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Amman Workshop - Overview - M MacKay

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Bioversity International
Bioversity International
TechnologyEducation
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Global information on germplasm accessions project – an overview Michael Mackay
What is the project about? ,[object Object]
GCDT Vision of a Global System Based on a slide by Cary Fowler Global System Rational Efficient Effective Cost-efficient Sustainable
What is the project about? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Project has 3 components plus DATA!!
What is the project about? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Data adds value to PGR ,[object Object],[object Object],[object Object],[object Object]
So what’s the problem? ,[object Object],[object Object],[object Object],Courtesy: R Sackville-Hamilton Vavilov (1957) emphasizes need to select correct ‘ starting material’ for crop improvement.
Global portal for accessing and utilizing PGR National Focal Point regional global national CGN GRIN NGB BLE AGRI VIR NFPs/NIs.. CGIAR / SINGER EUROPA /EURISCO North America /GRIN NDL AZE RUS … ISL NOR DNK SWE FIN USA CAN DEU Global System … = “Who has What and Where?” Passport Phenotype Others … Models MLS AEGIS sMTA,Others Models Passport Phenotype Others … Models
Information adds value - ,[object Object]
Example of Impact : Allele mining 1 FIGS = Focused Identification of Germplasm Strategy (various, incl. Mackay et al , manuscript in preparation) 2 Kaur et al. Eur J Plant Pathol (2008) 121:387–397 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
C & E Data ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Location C & E “ +” Data P Data Methods Users ?? ? answer Location
Needle in a haystack? 6 million accessions in 1500 gene banks ?? Scientist wants a few hundred accessions to evaluate for a particular trait How does the scientist select a small subset likely to have the trait?
C & E Data Options ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Other data options ,[object Object],[object Object],[object Object]
Another option to consider…
The project also… ,[object Object],[object Object],[object Object],[object Object],[object Object]
Demonstration web site - 01
Adding environmental data…
And visualization functionality ….
Thank you

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Amman Workshop - Overview - M MacKay

  • 1. Global information on germplasm accessions project – an overview Michael Mackay
  • 2.
  • 3. GCDT Vision of a Global System Based on a slide by Cary Fowler Global System Rational Efficient Effective Cost-efficient Sustainable
  • 4.
  • 5. Project has 3 components plus DATA!!
  • 6.
  • 7.
  • 8.
  • 9. Global portal for accessing and utilizing PGR National Focal Point regional global national CGN GRIN NGB BLE AGRI VIR NFPs/NIs.. CGIAR / SINGER EUROPA /EURISCO North America /GRIN NDL AZE RUS … ISL NOR DNK SWE FIN USA CAN DEU Global System … = “Who has What and Where?” Passport Phenotype Others … Models MLS AEGIS sMTA,Others Models Passport Phenotype Others … Models
  • 10.
  • 11.
  • 12.
  • 13. Location C & E “ +” Data P Data Methods Users ?? ? answer Location
  • 14. Needle in a haystack? 6 million accessions in 1500 gene banks ?? Scientist wants a few hundred accessions to evaluate for a particular trait How does the scientist select a small subset likely to have the trait?
  • 15.
  • 16.
  • 17. Another option to consider…
  • 18.