A new flora fauna mycota should...
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The document discusses the potential features and capabilities of a future digital flora, fauna, and mycota resource. It suggests that it should allow users to provide and harvest marked up content, integrate with other knowledge, allow versioning and tracking changes, hold conflicting opinions, and continually grow in an open and accessible way through crowd-sourced semantic enrichment. Usage statistics are provided for the existing Biodiversity Heritage Library, including over 390,000 views and 1,200 data sets contributed.
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A new flora fauna mycota should...
- 1. What should a flora/fauna/mycota of the future be able to do for me? William Ulate BHL Technical Director Global BHL Coordinator Berlin, Germany May 21, 2013
- 2. Global…
- 3. New Partners and Geographies
- 4. Dear Sir / Madam Can i just congratulate you on an absolutely brilliant online resource. I am compiling a report on an invasive hydromedusae and could not believe the ease and efficiency of this web page which genuinely saved me weeks of my life Research that previously took months now takes only a few hours La plus grande #bibliotheque #botanique & #zoologique online The largest online botanical & zoological #library #BHL The freeing of knowledge may lead to new discoveries and changes in the way the natural world is perceived
- 5. 22.00 40.00 84.86 94.6 105.85 9.2 16.4 31.8 35.4 38.9 - 20 40 60 80 100 120 Oct-08 Oct-09 Oct-10 Oct-11 Oct-12 Pages (Millions) and Volumes (in Thousands) included in BHL Volumes (K) Pages (M) More Online Content
- 6. Global Replication & Serving Replicated Data Center Portal Application
- 7. For me a future Flora/Fauna/Mycota should… learn from (the errors of) the past...
- 8. I may want to find new things later…
- 9. Taxon Names BEFORE Name Instances 101,591,803 101,288,804 Unique Names 7,498,554 7,464,924 Verified Names 1,905,507 1,902,803 EOL Names 63,130,350 62,963,582 EOL Pages 13,579,868 13,532,684 AFTER Name Instances 151,222,182 150,066,425 Unique Names 29,246,382 29,091,767 Verified Names 10,153,165 10,109,540 EOL Names 87,791,695 87,135,089 EOL Pages 15,466,713 15,342,867
- 10. Scientific Name Extraction • TaxonFinder algorithm in production since 2008 – More than 100 million candidate name strings – More than 1.5 million unique, verified names – Available through UI, APIs, Data Exports & Internet Archive • New collaboration with Global Names – Improved algorithm, better precision & recall – More data with TaxonFinder and Neti Neti!
- 11. For me a future Flora/Fauna/Mycota should… allow me to provide and harvest marked up content with names of people & organizations, places, taxa, specimens, illustrations, coordinates, citations, tables of context and indexes.
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- 13. Images
- 14. Crowdsource Markup Display text Species Profile Model category General/summary TaxonBiology Geographic range Distribution Habitat Habitat Food sources and feeding behavior TrophicStrategy Physical description (general) Description Physical description (detailed morphology) DiagnosticDescription
- 15. For me a future Flora/Fauna/Mycota should… be digital, openly and freely accessible, marked up and mark-able by users, linked and registered in a Common Framework that allows for gradual crowd-sourced incremental semantic enrichment with proper attribution
- 17. > 390,000 views in 10 months > 1200 sets > 60,000+ images
- 21. For me a future Flora/Fauna/Mycota should… be easy to integrate with other knowledge, allow versioning and track changes, hold and show conflicting opinions Independent of format, mobile enabled & be continually growing.
- 22. Thank you William Ulate Global BHL Project Manager / Technical Director Missouri Botanical Garden william.ulate@mobot.org Skype: william_ulate_r
Notas del editor
- For the meeting on Wednesday on legacy literature, we would like to ask you to give a brief (5-10min) outline of what your plans are with BHL, and especially your move into content. This would be helpful for a more informed following discussion.
- ExtensiveAiming for a critical mass of biodiversity literatureGlobalOriginating in the US and UK, BHL now has nodes in Europe, China, Australia, Brazil, Egypt, and AfricaOpen Data is freely available for viewing, downloading, and re-use
- On legacy literature, what your plans are with BHL, and especially your move into content?
- Mention Neti Neti
- You can see from this slide that accuracy goes way down when processing older blackletter-type typefaces.
- On legacy literature, what your plans are with BHL, and especially your move into content?GrowthMore Global ContentTaxon NamesArticle MetadataMicrocitations and COiNSAPIZoobankOCR improvements through GamingCrowdsource MarkupWFO?
- Natural history illustrations from the Biodiversity Heritage Library seem to leap across boundaries while being catalogued, emerging simultaneously as history, science and art. As historic documents, they paint a vibrant picture of the first time European scientists and explorers encountered exotic plants and animals in the 17th and 18th centuries, drawn by some of the finest illustrators of the world. Also, as biodiversity records, they provide valuable documentation of when, where, and who first observed a species, and some of them are our only surviving representations of extinct species. Finally, as aesthetic elements, they communicate human emotions and other values toward nature by exemplifying the mimesis in art and providing a vivid expression of human creativity and imagination.This year, the Missouri Botanical Garden received a grant from the National Endowment for the Humanities (NEH) to support a project called The Art of Life: Data Mining and Crowdsourcing the Identification and Description of Natural History Illustrations from the Biodiversity Heritage Library (BHL).
- The authors have worked on the development of an effective metadata schema for such natural history illustrations, but instead of developing yet another schema from scratch, they have identified existing schemas that meet the needs of the project and integrated a solution that combines the best in biodiversity informatics and image curation standards and best practices. This schema needs to support three main objectives: (1) to enable the discovery, description and use of the identified images by artists, biologists, humanities scholars, and educators; (2) to make BHL’s metadata and images available to other platforms; and (3) to import crowdsourced metadata generated in other platforms back into BHL..A preliminary schema version will be presented to the TDWG community, explaining how we addressed metadata challenges specific to biodiversity data, in order to obtain feedback on the final version.