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Welcome
RECENT ADVANCES IN IMPROVEMENT OF
VEGETABLE CROPS IN INDIA
Credit Seminar II (VSC-692)
Presented by:Aditika
H-14-33-D
PhD IInd year
Need for improvement of vegetable crops
To
develop
varieties
Higher yield and
better quality
Photo insensitivity
and area of
adaptability
Resistance to biotic
and abiotic stresses
Long shelf life and
export quality
produce
Better nutritional,
processing quality
and seed
production
Genetic Improvement
of vegetable crops
Conventional Method Non- Conventional
Method
Genes for both desirable
and undesirable traits
Breeders conserve desired
ones by repeatedly
selection
Molecular techniques
(selection based on the
genotype of marker)
Cell and tissue culture
technique
Breeding methods of vegetable improvement
Conventional Methods
• Introduction
• Pure line selection
• Mass selection
• Pedigree method
• Single seed descent method
• Back cross method
• Bulk method
• Recurrent selection
• Heterosis breeding
• Synthetic breeding
• Clonal Selection etc.
Advance Breeding techniques
• Mutation breeding
• Polyploidy breeding
Non conventional methods
• Genetic Engineering
• Molecular breeding(MAS)
• Tissue culture
• Somatic hybridization etc.
Varieties through introduction in India
Crop Introduction
Tomato Sioux, Roma, Marglobe, Fire Ball, Best of All, La Bonita, Money Maker
Bell pepper California Wonder, Yolo Wonder, World Beater
French bean Contender, Kentucky Wonder, Premier
Cucumber Poinsette and Japnese Long Green
Onion Early Grano, Red Grano, Bermuda Yellow
Pea Arkel, Bonneville, Early Badger, Lincoln
Cauliflower Snowball-16, Improved Japanese, Early Snowball
Cabbage Golden Acre, Drum Head
Radish Japanes White, Rapid Red White Tipped, China Red, Red Tail Radish
Carrot Nantes, Chanteny
Turnip Snowball, Golden Ball, Purple Top White Globe
Varieties developed through selection
Kalloo G. 1998
Pusa Purple Long, Pusa Purple
Round, Pusa Purple Cluster,
Pant samrat, Arka Sheel
Egg Plant
NP 46 A, Sindhur, Patna Red Chilli
Hara Madhu, Arka Jeet, Arka
Rajhans, MH-1
Muskmelon
Pusa Summer Prolific Long,
Pusa Summer Prolific Round
Bottle Gourd
Pusa Red, Pusa Ratnar, Arka
Niketan, Arka Pragati
Onion
Pusa Katki and Pusa Dipali cauliflower
Solan Vajar, Solan Lalima,
Solan Red Round, Pusa 120,
HS-110
Tomato
Varieties developed through hybridization
Tomato Pusa Ruby, Pusa Gaurav, Pusa Early
Dwarf, Arka Meghali, Hissar Anmol,
Punjab Chhuhara,
Brinjal Pusa Kranti, Hissar Shyamal
Muskmelon Pusa Sharbati, Punjab Sunehri
Watermelon Arka Manik,
Cauliflower Pusa Snowball-1, Pusa Shubra
Cabbage Pusa Mukta
Carrot Pusa Kesar, Pusa Meghali, Pusa
Yamdagini
Turnip Pusa Chandrima, Pusa Swarnima, Pusa
Kanchan
Radish Punjab Safed, Pusa Himani
Achievements through conventional breeding
in India
1. Development of gynoecious lines in cucumber
Shogoin(Gynomonoecious,Peter
son and Anhder, 1960)
Chance Segregant
Gynoecious sex form
(Stable moderate temp. and
photoperiod)
Temperate X Monoecious
gynoecious
(WI2757)
Tropical Gynoecious lines(87-304-
6, 87-316, 87-319-12 and 87-
338-15 )
(F1 Phule Prachi, Phule Champa)
Parthenocarpic tropical
gynoecious line (PKG-1
series) in Poona Khira
background (More and
Badgujar, 1998)
Pusa Seedless Cucumber-6
•First extra early (40-45 days for first
fruit harvest)
•Parthenocarpic gynoecious cucumber
suitable for cultivation in protected
condition.
•Average fruit yield is 126 t/ha (1260
kg/ 100 m2) during winter season
(off-season, November-March).
• Polyploid plants are multiples of the basic chromosome
number. In vegetable breeding, 1% colchicine solution is used
• Colchiploidy is used in Palak and Potato
• The well known example of polyploidy is seedless
watermelon
4n Seed parent X 2n pollen parent
(Tetra-2) (Pusa Rasal)
F1 (Pusa Bedana)
(Sterile 3n plant)
2. Polyploidy Breeding
Continue..
 Kerala Agricultural University
(KAU), Trichur, Kerala has
developed a stable tetraploid
line of watermelon ‘KAU-CL-
TETRA-1’ through
colchiploidy.
 Two triploid hybrids i.e.
Shonima and Swarna have
been developed using this
tetraploid line through crossing
with diploid males,
 namely CL-4 (red fleshed) and
CL-5 (Yellow fleshed),
respectively.
(Vegetable Newsletter,IIVR, 2015)
Swarna (Yellow fleshed)
Shonima (Red fleshed)
3. Growing vegetables round the year
• In Recent past development has been made to
develop off-season varieties:
Crop Variety Character
Tomato Ostenkinskiz, Cold Set, Pusa Sheetal Fruit set at low
temperature
Hot Set, HS 102, Pusa Hybrid 1 Fruit set at high
tempetrature
Radish Pusa Chetki, Pusa Desi Made possible to grow
throughout year
Onion N 53, Agrifound Dark Red, Arka Kalyan,
Baswant 780
Kharif season
Cabbage Green Express, Green Boy, KK Cross,
Pusa Ageti
Tolerance to high
temperature
Varieties of carrot for round the year
cultivation
Variety Sowing time Availability Yield
(q/ha)
Pusa Vrishti July-August October-Nov. 180-200
Pusa Meghali August Nov.-Dec. 220
Pusa Rudhira , Pusa Asita, Pusa
Vasuda
Sep.-Oct. Dec.-Jan. 300-350
Pusa Yamdagini, Pusa
Nayanjyoti
Sep.-Nov. Dec.-Feb. 270-320
Pusa Yamdagini Dec.-Feb. March-May 200-250
Pusa Yamdagini, Pusa
Nayanjyoti, Nantes, Pusa Vrishti
March-April June- July 130-150
Indian Horticulture, 2015
Pusa Rudhira Pusa Asita
Pusa Vrishti Pusa Vasuda
4. F1 Hybrids
Crop F1 Hybrid Genetic Mechanism
Cabbage KGMR-1(Pusa cabbage Hybrid 1),
KTCBH 51, KTCBH 81
SI
Cauliflower Pusa Hybrid-2, Pusa Kartik Sankar SI
Cabbage KCH-5, Hybrid 991-5, Hybrid 854-6 CMS
Cauliflower Hybrid 8401 ×31022 CMS
chilli Arka Sweta, Arka Meghna, Arka Harita,
Arka Khyati, Kashi Surkh, CH-1, CH-3
CGMS and GMS
Onion Arka Kirthiman, Arka Lalima CMS
Carrot Pusa Nayanjyoti, Pusa Vasudha CMS
Cucumber Solan Khira Hybrid-1, Solan Khira
Hybrid-2
Gynoecious based F1
hybrids
5. Edible colour rich varieties of
vegetable crops
Crop Variety Pigment
Carrot Pusa Ashita Anthocyanin
Paprika KTPL-19 Capsanthin
Amaranthus Pusa Lal Chaulai Anthocyanin
Red cabbage Red Cabbage Anthocyanin
Purpule headed Broccoli Palam Vichitra Anthocyanin
Carrot Pusa Ridhira Lycopene
Pusa Vrishti Lycopene
Pusa Yamdagini Carotene
Pusa Nayanjyoti Carotene
Tomato Pusa Rohini Lycopene
Pritam Kalia , 2012
6. Cauliflower : Pusa Betakesari
•This is the first ever indigenously bred
bio-fortified beta carotene (800 – 1000
µg/100 g) rich cauliflower variety, an
attempt to tackle beta carotene
deficiency related malnutrition problem
in India
•Its curds are orange coloured, compact
and very attractive
•It is suitable for September – January
growing period
Resistance breeding
Need???
Vegetables Biotic Stresses
Residual effect
Health Hazards, reduced
export potential
Resistance breeding
Dr. G. Kalloo, Vegetable breeding
Vegetable varieties resistant to diseases in
India
Crop Disease Variety
Eggplant
Bacterial wilt
Pant Rituraj
Pusa Purple Cluster
Bacterial wilt and Phomopsis
blight
Pant Samrat
Pusa Bhairav
Tomato
Bacterial wilt BWR-5
Verticilium wilt and Fusarium
wilt
Pant Bahar
Root Knot Nematodes
Sel-120
PNR-7
Leaf curl
H-24, H-36
Yashwant
Capsicum
Bacterial wilt Arka Gaurav
Phytophthora rot Solan Bharpur (Tolerant)
Chilli
Multiple disease resistant
(Anthracnose, leaf curl, TMV,
CMV)
Punjab Lal
Continue..
Crop Disease(s) Variety
Okra YVMV
Arka Anamika
Arka Abhay
Parbhani Kranti
Watermelon Anthracnose, PM and DM Arka Manik
Muskmelon
Powdery mildew Arka Rajhans
PM and DM Punjab Rasila
Cabbage Black rot Pusa Mukta
Cauliflower Black rot
Pusa Shubra
Pusa Snowball K-1
Pea
Powdery mildew
FC-1
JP-83
PRS-4 and PM-2
Powdery mildew and rust
Mithi Phali
Solan Nirog
JP-4
French bean Angular leaf spot SVM-1
Varieties resistant to abiotic stresses in India
Crop Stress Variety
Tomato
Low temperature Pusa Sheetal
Drought
Solan Vajr, Arka
Meghali
High temperature
HS-101, HS-102 and
Pusa Hybrid 1
Salinity Pusa Ruby
Onion Salinity Hisar-2
Conventional
breeding
increasing population,
decline in agricultural
resources such as land and
water, and the apparent
plateauing of the yield curve of
the staple crops
Modern Plant breeding is a multi-
disciplinary and coordinated approach
Number of tools and elements of conventional breeding
techniques, bioinformatics, biochemistry, molecular
genetics, molecular biology and genetic engineering,
utilized and integrated
Biotechnology as a tool for vegetable
improvement
Transgenics or GM
Crops
Genetic diversity studies
Evolutionary studies
Anther culture
Embriyo Culture
Protoplast Fussion
Molecular mapping
To prepare saturated genetic map
Chromosome identification
Micro Propagation
Meristem Culture
Marker Assisted Selection
QTLs
Disease resistance
Construction of genetic maps
Biotechnology for
vegetable improvement
Genetic Engineering Molecular Markers Tissue Culture
Genetic Engineering
• Deliberate alteration of genome of an organism by
introducing one or few specific foreign genes
• GE crops are Transgenic crops or Genetically
modified (GM) crops and the gene introduced is
referred as transgene
• Creation of transgenic plants require tools of
biotechnology and those of conventional breeding
• GE supplements but not supplants breeding
Genetically modified Horticultural crops under large
scale production
Crop Transgenic trait Transgene
Tomato Suppression of PG
(Polygalactronase) to delay
fruit ripening
Antiscense construct based
on pTOM6 for
polygalactronase enzyme
Squash (Zucchini) Resistant to watermelon,
cucumber, and zucchini
yellow mosaic viruses
Virus coat protein
Sweet pepper Resistance to viruses Virus coat protein
Sugar beet Resistant to glyphosate
herbicide
-
Soyabean Resistant to glyphosate
herbicide
Glyphosate resistant
bacterial EPSPS gene, bar
gene
Bhojwani SS and Dantu PK. 2013
Application of GM crops
Resistance to biotic
stresses
• Disease resistance
• Insect Resistance
Resistance to abiotic
Stresses
• Drought resistance
• Salt resistance
• Heavy metal resistance
• `Cold tolerance
• Frost tolerance
• Resistance to
herbicides
• Induction of
engineering male
sterility
• Nutritional quality
improvement
Resistance to biotic stress
Crop Trait Gene/ lines resistance
Cabbage DBM Cry 1A
Tomato Early Blight (Arka
Vikas)
Trichoderma hazarianum chitinase
gene
Late Blight PGIP gene
Potato ToLCNDV GTLC2-127 and KPLC2-53 lines
Watermelon Bud Necrosis Transgenic watermelon cv. Arka
Manik
IIHR and CPRI annual reports, 2015
Abiotic stresses resistance
Drought tolerance in tomato:
• A novel gene likely to confer drought tolerance, cloned from
a drought tolerant land race of sorghum M-35-1, was used
for transformation of tomato. Average number of fruits and
average yield per plant was higher than control varieties.
• In Network Project on Transgenic Crops at IIVR (NPTC),
water-deficit stress tolerant transgenic tomato was developed
using AtDREB1A gene.
• Another BcZAT12 transformed tomato line was useful for
improving its quality in heat, drought or salt stressed
conditions.
Source Annual report IIVR 2012-13 and 2013-14
Salt stress tolerant transgenic tomato cv. Kashi
Vishesh - AtDREB1A gene
The salt stress exposed transgenic tomato plants
recorded :
I. higher relative water content,
II. lower membrane damage indicated by lower
electrolyte leakage and lipid peroxidation
(MDA) compared to the non-transgenic (WT)
plants.
• Over-expression of rd29A:AtDREB1A/ CBF3
imparted lower susceptibility to salt stress.
IIVR Annual Report 2014-15
Marker Assisted Selections
• MAS refers to the use of DNA markers that are
tightly-linked to target loci as a substitute for
or to assist phenotypic screening.
• Marker-assisted selection (MAS) provided a
potential for increasing selection efficiency by
allowing for earlier selection and reducing
plant population size used during selection
Genome Sequencing
How next generation sequencing helps crop improvement:
 To develop millions of novel markers, as well as the
identification of agronomically important genes (Edwards &
Batley 2010)
 Enabled the development of high-density genetic maps
 The sequence data obtained will help to identify the genes
determining different traits
 These data enable the unravelling of the regulatory
mechanisms behind different traits, and help to elucidate the
complete pathway
Sequenced crop Genome
S.
N.
Crop Haplod
chr. no.
Estimated
genome
size (Mb)
No. of gene
prediction
References
1 Cucumber 7 367.00 26,682 Huang et al. (2009)
2 Musk melon 12 450.00 27,427 Gonzalez et al. (2010)
3 Potato 12 844.00 39,031 The potato genome sequencing
consortium (2011)
4 Chinese cabbage 10 529.00 41,174 The Brassica rapa genome
Sequencing project consortium
(2011)
5 Tomato 12 900.00 34,727 The tomato genome consortium
(2012)
6 Water melon 11 425.00 23,440 Gau et al. (2013)
7 Brinjal 12 1126.00 85,446 Hirakawa et al. (2014)
8 French bean 11 587.00 27,197 Schmutz et al. (2014)
9 Chilli 12 3480.00 34,903 Kim et al. (2014)
10 Cabbage 9 630.00 45,758 Liu et ai. (2014)
Limitations and future directions of genome
sequencing
Limitations:
 large genome size
 polyploidy exhibited by many vegetable crop species impedes the
sequencing and further analysis
 A high percentage of repeat elements is also a major hurdle in
genome assembly
 Another challenge is that the functions of many genes identified by
genome sequencing remain unknown and the genetic control of the
majority of agronomic traits has yet to be determined
Future directions
 Systematic mining and utilisation of these data would help to
develop varieties with higher yield and tolerance to biotic as well as
abiotic stresses, and would boost up the economy of tropical
countries like INDIA .
Other techniques
Technique Application
Meristem and bud culture Micropropagation for commercial purposes, genetic
conservation, and exchange of material
Zygotic embryo culture Interspecific crosses
Anther and microspore
culture
Haploid production
Protoplast culture Fusion for somatic hybridization
Advances in improvement of bulbous
crops
Breeding achievements and challanges
 Continuous cultivation, acclimatization and selection by farmers and researchers
have converted onion from long day crop to short day under Indian conditions
 Although huge genetic diversity is available in bulb onion, crop improvement
progress is not at the pace of other crops (McCallum 2007, Varshney et al.
2012)
 Systematic breeding was started with mass selection in various countries during
the 19th century, and the discovery of cytoplasmic male sterility paved the way
for development of F1 hybrids in the middle of 20th century (Brewster 2008,
McCallum et al. 2008).
 Sen and Srivastava (1957) attempted to develop F1 hybrids in onion as early as
in 1948 using exotic male sterile lines and Indian local male stocks.
 The exotic male sterile lines were found unsuitable in the photo periodically
different environment in India.
 At IARI, the male sterility was isolated in a commercial variety ‘Pusa Red’
Continue…
Till today in India Arka Kirthiman (MS-65 x
Sel.13-1-1) and Arka Lalima (MS-48 x Sel.14-
1-1) two F1 has developed using cytoplsmic
genotypes.
F1 hybrids dominate in many countries in the
world but in India OP varieties dominate
Continue..
Germplasm:
Major gene bank of onion in the world
Khosa et al. 2016
Marker Assisted breeding
 Molecular markers can be used in onion for germplasm
characterization and identification of cytoplasmic male
sterility in onion for development of hybrids
 Male sterile and maintainer lines were identified using
molecular markers in three long day onion populations.
Molecular markers, 5’cob and orfA501 were able to
distinguish effectively normal (N) and sterile (S) cytoplasm
in all the three populations (Saini et al. 2015)
 An identified molecular marker orf 725 is used to
distinguish male sterile and maintainer genotypes
maintained at Indian Institute of Horticultural Research
Station, Hesaraghatta, Bangalore (Karnataka), India.
(Dhanya et al. 2014)
Haploid breeding
• High heterozygosity in inbred lines resulting from limited (2 or 3) cycle of
self-pollination is a major bottleneck in heterosis breeding in onion.
• And being biennial in nature require almost 10 years to develop an inbred
through conventional method.
• DH provides complete homozygosity and phenotypic uniformity.
• DH hybrids tested were superior for mean row weight and mean bulb
weight creates a pool of experimental hybrids to allow further selection of
those hybrids with the preferred quality characteristics. The DH line
CUDH066631 performed better than all others (Hyde et al. 2012)
• Work is at its embryonic stage in India and is being done at IIHR Bangalore
and NHRDF Nashik as well as DOGR Pune .
Garlic
• The lack of sexuality in garlic limits the increase of variability that
is useful for breeding for economically important traits, such as
tolerance to biotic and abiotic stress, earliness, yield and quality.
Disadvantages of vegetative propagation:
a) low multiplication rate,
b) expensive and short-term storage that requires wide spaces,
c) transmission of phytopathogens through generations
• Biotechnological tools such as plant tissue culture can help
overcome problems associated with vegetative propagation of garlic,
specially the low multiplication rate and disease dispersion
Micropropagation
• Improved micro
propagation protocol for
garlic can be utilized for
propagation of elite
genotype at commercial-
scale as one single bulb
can give rise to approx.
1200 bulblets (Dixit et al.
2013).
Recent advances in improvement of
Solanaceous Vegetable crops
Challenges for improvement
• Resistance to biotic Stresses
• Resistance to abiotic stresses
Biotic stresses and their source of resistance in tomato
Biotic Stress Resistance Sources
Tomato Leaf Curl
Virus (ToLCV)
L. hirsutum f. glabratum, L. peruvianum, L pimpinellifolium and L.
hirsutum, HS 101, L. hirsutum (LA386, LA 1777, PI 390513), L.
glandulosum (EC 68003) and L. peruvianum (PI 127830 and PI
127831), H-88-78-1, H-88-78-2, H-88-87
Fusarium Wilt L. hirsutum f. glabratum (Wir 4172), L. hirsutum (PI 13448) and L.
peruvianum (EC 148898),
Columbia, Roma, HS 110, Fla. 7547, Fla. 7481
Early Blight L. hirsutum (PI 134437), P-1, EC 529061, WIR-3928, H-88-28-1, H-
86-11 and H86-7
Bacterial wilt Lycopersicon pimpinellifolium, Acc 99, Sweet 72, Acc 151, Hyb 54,
IIHR 663-12-3, BWR 1, BWR
5, LE 79 BT 1, BT-10, H 24, BRH-2, LE-415, H-86, Capitan, Caravel,
Ga. 1565, Ga 219, CRA 66
Fruit Borer L. hirsutum f. glabratum
White fly L. hirsutum and L. hirsutum f. glabratum
Biotic Stresses and their Source of Resistance in
Brinjal
Biotic Stress Resistance Sources
Bacterial wilt West coast Green Round 112-8 (WCGR 128-8), S. melongena var.
incanum, S. integrifolium, S. torvum
Little leaf Solanum viarum, S. incanum, S. sisymbrifolium, Pusa Purple Cluster,
Katrai
Phomopsis blight S. xanthocarpum, S. sisymbrifolium, S. indicum, S. khasianum, S.
nigram, S. gilo, Florida Market,
Florida Beauty, BPL-1, Ornamental brinjal, Pusa Uttam, IC-316237
RKN Solanum sisymbrifolium, Co-1, Solanum torvum
Shoot and fruit
borer
Solanum sisymbrifolium, S. integrifolium, S. xanthoranpum, S.
nigrum, S. khasianum, Pusa Purple Long, H-128, H-129, Azcabey,
Thorn Pendy, Black Pendy, Banaras Long Purple.
Molecular markers linked to biotic stresses
Crop Trait Marker Reference
Tomato Fusarium wilt (race
1)
SSR (TOM-144) linked to fusarium wilt Parmar et al. (2013)
Tomato yellow leaf
curl virus
STS linked to Ty2 gene Mohamed et al. (2012)
RFLP linked to Ty1 Zamir et al.(1994)
RKN RAPD linked to Mi gene Williomson et al. (1994)
ToMV SCAR based linked to Tm1
Ishibashi et al. (2007)
Late blight (dTG63) CAPS linked to Ph2 Panthee et al. (2012)
Pepper Tomato spotted wilt
virus
RAPD linked to Tsw Jahn et al. (2000)
Potato PLRV Nl271164 (SCAR) linked to Plrv.1 (QTL) Marczewski et al.
(2001)
PVY RYSC3321 linked to Ryadg (CAPS) Kasai et al. (2000)
Multiple disease resistance in tomato
• Hybrid-369 with triple
disease resistance
(ToLCV+BW+EB)
• Marker Assisted Selection
(MAS) was employed for
pyramiding of Ty-2 and Ty-
3 genes into elite tomato
lines
• Pre-breeding was carried out
for introgression of ToLCV
resistant genes from
Solanum habrochaites.
IIHR Annual Report, 2014-15
Arka Rakshak: High yielding triple disease resistant
tomato F1 hybrid with export potential
Breeding line X Breeding Line
(IIHR Banglore) (AVRDC Tiwan)
Arka Rakshak (ToLCV + BW + EB )
 Fruits are medium to large size (80-100g), deep red, very firm with
good keeping quality (15-20 days) and long transportability
 Bred for both fresh market and processing
 Suitable for summer, Kharif and Rabi seasons
 Yields 90-100 tons per hectare in 140-150days
Molecular markers linked to Male sterility
Crop Marker Reference
Tomato C4-30 and C2-21 (CAPS)
linked to Ps and ps 2
(functional male sterile
gene)
Staniaszek et al. (2012)
Chilli RAPD to linked to Rf gene Kumar et al. (2002)
Recent advances in improvement of
cucurbits
Registered germplasm of cucurbits having some unique trait
Cucurbit Line National
Germplasm No
Registered trait
Pointed gourd IIVR PG-105 INGR-03035 Parthenocarpic fruits
Bitter gourd GY-63 INGR-03037 Gynoecious sex with high yield
Watermelon RW-187-2 INGR-01037 High yield and yellow coloured flesh
RW-177-2 INGR-01038 Leaf mutant with simple unlobed
leaves
PBOG-54 INGR-99022 Segmented leaves
Cucumber AHC-2 INGR-98017 High yield and long fruit
AHC-13 INGR-98018 Small fruit, drought and temperature
tolerant
Roundmelon HT-10 INGR-99038 Tolerant to downy mildew and root rot
wilt
Snapmelon AHS-10 INGR-98015 High yield and drought tolerance
Rai et al. 2008
Gynoecy in bitter gourd (Momordica charantia) for
exploiting hybrid vigour
 The monoecious bitter gourd accessions produce staminate flowers from the
start of reproductive phase till crop maturity and thus the staminate to
pistillate flower sex ratio in this sex type is relatively high (9:1 to 48:1; 3).
 Moreover, it creates difficulty during commercial hybrid seed production
due to its extremely small flower.
 Use of gynoecious line is an alternative to reduce the cost of hybrid seed
production.
 Two gynoecious lines (DBGy 201 and DBGy 202) lines have been
developed from natural population at IARI (Behera et al. 2006)
 The gynoecious hybrid DBGY-201 × Pusa Vishesh showed highest
heterosis (-19 %) for earliness and the hybrid DBGY- 201 × Priya was
reported to provide maximum heterosis for fruit length, weight and yield.
(Dey et al. 2008)
Male Sterility in musk melon
In India, male-sterile gene ms-1 was introduced in
1978 and used to release two commercial cultivars
Punjab Hybrid (Nandpuri et al. 1982) and Punjab
Anmol (Lal et al. 2007).
This was the first evidence of exploitation of ms-1
gene for heterosis breeding in melon.
Due to the instability of this ms-1 gene in our sub-
tropical field conditions, the seed production of
these hybrids has posed numerous problems
consistently (Dhatt and Gill 2000).
New source of cytoplasmic genic male sterility (CGMS) and
restoration of fertility gene in ridge gourd
 Two dominant fertility restorer genes (Rf1 and Rf2)
either in homozygous dominant or heterozygous
dominant condition restores the male fertility in
presence of sterile cytoplasm (Arka Sumeet)
 This is the first report of cytoplasmically controlled
male sterility (CMS) in cucurbits where two dominant
male fertility restorer nuclear genes with
complementary gene action governed the restoration of
male fertility (Kannan et al. 2014)
Resistance Breeding
Crop Disease Resistance Source
Musk melon Powdery mildew PMR 45, PMR 450, PMR 5, PMR 6, PI 124111
Downey mildew MR-1, PI 414723, DMDR-1, DMDR-2
CGMMV DVRM-1, 2, C. africanus, C. ficifolius, C. anguria
Fruit fly C. callosus
Nematodes C. metuliferus
Watermelon Fusarium wilt Summit, Conqueror, Charleston Gray, Dixilee, Crimson
Sweet
Anthracnose Fair, Charleston gray, Congo, PI 189225
Cucumber Anthracnose PI 175111, PI 175120, PI 179676, PI 182445, wise 2757
(USA)
Downey mildew B-184, B159, wise 2757 (USA)
Powdery mildew PI 200815, PI 200818, C.hardwikkii, Wise 2757 (USA)
CMV Wisc SMR-12, SMR-15, SMR-18, wise 2757 (USA)
PM and Viruses C. lundelliana, C. martenezii
ZYMV, WMV C. ecuadorensis, C. faetidistima, C. martenezii
Rai et al. (2008)
Continue ..
A total of four QTLs (pm1.1, pm2.1, pm4.1 and
pm6.1) for PM resistance were identified and
located on LG 1, 2, 4 and 6, respectively,
explaining 5.2%-21.0% of the phenotypic
variation.
Anchor markers tightly linked to those loci (<5
cM) could lay a basis for both molecular marker-
assisted breeding of the PM-resistance gene in
cucumber (Zhou et al. 2008)
Recent advances in improvement of
cole crops
F1 hybrids
F1 hybrids better to OP Varieties:
• Earliness
• High early and total yield,
• Better curd/head quality in respect of curd/head
compactness and colour
• Uniform maturity
• Better field staying capacity
• Wider adaptability
• Resistance to disease and insect
Exploitation of heterosis
Genetic mechanisms :
SI: Self-incompatibility is genetically
controlled, physiological hindrance to self-
fruitfulness or self-fertilization. (SSI- Cole
Crops)
MS: Male sterility refers to either absence
of pollen grain or if present it is non-functional
(CMS, GMS, GEMS)
Basic steps in use of SSI
1. Identification of self-incompatible plants in diverse
population/genotypes.
2. Development of homozygous self-incompatible lines.
3. Identification of S-alleles in the homozygous self-incompatible
lines.
4. Establishment of inter-allelic relationships among the S-alleles.
5. Identifying the best combining lines.
6. Maintenance of parental self-incompatible lines.
7. Commercial hybrid seed production.
Use of SI lines for hybrid seed production
Maintenance of homozygous SSI inbreds
 Bud pollination / Sibmating
 Treatment with CO2 gas (CO2 enrichment) (Jirik 1985) or sodium
chloride ( Kucera 1990)
Other methods:-
• Electronic aided pollination (EAP); (Roggen et al. 1972)
• Steel brush method ( Roggen and Dijik 1972 )
• The pollen washing ( Roggen 1974)
• Thermally aided pollination (TAP); (Roggen and Dijik 1976)
Assessment and problems in exploiting SSI
Assessment:
 Number of seed set after each specific self- or cross-pollination.
 The fluorescent microscopic observations on pollen ability to penetrate
style (within 12-15 hr) (Dyki 1978).
Problems:
• Sib-incompatibility is weak in certain inbreds.
• Continuous inbreeding may lead to complete loss of the inbred lines.
• Pseudo-incompatibility.
• Hybrid seeds would be expensive if the self-incompatible lines are difficult
to maintain.
Use of CMS for hybrid seed production
F1 Hybrids
Crop F1 Hybrid Genetic Mechanism
Cabbage KGMR-1(Pusa cabbage Hybrid 1),
KTCBH 51, KTCBH 81
SI
Cauliflower Pusa Hybrid-2 (Nov maturing, Group-II),
Pusa Kartik Sankar (group-I)
SI
Cabbage KCH-5, Hybrid 991-5, Hybrid 854-6 CMS
Cauliflower Hybrid 8401 ×31022 CMS
Tropical hybrids
• Most of the high temperature (upto 35◦C) tolerant
tropical hybrids are early maturing like Green
Boy and Green Express.
• Other Hybrids are:
i) From Mahyco: Kalyani, Hri Rani
ii) IAHS Bangalore: Cabbage -5, Cabbage -6,
Bajrang, Sujata, Sucheta, Sarita etc.
iii) Sungro: Sungro – 97, Divya
Conclusion
• Most of the commercial vegetable crops have
narrow genetic base in cultivated species.
• Therefore, in order to broaden their genetic base
wide hybridization following in-vitro and
biotechnological approaches should be use to
generate genetic stocks with useful traits retrieved
from wild relatives which could be employed for
breeding desirable varieties/hybrids.
Future need
• Search for new genes/ new source of resistance to
different biotic and abiotic stresses.
• Introgression of gene(s) of interest for biotic and
abiotic stress mainly in desired commercial
backgrounds using biotechnological approaches.
• Diversification of sterile cytoplasm using wide
hybridization.
Thank You

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RECENT ADVANCES IN IMPROVEMENT OF VEGETABLE CROPS IN INDIA

  • 2. RECENT ADVANCES IN IMPROVEMENT OF VEGETABLE CROPS IN INDIA Credit Seminar II (VSC-692) Presented by:Aditika H-14-33-D PhD IInd year
  • 3. Need for improvement of vegetable crops To develop varieties Higher yield and better quality Photo insensitivity and area of adaptability Resistance to biotic and abiotic stresses Long shelf life and export quality produce Better nutritional, processing quality and seed production
  • 4. Genetic Improvement of vegetable crops Conventional Method Non- Conventional Method Genes for both desirable and undesirable traits Breeders conserve desired ones by repeatedly selection Molecular techniques (selection based on the genotype of marker) Cell and tissue culture technique
  • 5. Breeding methods of vegetable improvement Conventional Methods • Introduction • Pure line selection • Mass selection • Pedigree method • Single seed descent method • Back cross method • Bulk method • Recurrent selection • Heterosis breeding • Synthetic breeding • Clonal Selection etc. Advance Breeding techniques • Mutation breeding • Polyploidy breeding Non conventional methods • Genetic Engineering • Molecular breeding(MAS) • Tissue culture • Somatic hybridization etc.
  • 6. Varieties through introduction in India Crop Introduction Tomato Sioux, Roma, Marglobe, Fire Ball, Best of All, La Bonita, Money Maker Bell pepper California Wonder, Yolo Wonder, World Beater French bean Contender, Kentucky Wonder, Premier Cucumber Poinsette and Japnese Long Green Onion Early Grano, Red Grano, Bermuda Yellow Pea Arkel, Bonneville, Early Badger, Lincoln Cauliflower Snowball-16, Improved Japanese, Early Snowball Cabbage Golden Acre, Drum Head Radish Japanes White, Rapid Red White Tipped, China Red, Red Tail Radish Carrot Nantes, Chanteny Turnip Snowball, Golden Ball, Purple Top White Globe
  • 7. Varieties developed through selection Kalloo G. 1998 Pusa Purple Long, Pusa Purple Round, Pusa Purple Cluster, Pant samrat, Arka Sheel Egg Plant NP 46 A, Sindhur, Patna Red Chilli Hara Madhu, Arka Jeet, Arka Rajhans, MH-1 Muskmelon Pusa Summer Prolific Long, Pusa Summer Prolific Round Bottle Gourd Pusa Red, Pusa Ratnar, Arka Niketan, Arka Pragati Onion Pusa Katki and Pusa Dipali cauliflower Solan Vajar, Solan Lalima, Solan Red Round, Pusa 120, HS-110 Tomato
  • 8. Varieties developed through hybridization Tomato Pusa Ruby, Pusa Gaurav, Pusa Early Dwarf, Arka Meghali, Hissar Anmol, Punjab Chhuhara, Brinjal Pusa Kranti, Hissar Shyamal Muskmelon Pusa Sharbati, Punjab Sunehri Watermelon Arka Manik, Cauliflower Pusa Snowball-1, Pusa Shubra Cabbage Pusa Mukta Carrot Pusa Kesar, Pusa Meghali, Pusa Yamdagini Turnip Pusa Chandrima, Pusa Swarnima, Pusa Kanchan Radish Punjab Safed, Pusa Himani
  • 10. 1. Development of gynoecious lines in cucumber Shogoin(Gynomonoecious,Peter son and Anhder, 1960) Chance Segregant Gynoecious sex form (Stable moderate temp. and photoperiod) Temperate X Monoecious gynoecious (WI2757) Tropical Gynoecious lines(87-304- 6, 87-316, 87-319-12 and 87- 338-15 ) (F1 Phule Prachi, Phule Champa) Parthenocarpic tropical gynoecious line (PKG-1 series) in Poona Khira background (More and Badgujar, 1998)
  • 11. Pusa Seedless Cucumber-6 •First extra early (40-45 days for first fruit harvest) •Parthenocarpic gynoecious cucumber suitable for cultivation in protected condition. •Average fruit yield is 126 t/ha (1260 kg/ 100 m2) during winter season (off-season, November-March).
  • 12. • Polyploid plants are multiples of the basic chromosome number. In vegetable breeding, 1% colchicine solution is used • Colchiploidy is used in Palak and Potato • The well known example of polyploidy is seedless watermelon 4n Seed parent X 2n pollen parent (Tetra-2) (Pusa Rasal) F1 (Pusa Bedana) (Sterile 3n plant) 2. Polyploidy Breeding
  • 13. Continue..  Kerala Agricultural University (KAU), Trichur, Kerala has developed a stable tetraploid line of watermelon ‘KAU-CL- TETRA-1’ through colchiploidy.  Two triploid hybrids i.e. Shonima and Swarna have been developed using this tetraploid line through crossing with diploid males,  namely CL-4 (red fleshed) and CL-5 (Yellow fleshed), respectively. (Vegetable Newsletter,IIVR, 2015) Swarna (Yellow fleshed) Shonima (Red fleshed)
  • 14. 3. Growing vegetables round the year • In Recent past development has been made to develop off-season varieties: Crop Variety Character Tomato Ostenkinskiz, Cold Set, Pusa Sheetal Fruit set at low temperature Hot Set, HS 102, Pusa Hybrid 1 Fruit set at high tempetrature Radish Pusa Chetki, Pusa Desi Made possible to grow throughout year Onion N 53, Agrifound Dark Red, Arka Kalyan, Baswant 780 Kharif season Cabbage Green Express, Green Boy, KK Cross, Pusa Ageti Tolerance to high temperature
  • 15. Varieties of carrot for round the year cultivation Variety Sowing time Availability Yield (q/ha) Pusa Vrishti July-August October-Nov. 180-200 Pusa Meghali August Nov.-Dec. 220 Pusa Rudhira , Pusa Asita, Pusa Vasuda Sep.-Oct. Dec.-Jan. 300-350 Pusa Yamdagini, Pusa Nayanjyoti Sep.-Nov. Dec.-Feb. 270-320 Pusa Yamdagini Dec.-Feb. March-May 200-250 Pusa Yamdagini, Pusa Nayanjyoti, Nantes, Pusa Vrishti March-April June- July 130-150 Indian Horticulture, 2015
  • 16. Pusa Rudhira Pusa Asita Pusa Vrishti Pusa Vasuda
  • 17. 4. F1 Hybrids Crop F1 Hybrid Genetic Mechanism Cabbage KGMR-1(Pusa cabbage Hybrid 1), KTCBH 51, KTCBH 81 SI Cauliflower Pusa Hybrid-2, Pusa Kartik Sankar SI Cabbage KCH-5, Hybrid 991-5, Hybrid 854-6 CMS Cauliflower Hybrid 8401 ×31022 CMS chilli Arka Sweta, Arka Meghna, Arka Harita, Arka Khyati, Kashi Surkh, CH-1, CH-3 CGMS and GMS Onion Arka Kirthiman, Arka Lalima CMS Carrot Pusa Nayanjyoti, Pusa Vasudha CMS Cucumber Solan Khira Hybrid-1, Solan Khira Hybrid-2 Gynoecious based F1 hybrids
  • 18. 5. Edible colour rich varieties of vegetable crops Crop Variety Pigment Carrot Pusa Ashita Anthocyanin Paprika KTPL-19 Capsanthin Amaranthus Pusa Lal Chaulai Anthocyanin Red cabbage Red Cabbage Anthocyanin Purpule headed Broccoli Palam Vichitra Anthocyanin Carrot Pusa Ridhira Lycopene Pusa Vrishti Lycopene Pusa Yamdagini Carotene Pusa Nayanjyoti Carotene Tomato Pusa Rohini Lycopene Pritam Kalia , 2012
  • 19. 6. Cauliflower : Pusa Betakesari •This is the first ever indigenously bred bio-fortified beta carotene (800 – 1000 µg/100 g) rich cauliflower variety, an attempt to tackle beta carotene deficiency related malnutrition problem in India •Its curds are orange coloured, compact and very attractive •It is suitable for September – January growing period
  • 20. Resistance breeding Need??? Vegetables Biotic Stresses Residual effect Health Hazards, reduced export potential Resistance breeding Dr. G. Kalloo, Vegetable breeding
  • 21. Vegetable varieties resistant to diseases in India Crop Disease Variety Eggplant Bacterial wilt Pant Rituraj Pusa Purple Cluster Bacterial wilt and Phomopsis blight Pant Samrat Pusa Bhairav Tomato Bacterial wilt BWR-5 Verticilium wilt and Fusarium wilt Pant Bahar Root Knot Nematodes Sel-120 PNR-7 Leaf curl H-24, H-36 Yashwant Capsicum Bacterial wilt Arka Gaurav Phytophthora rot Solan Bharpur (Tolerant) Chilli Multiple disease resistant (Anthracnose, leaf curl, TMV, CMV) Punjab Lal
  • 22. Continue.. Crop Disease(s) Variety Okra YVMV Arka Anamika Arka Abhay Parbhani Kranti Watermelon Anthracnose, PM and DM Arka Manik Muskmelon Powdery mildew Arka Rajhans PM and DM Punjab Rasila Cabbage Black rot Pusa Mukta Cauliflower Black rot Pusa Shubra Pusa Snowball K-1 Pea Powdery mildew FC-1 JP-83 PRS-4 and PM-2 Powdery mildew and rust Mithi Phali Solan Nirog JP-4 French bean Angular leaf spot SVM-1
  • 23. Varieties resistant to abiotic stresses in India Crop Stress Variety Tomato Low temperature Pusa Sheetal Drought Solan Vajr, Arka Meghali High temperature HS-101, HS-102 and Pusa Hybrid 1 Salinity Pusa Ruby Onion Salinity Hisar-2
  • 24. Conventional breeding increasing population, decline in agricultural resources such as land and water, and the apparent plateauing of the yield curve of the staple crops Modern Plant breeding is a multi- disciplinary and coordinated approach Number of tools and elements of conventional breeding techniques, bioinformatics, biochemistry, molecular genetics, molecular biology and genetic engineering, utilized and integrated
  • 25. Biotechnology as a tool for vegetable improvement
  • 26. Transgenics or GM Crops Genetic diversity studies Evolutionary studies Anther culture Embriyo Culture Protoplast Fussion Molecular mapping To prepare saturated genetic map Chromosome identification Micro Propagation Meristem Culture Marker Assisted Selection QTLs Disease resistance Construction of genetic maps Biotechnology for vegetable improvement Genetic Engineering Molecular Markers Tissue Culture
  • 27. Genetic Engineering • Deliberate alteration of genome of an organism by introducing one or few specific foreign genes • GE crops are Transgenic crops or Genetically modified (GM) crops and the gene introduced is referred as transgene • Creation of transgenic plants require tools of biotechnology and those of conventional breeding • GE supplements but not supplants breeding
  • 28.
  • 29. Genetically modified Horticultural crops under large scale production Crop Transgenic trait Transgene Tomato Suppression of PG (Polygalactronase) to delay fruit ripening Antiscense construct based on pTOM6 for polygalactronase enzyme Squash (Zucchini) Resistant to watermelon, cucumber, and zucchini yellow mosaic viruses Virus coat protein Sweet pepper Resistance to viruses Virus coat protein Sugar beet Resistant to glyphosate herbicide - Soyabean Resistant to glyphosate herbicide Glyphosate resistant bacterial EPSPS gene, bar gene Bhojwani SS and Dantu PK. 2013
  • 30. Application of GM crops Resistance to biotic stresses • Disease resistance • Insect Resistance Resistance to abiotic Stresses • Drought resistance • Salt resistance • Heavy metal resistance • `Cold tolerance • Frost tolerance • Resistance to herbicides • Induction of engineering male sterility • Nutritional quality improvement
  • 31. Resistance to biotic stress Crop Trait Gene/ lines resistance Cabbage DBM Cry 1A Tomato Early Blight (Arka Vikas) Trichoderma hazarianum chitinase gene Late Blight PGIP gene Potato ToLCNDV GTLC2-127 and KPLC2-53 lines Watermelon Bud Necrosis Transgenic watermelon cv. Arka Manik IIHR and CPRI annual reports, 2015
  • 32. Abiotic stresses resistance Drought tolerance in tomato: • A novel gene likely to confer drought tolerance, cloned from a drought tolerant land race of sorghum M-35-1, was used for transformation of tomato. Average number of fruits and average yield per plant was higher than control varieties. • In Network Project on Transgenic Crops at IIVR (NPTC), water-deficit stress tolerant transgenic tomato was developed using AtDREB1A gene. • Another BcZAT12 transformed tomato line was useful for improving its quality in heat, drought or salt stressed conditions. Source Annual report IIVR 2012-13 and 2013-14
  • 33. Salt stress tolerant transgenic tomato cv. Kashi Vishesh - AtDREB1A gene The salt stress exposed transgenic tomato plants recorded : I. higher relative water content, II. lower membrane damage indicated by lower electrolyte leakage and lipid peroxidation (MDA) compared to the non-transgenic (WT) plants. • Over-expression of rd29A:AtDREB1A/ CBF3 imparted lower susceptibility to salt stress. IIVR Annual Report 2014-15
  • 34. Marker Assisted Selections • MAS refers to the use of DNA markers that are tightly-linked to target loci as a substitute for or to assist phenotypic screening. • Marker-assisted selection (MAS) provided a potential for increasing selection efficiency by allowing for earlier selection and reducing plant population size used during selection
  • 35. Genome Sequencing How next generation sequencing helps crop improvement:  To develop millions of novel markers, as well as the identification of agronomically important genes (Edwards & Batley 2010)  Enabled the development of high-density genetic maps  The sequence data obtained will help to identify the genes determining different traits  These data enable the unravelling of the regulatory mechanisms behind different traits, and help to elucidate the complete pathway
  • 36. Sequenced crop Genome S. N. Crop Haplod chr. no. Estimated genome size (Mb) No. of gene prediction References 1 Cucumber 7 367.00 26,682 Huang et al. (2009) 2 Musk melon 12 450.00 27,427 Gonzalez et al. (2010) 3 Potato 12 844.00 39,031 The potato genome sequencing consortium (2011) 4 Chinese cabbage 10 529.00 41,174 The Brassica rapa genome Sequencing project consortium (2011) 5 Tomato 12 900.00 34,727 The tomato genome consortium (2012) 6 Water melon 11 425.00 23,440 Gau et al. (2013) 7 Brinjal 12 1126.00 85,446 Hirakawa et al. (2014) 8 French bean 11 587.00 27,197 Schmutz et al. (2014) 9 Chilli 12 3480.00 34,903 Kim et al. (2014) 10 Cabbage 9 630.00 45,758 Liu et ai. (2014)
  • 37. Limitations and future directions of genome sequencing Limitations:  large genome size  polyploidy exhibited by many vegetable crop species impedes the sequencing and further analysis  A high percentage of repeat elements is also a major hurdle in genome assembly  Another challenge is that the functions of many genes identified by genome sequencing remain unknown and the genetic control of the majority of agronomic traits has yet to be determined Future directions  Systematic mining and utilisation of these data would help to develop varieties with higher yield and tolerance to biotic as well as abiotic stresses, and would boost up the economy of tropical countries like INDIA .
  • 38. Other techniques Technique Application Meristem and bud culture Micropropagation for commercial purposes, genetic conservation, and exchange of material Zygotic embryo culture Interspecific crosses Anther and microspore culture Haploid production Protoplast culture Fusion for somatic hybridization
  • 39. Advances in improvement of bulbous crops
  • 40. Breeding achievements and challanges  Continuous cultivation, acclimatization and selection by farmers and researchers have converted onion from long day crop to short day under Indian conditions  Although huge genetic diversity is available in bulb onion, crop improvement progress is not at the pace of other crops (McCallum 2007, Varshney et al. 2012)  Systematic breeding was started with mass selection in various countries during the 19th century, and the discovery of cytoplasmic male sterility paved the way for development of F1 hybrids in the middle of 20th century (Brewster 2008, McCallum et al. 2008).  Sen and Srivastava (1957) attempted to develop F1 hybrids in onion as early as in 1948 using exotic male sterile lines and Indian local male stocks.  The exotic male sterile lines were found unsuitable in the photo periodically different environment in India.  At IARI, the male sterility was isolated in a commercial variety ‘Pusa Red’
  • 41. Continue… Till today in India Arka Kirthiman (MS-65 x Sel.13-1-1) and Arka Lalima (MS-48 x Sel.14- 1-1) two F1 has developed using cytoplsmic genotypes. F1 hybrids dominate in many countries in the world but in India OP varieties dominate
  • 42. Continue.. Germplasm: Major gene bank of onion in the world Khosa et al. 2016
  • 43. Marker Assisted breeding  Molecular markers can be used in onion for germplasm characterization and identification of cytoplasmic male sterility in onion for development of hybrids  Male sterile and maintainer lines were identified using molecular markers in three long day onion populations. Molecular markers, 5’cob and orfA501 were able to distinguish effectively normal (N) and sterile (S) cytoplasm in all the three populations (Saini et al. 2015)  An identified molecular marker orf 725 is used to distinguish male sterile and maintainer genotypes maintained at Indian Institute of Horticultural Research Station, Hesaraghatta, Bangalore (Karnataka), India. (Dhanya et al. 2014)
  • 44. Haploid breeding • High heterozygosity in inbred lines resulting from limited (2 or 3) cycle of self-pollination is a major bottleneck in heterosis breeding in onion. • And being biennial in nature require almost 10 years to develop an inbred through conventional method. • DH provides complete homozygosity and phenotypic uniformity. • DH hybrids tested were superior for mean row weight and mean bulb weight creates a pool of experimental hybrids to allow further selection of those hybrids with the preferred quality characteristics. The DH line CUDH066631 performed better than all others (Hyde et al. 2012) • Work is at its embryonic stage in India and is being done at IIHR Bangalore and NHRDF Nashik as well as DOGR Pune .
  • 45. Garlic • The lack of sexuality in garlic limits the increase of variability that is useful for breeding for economically important traits, such as tolerance to biotic and abiotic stress, earliness, yield and quality. Disadvantages of vegetative propagation: a) low multiplication rate, b) expensive and short-term storage that requires wide spaces, c) transmission of phytopathogens through generations • Biotechnological tools such as plant tissue culture can help overcome problems associated with vegetative propagation of garlic, specially the low multiplication rate and disease dispersion
  • 46. Micropropagation • Improved micro propagation protocol for garlic can be utilized for propagation of elite genotype at commercial- scale as one single bulb can give rise to approx. 1200 bulblets (Dixit et al. 2013).
  • 47. Recent advances in improvement of Solanaceous Vegetable crops
  • 48. Challenges for improvement • Resistance to biotic Stresses • Resistance to abiotic stresses
  • 49. Biotic stresses and their source of resistance in tomato Biotic Stress Resistance Sources Tomato Leaf Curl Virus (ToLCV) L. hirsutum f. glabratum, L. peruvianum, L pimpinellifolium and L. hirsutum, HS 101, L. hirsutum (LA386, LA 1777, PI 390513), L. glandulosum (EC 68003) and L. peruvianum (PI 127830 and PI 127831), H-88-78-1, H-88-78-2, H-88-87 Fusarium Wilt L. hirsutum f. glabratum (Wir 4172), L. hirsutum (PI 13448) and L. peruvianum (EC 148898), Columbia, Roma, HS 110, Fla. 7547, Fla. 7481 Early Blight L. hirsutum (PI 134437), P-1, EC 529061, WIR-3928, H-88-28-1, H- 86-11 and H86-7 Bacterial wilt Lycopersicon pimpinellifolium, Acc 99, Sweet 72, Acc 151, Hyb 54, IIHR 663-12-3, BWR 1, BWR 5, LE 79 BT 1, BT-10, H 24, BRH-2, LE-415, H-86, Capitan, Caravel, Ga. 1565, Ga 219, CRA 66 Fruit Borer L. hirsutum f. glabratum White fly L. hirsutum and L. hirsutum f. glabratum
  • 50. Biotic Stresses and their Source of Resistance in Brinjal Biotic Stress Resistance Sources Bacterial wilt West coast Green Round 112-8 (WCGR 128-8), S. melongena var. incanum, S. integrifolium, S. torvum Little leaf Solanum viarum, S. incanum, S. sisymbrifolium, Pusa Purple Cluster, Katrai Phomopsis blight S. xanthocarpum, S. sisymbrifolium, S. indicum, S. khasianum, S. nigram, S. gilo, Florida Market, Florida Beauty, BPL-1, Ornamental brinjal, Pusa Uttam, IC-316237 RKN Solanum sisymbrifolium, Co-1, Solanum torvum Shoot and fruit borer Solanum sisymbrifolium, S. integrifolium, S. xanthoranpum, S. nigrum, S. khasianum, Pusa Purple Long, H-128, H-129, Azcabey, Thorn Pendy, Black Pendy, Banaras Long Purple.
  • 51.
  • 52. Molecular markers linked to biotic stresses Crop Trait Marker Reference Tomato Fusarium wilt (race 1) SSR (TOM-144) linked to fusarium wilt Parmar et al. (2013) Tomato yellow leaf curl virus STS linked to Ty2 gene Mohamed et al. (2012) RFLP linked to Ty1 Zamir et al.(1994) RKN RAPD linked to Mi gene Williomson et al. (1994) ToMV SCAR based linked to Tm1 Ishibashi et al. (2007) Late blight (dTG63) CAPS linked to Ph2 Panthee et al. (2012) Pepper Tomato spotted wilt virus RAPD linked to Tsw Jahn et al. (2000) Potato PLRV Nl271164 (SCAR) linked to Plrv.1 (QTL) Marczewski et al. (2001) PVY RYSC3321 linked to Ryadg (CAPS) Kasai et al. (2000)
  • 53. Multiple disease resistance in tomato • Hybrid-369 with triple disease resistance (ToLCV+BW+EB) • Marker Assisted Selection (MAS) was employed for pyramiding of Ty-2 and Ty- 3 genes into elite tomato lines • Pre-breeding was carried out for introgression of ToLCV resistant genes from Solanum habrochaites. IIHR Annual Report, 2014-15
  • 54. Arka Rakshak: High yielding triple disease resistant tomato F1 hybrid with export potential Breeding line X Breeding Line (IIHR Banglore) (AVRDC Tiwan) Arka Rakshak (ToLCV + BW + EB )  Fruits are medium to large size (80-100g), deep red, very firm with good keeping quality (15-20 days) and long transportability  Bred for both fresh market and processing  Suitable for summer, Kharif and Rabi seasons  Yields 90-100 tons per hectare in 140-150days
  • 55. Molecular markers linked to Male sterility Crop Marker Reference Tomato C4-30 and C2-21 (CAPS) linked to Ps and ps 2 (functional male sterile gene) Staniaszek et al. (2012) Chilli RAPD to linked to Rf gene Kumar et al. (2002)
  • 56. Recent advances in improvement of cucurbits
  • 57. Registered germplasm of cucurbits having some unique trait Cucurbit Line National Germplasm No Registered trait Pointed gourd IIVR PG-105 INGR-03035 Parthenocarpic fruits Bitter gourd GY-63 INGR-03037 Gynoecious sex with high yield Watermelon RW-187-2 INGR-01037 High yield and yellow coloured flesh RW-177-2 INGR-01038 Leaf mutant with simple unlobed leaves PBOG-54 INGR-99022 Segmented leaves Cucumber AHC-2 INGR-98017 High yield and long fruit AHC-13 INGR-98018 Small fruit, drought and temperature tolerant Roundmelon HT-10 INGR-99038 Tolerant to downy mildew and root rot wilt Snapmelon AHS-10 INGR-98015 High yield and drought tolerance Rai et al. 2008
  • 58. Gynoecy in bitter gourd (Momordica charantia) for exploiting hybrid vigour  The monoecious bitter gourd accessions produce staminate flowers from the start of reproductive phase till crop maturity and thus the staminate to pistillate flower sex ratio in this sex type is relatively high (9:1 to 48:1; 3).  Moreover, it creates difficulty during commercial hybrid seed production due to its extremely small flower.  Use of gynoecious line is an alternative to reduce the cost of hybrid seed production.  Two gynoecious lines (DBGy 201 and DBGy 202) lines have been developed from natural population at IARI (Behera et al. 2006)  The gynoecious hybrid DBGY-201 × Pusa Vishesh showed highest heterosis (-19 %) for earliness and the hybrid DBGY- 201 × Priya was reported to provide maximum heterosis for fruit length, weight and yield. (Dey et al. 2008)
  • 59. Male Sterility in musk melon In India, male-sterile gene ms-1 was introduced in 1978 and used to release two commercial cultivars Punjab Hybrid (Nandpuri et al. 1982) and Punjab Anmol (Lal et al. 2007). This was the first evidence of exploitation of ms-1 gene for heterosis breeding in melon. Due to the instability of this ms-1 gene in our sub- tropical field conditions, the seed production of these hybrids has posed numerous problems consistently (Dhatt and Gill 2000).
  • 60. New source of cytoplasmic genic male sterility (CGMS) and restoration of fertility gene in ridge gourd  Two dominant fertility restorer genes (Rf1 and Rf2) either in homozygous dominant or heterozygous dominant condition restores the male fertility in presence of sterile cytoplasm (Arka Sumeet)  This is the first report of cytoplasmically controlled male sterility (CMS) in cucurbits where two dominant male fertility restorer nuclear genes with complementary gene action governed the restoration of male fertility (Kannan et al. 2014)
  • 61. Resistance Breeding Crop Disease Resistance Source Musk melon Powdery mildew PMR 45, PMR 450, PMR 5, PMR 6, PI 124111 Downey mildew MR-1, PI 414723, DMDR-1, DMDR-2 CGMMV DVRM-1, 2, C. africanus, C. ficifolius, C. anguria Fruit fly C. callosus Nematodes C. metuliferus Watermelon Fusarium wilt Summit, Conqueror, Charleston Gray, Dixilee, Crimson Sweet Anthracnose Fair, Charleston gray, Congo, PI 189225 Cucumber Anthracnose PI 175111, PI 175120, PI 179676, PI 182445, wise 2757 (USA) Downey mildew B-184, B159, wise 2757 (USA) Powdery mildew PI 200815, PI 200818, C.hardwikkii, Wise 2757 (USA) CMV Wisc SMR-12, SMR-15, SMR-18, wise 2757 (USA) PM and Viruses C. lundelliana, C. martenezii ZYMV, WMV C. ecuadorensis, C. faetidistima, C. martenezii Rai et al. (2008)
  • 62. Continue .. A total of four QTLs (pm1.1, pm2.1, pm4.1 and pm6.1) for PM resistance were identified and located on LG 1, 2, 4 and 6, respectively, explaining 5.2%-21.0% of the phenotypic variation. Anchor markers tightly linked to those loci (<5 cM) could lay a basis for both molecular marker- assisted breeding of the PM-resistance gene in cucumber (Zhou et al. 2008)
  • 63. Recent advances in improvement of cole crops
  • 64. F1 hybrids F1 hybrids better to OP Varieties: • Earliness • High early and total yield, • Better curd/head quality in respect of curd/head compactness and colour • Uniform maturity • Better field staying capacity • Wider adaptability • Resistance to disease and insect
  • 65. Exploitation of heterosis Genetic mechanisms : SI: Self-incompatibility is genetically controlled, physiological hindrance to self- fruitfulness or self-fertilization. (SSI- Cole Crops) MS: Male sterility refers to either absence of pollen grain or if present it is non-functional (CMS, GMS, GEMS)
  • 66. Basic steps in use of SSI 1. Identification of self-incompatible plants in diverse population/genotypes. 2. Development of homozygous self-incompatible lines. 3. Identification of S-alleles in the homozygous self-incompatible lines. 4. Establishment of inter-allelic relationships among the S-alleles. 5. Identifying the best combining lines. 6. Maintenance of parental self-incompatible lines. 7. Commercial hybrid seed production.
  • 67. Use of SI lines for hybrid seed production
  • 68. Maintenance of homozygous SSI inbreds  Bud pollination / Sibmating  Treatment with CO2 gas (CO2 enrichment) (Jirik 1985) or sodium chloride ( Kucera 1990) Other methods:- • Electronic aided pollination (EAP); (Roggen et al. 1972) • Steel brush method ( Roggen and Dijik 1972 ) • The pollen washing ( Roggen 1974) • Thermally aided pollination (TAP); (Roggen and Dijik 1976)
  • 69. Assessment and problems in exploiting SSI Assessment:  Number of seed set after each specific self- or cross-pollination.  The fluorescent microscopic observations on pollen ability to penetrate style (within 12-15 hr) (Dyki 1978). Problems: • Sib-incompatibility is weak in certain inbreds. • Continuous inbreeding may lead to complete loss of the inbred lines. • Pseudo-incompatibility. • Hybrid seeds would be expensive if the self-incompatible lines are difficult to maintain.
  • 70. Use of CMS for hybrid seed production
  • 71. F1 Hybrids Crop F1 Hybrid Genetic Mechanism Cabbage KGMR-1(Pusa cabbage Hybrid 1), KTCBH 51, KTCBH 81 SI Cauliflower Pusa Hybrid-2 (Nov maturing, Group-II), Pusa Kartik Sankar (group-I) SI Cabbage KCH-5, Hybrid 991-5, Hybrid 854-6 CMS Cauliflower Hybrid 8401 ×31022 CMS
  • 72. Tropical hybrids • Most of the high temperature (upto 35◦C) tolerant tropical hybrids are early maturing like Green Boy and Green Express. • Other Hybrids are: i) From Mahyco: Kalyani, Hri Rani ii) IAHS Bangalore: Cabbage -5, Cabbage -6, Bajrang, Sujata, Sucheta, Sarita etc. iii) Sungro: Sungro – 97, Divya
  • 73. Conclusion • Most of the commercial vegetable crops have narrow genetic base in cultivated species. • Therefore, in order to broaden their genetic base wide hybridization following in-vitro and biotechnological approaches should be use to generate genetic stocks with useful traits retrieved from wild relatives which could be employed for breeding desirable varieties/hybrids.
  • 74. Future need • Search for new genes/ new source of resistance to different biotic and abiotic stresses. • Introgression of gene(s) of interest for biotic and abiotic stress mainly in desired commercial backgrounds using biotechnological approaches. • Diversification of sterile cytoplasm using wide hybridization.

Notas del editor

  1. Compadium 2013
  2. Among these varieties most of them are still ruling and covering very large area in the country
  3. Gynoecious sex form was spotted out as a chance segregate from a Korean gynomonoecious introduction ‘Shogoin’ (PI 220860) (Peterson and Anhder, 1960) were found to be stable, under moderate regimes of temperature and photoperiodic conditions. But when the temperature exceeded beyond 30° C - the stability of gynoecious sex expression was affected (Cantliffe, 1981; More and Munger, 1987). Evidently, the stability of gynoecious sex expression in cucumber is related to thermo-specific response. four stable tropical gynoecious lines viz., 87-304-6, 87-316, 87-319-12 and 87-338-15 were established, These stocks were developed from the crosses involving temperate gynoecious lines like WI 2757, SR 551F, Tablegreen 68 and SC3 of USA origin and Indian origin monoecious parent. Parthenocarpic tropical gynoecious cucumber lines (PKG-1 series) in Poona Khira background (More and Badgujar, 1998).
  4. During the recent past, progress has been made in development of off-season varieties in radish, tomato, onion and cabbage. This has resulted to the cultivation of these crops in most parts of the year. ' , Radish can be grown round the year with the development of 'Pusa Chetki' and 'Pusa Desi' varieties. In tomato varieties tolerant to heat and cold were developed. 'Ostenkinskiz', 'Cdld Set', 'Pusa Sheetal' and 'Severinanin‘can set fruits at low temperature. Similarly, 'Hot Set', 'HS 102' and 'Saladette' can set fruit under high temperature conditions (Kalloo 1995).
  5. CB can no longer sustain the global demand: with the increasing population, decline in agricultural resources such as land and water, and the apparent plateauing of the yield curve of the staple crops Modern plant breeding is a multi-disciplinary and coordinated process where a large number of tools and elements of conventional breeding techniques, bioinformatics, biochemistry, molecular genetics, molecular biology and genetic engineering are utilized and integrated
  6. The concept of DNA-based markers has revolutionized our ability to follow chromosome segments, including minute regions Genetic markers-heritable entities that are associated with economically important traits, can be used by plant breeders as selection tools
  7. Impact of genomics on plant breeding is The development of a system breeding approach, which integrates gene function information and regulatory networks to predict and estimate the contributions of genetic variations to phenotypes and field performance (Bevan & Uauy 2013).
  8. Et al italic
  9. The advancement in sequencing technology has revolutionised the field of genetics, enabling the mass sequencing of genomes and transcriptomes. Taking advantage of the new technologies, many crop genomes have been sequenced. However, this research is still in its embryonic stage. Many crop genome assemblies are still in the draft stage. A high percentage of repeats in many plant genomes makes it difficult to assemble the short reads from the NGS platforms large genome size polyploidy exhibited by many crop species impedes the sequencing and further analysis. A high percentage of repeat elements is also a major hurdle in genome assembly. However, a platform has been established for many important crops and further
  10. Et al. Acc. No. Italian Red :13-53
  11. Kirthi mqn Less popularity for F1 hybrids in onion is due to : Insufficient demonstrable superiority of hybrids Expensive seed production Absence of the Nmsms genotype Instability of male sterility Under development in breeding technology
  12. Unfortunatley, most of these resources have not been characterized or utilized for insect resistance breeding, though a few inheritance studies have been undertaken. Breeding for insect resistance in tomato has generally encountered more difficulties than breeding for disease resistance, linkage drag being a major impediment. It is expected that identification of markers associated with insect resistance and use of MAS will help alleviate some of the difficulties in developing insect resistant cultivars.
  13. Cucurbits prone to lots of biotic stresses although there are many varieties which has been resistance to these but with the emergence of new races of pathogene and biotypes in insects there is an urgent need to use molecular markers to identify QTLS and their use in MAS and introgression of the genes from wild sources through mm. (GM)