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ChemSpider – The Vision and Challenges Associated with Building a Free Online Community Resource for Chemists
1.
ChemSpider – The
Vision and Challenges Associated with Building a Free Online Community Resource for Chemists Antony Williams AZ, February 2011
2.
3.
For Synthesis…TotallySynthetic.com
4.
Org Prep Daily
(Blog)
5.
Molbank (Open Access
Journal)
6.
7.
Where Would You
look? What Do You Trust?
8.
Linked Data on
the Web
9.
What is a
compound? “ARTAs”
10.
11.
12.
13.
14.
www.chemspider.com
15.
16.
Search for a
Chemical…by name
17.
18.
19.
Available Information….
20.
Clickthrough to Patent
(SureChem)
21.
22.
23.
Spectra Linked
24.
Spectra Linked
25.
Search for a
chemical…by structure Substructure search coming…
26.
27.
What is the
Structure of Vitamin K?
28.
29.
What is the
Structure of Vitamin K1?
30.
What is the
Structure of Vitamin K1?
31.
Vitamin K1
32.
33.
34.
Question Everything online:
www.dhmo.org
35.
It’s all on
Wikipedia…
36.
Chemistry on The
Internet Is Messy
37.
It’s Methane…
38.
What’s Methane?
39.
What’s Methane?
40.
What ELSE
is Methane???
41.
42.
43.
EPA’s DailyMed
44.
EPA’s DailyMed
45.
EPA’s DailyMed
46.
47.
Drug Name Generic
Name ChEBI ChemSpider CAS Com. Chem ChemIDPlus DailyMed DrugBank PubChem Wikipedia Spiriva Tiotropium Bromide No Hits No Hits 4/0 Depakote Valproate semisodium No Structure Basen Voglibose No Hits No Hits 2/1 Symbicort 1) Budesonide 8/1 Symbicort 2) Formoterol WRONG No Hits 6/1 Vytorin 1) Ezetimibe No Hits Vytorin 2) Simvastatin 2/1 Taxol Paclitaxel 44/1 Thalidomid Thalidomide No Hits Zocor Simvastatin 2/1 Crestor Rosuvastatin No Hits 2/1
48.
Symbicort: Budesonide +
Formoterol
49.
Symbicort: Budesonide +
Formoterol ChemIDPlus Wikipedia
50.
DrugBank: Search Symbicort…
51.
52.
Taxol: Paclitaxel
44 structures
53.
Taxol: Paclitaxel
Bioassay Data
54.
55.
56.
57.
58.
59.
60.
The Final Search
Strategy
61.
All Those Names,
One Structure
62.
63.
The InChI Identifier
64.
Multiple Layers
65.
InChIStrings Hash to
InChIKeys
66.
Oleoylethanolamine
67.
InChIs have traction…
68.
Vancomycin
69.
Vancomycin
70.
Vancomycin Search Molecular
SKELETON Search Full Molecule
71.
Full Molecule
Search: 4 Hits
72.
Full Skeleton
Search: 104 Hits
73.
74.
Vancomycin on ChemSpider
75.
76.
77.
78.
79.
80.
81.
Name Searching is
“Easier”
82.
Name Searching is
“Easier”
83.
84.
85.
86.
The EXPERTS must
get it right?!
87.
88.
89.
90.
Search OEA
91.
Search OEA
92.
Search OEA
93.
94.
Nature Chemistry Compound
Pages
95.
Project Prospect
96.
Entity-Extraction, Mark-up, Annotate
97.
Entity-Extraction, Mark-up, Annotate
98.
And linked to
STITCH…
99.
Success Depends on
Dictionaries
100.
101.
Search “Vitamin H”
102.
“ Curate” Identifiers
103.
“ Curate” Identifiers
104.
“ Curate” Identifiers
105.
Crowd-sourcing Chemistry Curation
106.
107.
108.
Crowdsourcing Synthesis ChemSpider
SyntheticPages
109.
Crowdsourcing Synthesis ChemSpider
SyntheticPages
110.
111.
Web Services
112.
113.
ChemSpider Everywhere :
Embed
114.
ChemSpider Everywhere: Spectral
Game
115.
ChemSpider Everywhere Crowdsourced
Curation of Spectra
116.
ChemSpider Everywhere :
ChemMobi
117.
Structure Database Lookup
118.
Structure Database Lookup
119.
Reaction Database Look-up
120.
Reaction Database Look-up
121.
122.
123.
124.
125.
It’s a long
road ahead…
126.
Thank you Email:
williamsa@rsc.org Twitter: ChemConnector Personal Blog: www.chemconnector.com SLIDES: www.slideshare.net/AntonyWilliams
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