is a committee that
      supervises a student's dissertation.
—    This committee, consisting of a primary supervisor or
      advisor and two or more committee members, supervises
      the progress of the dissertation and may also act as the
      examining committee, or jury, at the oral examination of
      the thesis.
—    The committee is chosen by the student in conjunction with
      his or her primary adviser, usually before completion of the
      comprehensive examinations.
—    The committee members are doctors in their field (whether
      a PhD or other designation) and have the task of reading
      the dissertation, making suggestions for changes and
      improvements, and sitting in on the defense.
—    At least one member of the committee must be a professor
      in a department that is different from that of the student.

                          http://en.wikipedia.org/



The Committee
—  Advisor   (Chair)

—  Committee    Members
  1
  2
  3

—  External   Committee Member(s)
  1
  2




Who s Who in Your Committee?
—  The
     research plan serves very important
 functions:
  ◦  It contributes to your development as an
     investigator
  ◦  It s a map for your dissertation
  ◦  It demonstrates your intellectual vision and
     aspirations
  ◦  It's also an opportunity to begin to
     demonstrate the creative and independent
     thinking required of a successful research
     professional

          http://sciencecareers.sciencemag.org/career_development/


Function of the Research Plan
—  Determining  the research topic
—  Creating structure and clarifying
    expectations
—  Approve final defense


            Doing the right thing




What is their Function?
—  Keep it short
—  Write it carefully
—  Include an executive summary
—  Pay attention to the layout
—  Use good graphics
—  Focus on the work, not yourself
—  Avoid obvious mistakes
—  Avoid obvious hype




First Good Impressions
—  Goal
—  Hypotheses/Research               Questions
—  Keywords
—  Background        (References)
—  Significance
—  Research     Method (Design)

  http://www.utexas.edu/academic/ctl/assessment/iar/research/plan/




Outline of a Plan
—  A goal is an overarching principle that
    guides decision making
—  Objectives are specific, measurable steps
    that can be taken to meet the goal

               S Specific
               M Measurable
               A Attainable
               R Relevant
               T Time-bound




Goals or Objectives?
1.    Goals are ________      1.    Objectives are narrow

2.    Goals are general       2.    Objectives are _____

3.    Goals are sometimes     3.    Objectives are
      ________                      tangible

                              4.    Objectives are
4.    Goals are abstract
                                    ______
5.    Goals are generally     5.    Objectives are
      difficult to ________         measurable




Goals v. Objectives
—  Goal



—  Objective   1


—  Objective   2




Goal and Objectives
Literature Review
First Finding    Citation




Second Finding   Citation
Research Plan
Hypothesis I    Method of Analysis I




Hypothesis II   Method of Analysis II
—  Analysis/Synthesis
  ◦  One method per hypothesis
—  Compliance
  ◦  Protect Human Subjects
  ◦  Adhere to Animal Welfare Regulations
—  Timeline
—  Evaluation
—  Limitations
—  Anticipated Results
—  Future Work



Research Method
Category                    Description

—    Knowledge          Ability to recall previously learned material.

—    Comprehension      Ability to grasp meaning, explain, restate ideas.

—    Application        Ability to use learned material in new situations.

—    Analysis           Ability to separate material into component parts
      and show                     relationships between parts.

—    Synthesis          Ability to put together the separate ideas to form
      new                whole, establish new relationships.

—    Evaluation         Ability to judge the worth of material against
      stated criteria.




Bloom s Taxonomy of
Cognitive Learning
—  Intellectual   Merit
  ◦  Why is it necessary?
  ◦  Does it fill a gap in the literature?
  ◦  Does it advance discovery?
  ◦  Is it potentially transformative?
—  Broader   Impacts
  ◦  Who will benefit and how?
  ◦  How will you communicate your research
     findings?
  ◦  How will you make sure the public has access
     and can understand your findings?



NSF Review Criteria
Photochemical synthesis of glycopeptides and peptide thioesters
PI: Katja Michael, The University of Texas at El Paso

    Since glycoproteins of moderate size can now be synthesized in homogeneous form by native chemical ligation
   techniques, there is a great demand for their synthetic building blocks, i.e. thioester (glyco) peptides and
   glycopeptides with an N-terminal cysteine. An original concept based on the photochemical acylation of thiols
   and glycosylamines under mild reaction conditions will be established in order to afford thioester peptides and
   glycopeptides. Thioesterpeptides are prone to C-terminal epimerization during standard acylation conditions. In
   contrast, their photochemical generation under neutral or weakly basic conditions is expected to produce
   minimal amounts of epimerized byproduct, which will contribute to improved reaction yields, and thus to the
   overall reaction yield of glycoproteins synthesized by native chemical ligation. This photochemical method is also
   ideal for the synthesis of thioester peptides with acid sensitive glyco moieties. The glycopeptide can be
   synthesized by SPPS using the Fmoc strategy, followed by photochemical conversion into its thioester without
   losses of the carbohydrate moiety. Furthermore, the photochemical approach proposed here will also generate
   N-glycopeptides in a highly convergent and concise manner. The P.I.'s recent research results demonstrate that
   photochemical acylation condition minimizes aspartimide formation and thus increases the product yield. The
   P.I. endeavors a novel and broadly applicable, photochemical approach to make these important
   peptide derivatives better accessible to the scientific community. Developing novel methods for the
   efficient synthesis of thioester peptides and glycopeptides has cross-disciplinary implications. Not only does it
   expand the synthetic methodologies available to organic chemists, but biophysicists, glycobiologists,
   spectroscopists, and pharmacologists will also benefit from the improved accessibility of pure, homogeneous
   glycoproteins in large quantities.




Intellectual Merit
—    Offering national or international summer research or outreach programs for middle
      and high school students, high school teachers, or undergraduate students including
      many from underrepresented groups.

—    Organizing national and international workshops or symposia for faculty or students.

—    Training and mentoring students to be future professionals.
—    Strengthening the chemical workforce through curriculum development.

—    Implementing strategies to increase the number of women and minority chemists in
      tenured academic positions in research universities.

—    Updating curriculum by writing texts or developing new classroom instructional
      materials and laboratory experiments.

—    Introducing students to authentic research experiences in the first- and second-year
      chemistry laboratory curriculum.

—    Working with science centers to disseminate their research and educational activities
      to a broad audience via exhibits, outreach programs, activities or events.

—    Mentoring junior faculty.




Broader Impacts
http://www.sthelena.vic.edu.au/libraryonline/resear3.gif
Gantt Chart
 —  Objectives
 —  Activities
 —  Periods
 —  Milestones




            http://www.vertex42.com/ExcelTemplates/
Gantt Chart
Objective   January   February   March   April   May   June
/Activity

1.1



1.2



2.1



2.2
—    Manage Time
      ◦  Differentiate between the urgent and the important.
      ◦  Write 15–30 minutes daily.
      ◦  Keep records of writing daily; share your records weekly.
—    Write
      ◦  Write from the first day of your research project.
      ◦  Post your thesis on the wall and write to it.
—    Revise
      ◦  Organize around key sentences.
      ◦  Use your key sentences as an after-the-fact outline.
—    Get Help
      ◦  Share early drafts with non-experts and later drafts with experts.
      ◦  Learn how to listen.
      ◦  Respond to each specific comment.
—    Polish and Publish
      ◦  Read your prose out loud.
      ◦  Kick it out the door, and make em say, No.


         http://www.taragray.com/workshops/publish.html


Publish and Flourish
Research Planning, Spring 2011
Research Planning, Spring 2011

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Research Planning, Spring 2011

  • 1. Research Planning Dr. Benjamin C. Flores Acting Dean The Graduate School
  • 2. —  The word "thesis" comes from the Greek θέσι, meaning "position", and refers to an intellectual proposition. —  "Dissertation" comes from the Latin dissertātiō, meaning "discourse." Thesis or Dissertation?
  • 3. —  Settle on a research field —  Seek an advisor ◦  Let the advisor find you —  Seek sources of funding ◦  Start up funds ◦  Scholarships/Fellowships ◦  RAs ◦  Wrap up funds It s Never to Early to Start
  • 4.
  • 5. —  A thesis or dissertation committee is a committee that supervises a student's dissertation. —  This committee, consisting of a primary supervisor or advisor and two or more committee members, supervises the progress of the dissertation and may also act as the examining committee, or jury, at the oral examination of the thesis. —  The committee is chosen by the student in conjunction with his or her primary adviser, usually before completion of the comprehensive examinations. —  The committee members are doctors in their field (whether a PhD or other designation) and have the task of reading the dissertation, making suggestions for changes and improvements, and sitting in on the defense. —  At least one member of the committee must be a professor in a department that is different from that of the student. http://en.wikipedia.org/ The Committee
  • 6. —  Advisor (Chair) —  Committee Members 1 2 3 —  External Committee Member(s) 1 2 Who s Who in Your Committee?
  • 7. —  The research plan serves very important functions: ◦  It contributes to your development as an investigator ◦  It s a map for your dissertation ◦  It demonstrates your intellectual vision and aspirations ◦  It's also an opportunity to begin to demonstrate the creative and independent thinking required of a successful research professional http://sciencecareers.sciencemag.org/career_development/ Function of the Research Plan
  • 8. —  Determining the research topic —  Creating structure and clarifying expectations —  Approve final defense Doing the right thing What is their Function?
  • 9.
  • 10. —  Keep it short —  Write it carefully —  Include an executive summary —  Pay attention to the layout —  Use good graphics —  Focus on the work, not yourself —  Avoid obvious mistakes —  Avoid obvious hype First Good Impressions
  • 11. —  Goal —  Hypotheses/Research Questions —  Keywords —  Background (References) —  Significance —  Research Method (Design) http://www.utexas.edu/academic/ctl/assessment/iar/research/plan/ Outline of a Plan
  • 12. —  A goal is an overarching principle that guides decision making —  Objectives are specific, measurable steps that can be taken to meet the goal S Specific M Measurable A Attainable R Relevant T Time-bound Goals or Objectives?
  • 13. 1.  Goals are ________ 1.  Objectives are narrow 2.  Goals are general 2.  Objectives are _____ 3.  Goals are sometimes 3.  Objectives are ________ tangible 4.  Objectives are 4.  Goals are abstract ______ 5.  Goals are generally 5.  Objectives are difficult to ________ measurable Goals v. Objectives
  • 14. —  Goal —  Objective 1 —  Objective 2 Goal and Objectives
  • 15. Literature Review First Finding Citation Second Finding Citation
  • 16.
  • 17. Research Plan Hypothesis I Method of Analysis I Hypothesis II Method of Analysis II
  • 18. —  Analysis/Synthesis ◦  One method per hypothesis —  Compliance ◦  Protect Human Subjects ◦  Adhere to Animal Welfare Regulations —  Timeline —  Evaluation —  Limitations —  Anticipated Results —  Future Work Research Method
  • 19. Category Description —  Knowledge Ability to recall previously learned material. —  Comprehension Ability to grasp meaning, explain, restate ideas. —  Application Ability to use learned material in new situations. —  Analysis Ability to separate material into component parts and show relationships between parts. —  Synthesis Ability to put together the separate ideas to form new whole, establish new relationships. —  Evaluation Ability to judge the worth of material against stated criteria. Bloom s Taxonomy of Cognitive Learning
  • 20. —  Intellectual Merit ◦  Why is it necessary? ◦  Does it fill a gap in the literature? ◦  Does it advance discovery? ◦  Is it potentially transformative? —  Broader Impacts ◦  Who will benefit and how? ◦  How will you communicate your research findings? ◦  How will you make sure the public has access and can understand your findings? NSF Review Criteria
  • 21. Photochemical synthesis of glycopeptides and peptide thioesters PI: Katja Michael, The University of Texas at El Paso Since glycoproteins of moderate size can now be synthesized in homogeneous form by native chemical ligation techniques, there is a great demand for their synthetic building blocks, i.e. thioester (glyco) peptides and glycopeptides with an N-terminal cysteine. An original concept based on the photochemical acylation of thiols and glycosylamines under mild reaction conditions will be established in order to afford thioester peptides and glycopeptides. Thioesterpeptides are prone to C-terminal epimerization during standard acylation conditions. In contrast, their photochemical generation under neutral or weakly basic conditions is expected to produce minimal amounts of epimerized byproduct, which will contribute to improved reaction yields, and thus to the overall reaction yield of glycoproteins synthesized by native chemical ligation. This photochemical method is also ideal for the synthesis of thioester peptides with acid sensitive glyco moieties. The glycopeptide can be synthesized by SPPS using the Fmoc strategy, followed by photochemical conversion into its thioester without losses of the carbohydrate moiety. Furthermore, the photochemical approach proposed here will also generate N-glycopeptides in a highly convergent and concise manner. The P.I.'s recent research results demonstrate that photochemical acylation condition minimizes aspartimide formation and thus increases the product yield. The P.I. endeavors a novel and broadly applicable, photochemical approach to make these important peptide derivatives better accessible to the scientific community. Developing novel methods for the efficient synthesis of thioester peptides and glycopeptides has cross-disciplinary implications. Not only does it expand the synthetic methodologies available to organic chemists, but biophysicists, glycobiologists, spectroscopists, and pharmacologists will also benefit from the improved accessibility of pure, homogeneous glycoproteins in large quantities. Intellectual Merit
  • 22. —  Offering national or international summer research or outreach programs for middle and high school students, high school teachers, or undergraduate students including many from underrepresented groups. —  Organizing national and international workshops or symposia for faculty or students. —  Training and mentoring students to be future professionals. —  Strengthening the chemical workforce through curriculum development. —  Implementing strategies to increase the number of women and minority chemists in tenured academic positions in research universities. —  Updating curriculum by writing texts or developing new classroom instructional materials and laboratory experiments. —  Introducing students to authentic research experiences in the first- and second-year chemistry laboratory curriculum. —  Working with science centers to disseminate their research and educational activities to a broad audience via exhibits, outreach programs, activities or events. —  Mentoring junior faculty. Broader Impacts
  • 23.
  • 25. Gantt Chart —  Objectives —  Activities —  Periods —  Milestones http://www.vertex42.com/ExcelTemplates/
  • 26. Gantt Chart Objective January February March April May June /Activity 1.1 1.2 2.1 2.2
  • 27. —  Manage Time ◦  Differentiate between the urgent and the important. ◦  Write 15–30 minutes daily. ◦  Keep records of writing daily; share your records weekly. —  Write ◦  Write from the first day of your research project. ◦  Post your thesis on the wall and write to it. —  Revise ◦  Organize around key sentences. ◦  Use your key sentences as an after-the-fact outline. —  Get Help ◦  Share early drafts with non-experts and later drafts with experts. ◦  Learn how to listen. ◦  Respond to each specific comment. —  Polish and Publish ◦  Read your prose out loud. ◦  Kick it out the door, and make em say, No. http://www.taragray.com/workshops/publish.html Publish and Flourish