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“Creating a Big Data
Machine Learning Platform in California”
Big Data Tech Forum:
Big Data Enabling Technologies and Applications
San Diego Chinese American Science and Engineering Association (SDCASEA)
Sanford Consortium
La Jolla, CA
December 2, 2017
Dr. Larry Smarr
Director, California Institute for Telecommunications and Information Technology
Harry E. Gruber Professor,
Dept. of Computer Science and Engineering
Jacobs School of Engineering, UCSD
http://lsmarr.calit2.net
1
Vision:
Use Optical Fiber to Connect
Big Data Generators and Consumers,
Creating a “Big Data” Freeway System
“The Bisection Bandwidth of a Cluster Interconnect,
but Deployed on a 20-Campus Scale.”
This Vision Has Been Building for 15 Years
We Have Been Working Towards Distributed Big Data for 15 Years:
NSF OptIPuter, Quartzite, Prism Awards
PI Papadopoulos,
2013-2015
PI Smarr,
2002-2009
PI Papadopoulos,
2004-2007
Based on Community Input and on ESnet’s Science DMZ Concept,
NSF Has Funded Over 100 Campuses to Build Local Big Data Freeways
Red 2012 CC-NIE Awardees
Yellow 2013 CC-NIE Awardees
Green 2014 CC*IIE Awardees
Blue 2015 CC*DNI Awardees
Purple Multiple Time Awardees
Source: NSF
Terminating the Fiber Optics - Data Transfer Nodes (DTNs):
Flash I/O Network Appliances (FIONAs)
UCSD Designed FIONAs
To Solve the Disk-to-Disk
Data Transfer Problem
For Big Data
at Full Speed
on 10G, 40G and 100G Networks
FIONAS—10/40G, $8,000
FIONette—1G, $1,000
Phil Papadopoulos, SDSC &
Tom DeFanti, Joe Keefe & John Graham, Calit2
John Graham, Calit2
How UCSD DMZ Network Transforms Big Data Microbiome Science:
Preparing for Knight/Smarr 1 Million Core-Hour Analysis
Knight Lab
FIONA
10Gbps
Gordon
Prism@UCSD
Data Oasis
7.5PB,
200GB/s
Knight 1024 Cluster
In SDSC Co-Lo
CHERuB
100Gbps
Emperor & Other Vis Tools
64Mpixel Data Analysis Wall
120Gbps
40Gbps
1.3Tbps
(GDC)
Logical Next Step: The Pacific Research Platform Creates
a Regional End-to-End Science-Driven “Big Data Superhighway” System
NSF CC*DNI Grant
$5M 10/2015-10/2020
PI: Larry Smarr, UC San Diego; Calit2
Co-PIs:
• Camille Crittenden, UC Berkeley CITRIS,
• Tom DeFanti, UC San Diego Calit2,
• Philip Papadopoulos, UCSD SDSC,
• Frank Wuerthwein, UCSD Physics and SDSC
Letters of Commitment from:
• 50 Researchers from 15 Campuses
• 32 IT/Network Organization Leaders
We Measure Disk-to-Disk Throughput with 10GB File Transfer
4 Times Per Day in Both Directions for All PRP Sites
January 29, 2016
From Start of Monitoring 12 DTNs
to 24 DTNs Connected at 10-40G
in 1 ½ Years
July 21, 2017
Source: John Graham, Calit2
PRP’s First 2 Years:
Connecting Multi-Campus Application Teams and Devices
Data Transfer Rates From UCSD Physics Building Servers
Across Campus and Then To Chicago’s Fermilab
Utilizing UCSD Prism Campus
Optical Network
Source: Frank Wuerthwein, UCSD, SDSC
100 Gbps FIONA at UCSC Allows for Downloads to the UCSC Hyades Cluster
from the LBNL NERSC Supercomputer for DESI Science Analysis
300 images per night.
100MB per raw image
30GB per night
120GB per night
250 images per night.
530MB per raw image
150 GB per night
800GB per night
Source: Peter Nugent, LBNL
Professor of Astronomy, UC Berkeley
Precursors to
LSST and NCSA
NSF-Funded Cyberengineer
Shaw Dong @UCSC
Receiving FIONA
Feb 7, 2017
Cancer Genomics Hub (UCSC) Was Housed in SDSC, But NIH Moved Dataset
From SDSC to Uchicago - So the PRP Deployed a FIONA to Chicago’s MREN
1G
8G
Data Source: David Haussler,
Brad Smith, UCSC
15G
Jan 2016
40G FIONAs
20x40G PRP-connected
WAVE@UC San Diego
PRP Now Enables
Distributed Virtual Reality
PRP
WAVE @UC Merced
Transferring 5 CAVEcam Images from UCSD to UC Merced:
2 Gigabytes now takes 2 Seconds (8 Gb/sec)
Five Examples of Earth Sciences Research Teams
That Are in the Early Stages of Using PRP
Frank Vernon - Expansion of HPWREN
Dan Cayan, Mike Dettinger
Regional Downscaling of Climate Models
Scott Sellars, Marty Ralph
Center for Western Weather and Water Extremes
John Delaney-
Undersea Cabled Observatory
Jules Jaffe,
Ocean Microscope
Director: F. Martin Ralph Website: cw3e.ucsd.edu
Big Data Collaboration with:
Source: Scott Sellers, CW3E
Collaboration on Atmospheric Water in the West
Between UC San Diego and UC Irvine
Director, Soroosh Sorooshian, UCSD Website http://chrs.web.uci.edu
Calit2’s FIONA
SDSC’s COMET
Calit2’s FIONA
Pacific Research Platform (10-100 Gb/s)
GPUsGPUs
Complete workflow time: 20 days20 hrs20 Minutes!
UC, Irvine UC, San Diego
Major Speedup in Scientific Work Flow
Using the PRP
Source: Scott Sellers, CW3E
Jaffe Lab (SIO) Scripps Plankton Camera
Off the SIO Pier with Fiber Optic Network
Over 300 Million Images So Far!
Requires Machine Learning for Automated Image Analysis and Classification
Phytoplankton: Diatoms
Zooplankton: Copepods
Zooplankton: Larvaceans
Source: Jules Jaffe, SIO
”We are using the FIONAs for image processing...
this includes doing Particle Tracking Velocimetry
that is very computationally intense.”-Jules Jaffe
New NSF CHASE-CI Grant Creates a Community Cyberinfrastructure
Adding a Machine Learning Layer Built on Top of the Pacific Research Platform
Caltech
UCB
UCI UCR
UCSD
UCSC
Stanford
MSU
UCM
SDSU
NSF Grant for High Speed “Cloud” of 256 GPUs
For 30 ML Faculty & Their Students at 10 Campuses
for Training AI Algorithms on Big Data
Adding GPUs to FIONAs
Supports Data Science Machine Learning
Multi-Tenant Containerized GPU JupyterHub
Running Kubernetes / CoreOS
Eight Nvidia GTX-1080 Ti GPUs
~$13K
32GB RAM, 3TB SSD, 40G & Dual 10G ports
Source: John Graham, Calit2
48 GPUs for
OSG Applications
UCSD Adding >350 Game GPUs to Data Sciences Cyberinfrastructure -
Devoted to Data Analytics and Machine Learning
SunCAVE 70 GPUs
WAVE + Vroom 48 GPUs
FIONA with
8-Game GPUs
88 GPUs
for Students
CHASE-CI Grant Provides
96 GPUs at UCSD
for Training AI Algorithms on Big Data
The Rise of Brain-Inspired Computers:
Left & Right Brain Computing: Arithmetic vs. Pattern Recognition
Adapted from D-Wave
Calit2’s Qualcomm Institute Has Established a Pattern Recognition Lab
For Machine Learning on GPUs and von Neumann and NvN Processors
Source: Dr. Dharmendra Modha
Founding Director, IBM Cognitive Computing Group
August 8, 2014
UCSD ECE Professor Ken Kreutz-Delgado Brings
the IBM TrueNorth Chip
to Start Calit2’s Qualcomm Institute
Pattern Recognition Laboratory
September 16, 2015
Brain-Inspired Processors
Are Accelerating the Non-von Neumann Architecture Era
“On the drawing board are collections of 64, 256, 1024, and 4096 chips.
‘It’s only limited by money, not imagination,’ Modha says.”
Source: Dr. Dharmendra Modha
Founding Director, IBM Cognitive Computing Group
August 8, 2014
Our Pattern Recognition Lab is Exploring Mapping
Machine Learning Algorithm Families Onto Novel Architectures
Qualcomm
Institute
• Deep & Recurrent Neural Networks (DNN, RNN)
• Graph Theoretic
• Reinforcement Learning (RL)
• Clustering and other neighborhood-based
• Support Vector Machine (SVM)
• Sparse Signal Processing and Source Localization
• Dimensionality Reduction & Manifold Learning
• Latent Variable Analysis (PCA, ICA)
• Stochastic Sampling, Variational Approximation
• Decision Tree Learning
Next Step: Surrounding the UCSD Data Sciences Machine Learning Platform
With Clouds of GPUs and Non-Von Neumann Processors
Microsoft Installs Altera FPGAs
into Bing Servers &
384 into TACC for Academic Access
64-TrueNorth
Cluster
CHASE-CI64-bit GPUs
PRP Hosted
The First National Research Platform Workshop on August 7-8, 2017
Announced in I2 Closing Keynote:
Larry Smarr “Toward a National Big Data Superhighway”
on Wednesday, April 26.
Co-Chairs:
Larry Smarr, Calit2
& Jim Bottum, Internet2
150 Attendees
Expanding to the Global Research Platform
Via CENIC/Pacific Wave, Internet2, and International Links
PRP
PRP’s Current
International
Partners
Korea Shows Distance is Not the Barrier
to Above 5Gb/s Disk-to-Disk Performance
Netherlands
Guam
Australia
Korea
Japan
Our Support:
• US National Science Foundation (NSF) awards
 CNS 0821155, CNS-1338192, CNS-1456638, CNS-1730158,
ACI-1540112, & ACI-1541349
• University of California Office of the President CIO
• UCSD Chancellor’s Integrated Digital Infrastructure Program
• UCSD Next Generation Networking initiative
• Calit2 and Calit2 Qualcomm Institute
• CENIC, PacificWave and StarLight
• DOE ESnet

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Creating a Big Data Machine Learning Platform in California

  • 1. “Creating a Big Data Machine Learning Platform in California” Big Data Tech Forum: Big Data Enabling Technologies and Applications San Diego Chinese American Science and Engineering Association (SDCASEA) Sanford Consortium La Jolla, CA December 2, 2017 Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technology Harry E. Gruber Professor, Dept. of Computer Science and Engineering Jacobs School of Engineering, UCSD http://lsmarr.calit2.net 1
  • 2. Vision: Use Optical Fiber to Connect Big Data Generators and Consumers, Creating a “Big Data” Freeway System “The Bisection Bandwidth of a Cluster Interconnect, but Deployed on a 20-Campus Scale.” This Vision Has Been Building for 15 Years
  • 3. We Have Been Working Towards Distributed Big Data for 15 Years: NSF OptIPuter, Quartzite, Prism Awards PI Papadopoulos, 2013-2015 PI Smarr, 2002-2009 PI Papadopoulos, 2004-2007
  • 4. Based on Community Input and on ESnet’s Science DMZ Concept, NSF Has Funded Over 100 Campuses to Build Local Big Data Freeways Red 2012 CC-NIE Awardees Yellow 2013 CC-NIE Awardees Green 2014 CC*IIE Awardees Blue 2015 CC*DNI Awardees Purple Multiple Time Awardees Source: NSF
  • 5. Terminating the Fiber Optics - Data Transfer Nodes (DTNs): Flash I/O Network Appliances (FIONAs) UCSD Designed FIONAs To Solve the Disk-to-Disk Data Transfer Problem For Big Data at Full Speed on 10G, 40G and 100G Networks FIONAS—10/40G, $8,000 FIONette—1G, $1,000 Phil Papadopoulos, SDSC & Tom DeFanti, Joe Keefe & John Graham, Calit2 John Graham, Calit2
  • 6. How UCSD DMZ Network Transforms Big Data Microbiome Science: Preparing for Knight/Smarr 1 Million Core-Hour Analysis Knight Lab FIONA 10Gbps Gordon Prism@UCSD Data Oasis 7.5PB, 200GB/s Knight 1024 Cluster In SDSC Co-Lo CHERuB 100Gbps Emperor & Other Vis Tools 64Mpixel Data Analysis Wall 120Gbps 40Gbps 1.3Tbps
  • 7. (GDC) Logical Next Step: The Pacific Research Platform Creates a Regional End-to-End Science-Driven “Big Data Superhighway” System NSF CC*DNI Grant $5M 10/2015-10/2020 PI: Larry Smarr, UC San Diego; Calit2 Co-PIs: • Camille Crittenden, UC Berkeley CITRIS, • Tom DeFanti, UC San Diego Calit2, • Philip Papadopoulos, UCSD SDSC, • Frank Wuerthwein, UCSD Physics and SDSC Letters of Commitment from: • 50 Researchers from 15 Campuses • 32 IT/Network Organization Leaders
  • 8. We Measure Disk-to-Disk Throughput with 10GB File Transfer 4 Times Per Day in Both Directions for All PRP Sites January 29, 2016 From Start of Monitoring 12 DTNs to 24 DTNs Connected at 10-40G in 1 ½ Years July 21, 2017 Source: John Graham, Calit2
  • 9. PRP’s First 2 Years: Connecting Multi-Campus Application Teams and Devices
  • 10. Data Transfer Rates From UCSD Physics Building Servers Across Campus and Then To Chicago’s Fermilab Utilizing UCSD Prism Campus Optical Network Source: Frank Wuerthwein, UCSD, SDSC
  • 11. 100 Gbps FIONA at UCSC Allows for Downloads to the UCSC Hyades Cluster from the LBNL NERSC Supercomputer for DESI Science Analysis 300 images per night. 100MB per raw image 30GB per night 120GB per night 250 images per night. 530MB per raw image 150 GB per night 800GB per night Source: Peter Nugent, LBNL Professor of Astronomy, UC Berkeley Precursors to LSST and NCSA NSF-Funded Cyberengineer Shaw Dong @UCSC Receiving FIONA Feb 7, 2017
  • 12. Cancer Genomics Hub (UCSC) Was Housed in SDSC, But NIH Moved Dataset From SDSC to Uchicago - So the PRP Deployed a FIONA to Chicago’s MREN 1G 8G Data Source: David Haussler, Brad Smith, UCSC 15G Jan 2016
  • 13. 40G FIONAs 20x40G PRP-connected WAVE@UC San Diego PRP Now Enables Distributed Virtual Reality PRP WAVE @UC Merced Transferring 5 CAVEcam Images from UCSD to UC Merced: 2 Gigabytes now takes 2 Seconds (8 Gb/sec)
  • 14. Five Examples of Earth Sciences Research Teams That Are in the Early Stages of Using PRP Frank Vernon - Expansion of HPWREN Dan Cayan, Mike Dettinger Regional Downscaling of Climate Models Scott Sellars, Marty Ralph Center for Western Weather and Water Extremes John Delaney- Undersea Cabled Observatory Jules Jaffe, Ocean Microscope
  • 15. Director: F. Martin Ralph Website: cw3e.ucsd.edu Big Data Collaboration with: Source: Scott Sellers, CW3E Collaboration on Atmospheric Water in the West Between UC San Diego and UC Irvine Director, Soroosh Sorooshian, UCSD Website http://chrs.web.uci.edu
  • 16. Calit2’s FIONA SDSC’s COMET Calit2’s FIONA Pacific Research Platform (10-100 Gb/s) GPUsGPUs Complete workflow time: 20 days20 hrs20 Minutes! UC, Irvine UC, San Diego Major Speedup in Scientific Work Flow Using the PRP Source: Scott Sellers, CW3E
  • 17. Jaffe Lab (SIO) Scripps Plankton Camera Off the SIO Pier with Fiber Optic Network
  • 18. Over 300 Million Images So Far! Requires Machine Learning for Automated Image Analysis and Classification Phytoplankton: Diatoms Zooplankton: Copepods Zooplankton: Larvaceans Source: Jules Jaffe, SIO ”We are using the FIONAs for image processing... this includes doing Particle Tracking Velocimetry that is very computationally intense.”-Jules Jaffe
  • 19. New NSF CHASE-CI Grant Creates a Community Cyberinfrastructure Adding a Machine Learning Layer Built on Top of the Pacific Research Platform Caltech UCB UCI UCR UCSD UCSC Stanford MSU UCM SDSU NSF Grant for High Speed “Cloud” of 256 GPUs For 30 ML Faculty & Their Students at 10 Campuses for Training AI Algorithms on Big Data
  • 20. Adding GPUs to FIONAs Supports Data Science Machine Learning Multi-Tenant Containerized GPU JupyterHub Running Kubernetes / CoreOS Eight Nvidia GTX-1080 Ti GPUs ~$13K 32GB RAM, 3TB SSD, 40G & Dual 10G ports Source: John Graham, Calit2
  • 21. 48 GPUs for OSG Applications UCSD Adding >350 Game GPUs to Data Sciences Cyberinfrastructure - Devoted to Data Analytics and Machine Learning SunCAVE 70 GPUs WAVE + Vroom 48 GPUs FIONA with 8-Game GPUs 88 GPUs for Students CHASE-CI Grant Provides 96 GPUs at UCSD for Training AI Algorithms on Big Data
  • 22. The Rise of Brain-Inspired Computers: Left & Right Brain Computing: Arithmetic vs. Pattern Recognition Adapted from D-Wave
  • 23. Calit2’s Qualcomm Institute Has Established a Pattern Recognition Lab For Machine Learning on GPUs and von Neumann and NvN Processors Source: Dr. Dharmendra Modha Founding Director, IBM Cognitive Computing Group August 8, 2014 UCSD ECE Professor Ken Kreutz-Delgado Brings the IBM TrueNorth Chip to Start Calit2’s Qualcomm Institute Pattern Recognition Laboratory September 16, 2015
  • 24. Brain-Inspired Processors Are Accelerating the Non-von Neumann Architecture Era “On the drawing board are collections of 64, 256, 1024, and 4096 chips. ‘It’s only limited by money, not imagination,’ Modha says.” Source: Dr. Dharmendra Modha Founding Director, IBM Cognitive Computing Group August 8, 2014
  • 25. Our Pattern Recognition Lab is Exploring Mapping Machine Learning Algorithm Families Onto Novel Architectures Qualcomm Institute • Deep & Recurrent Neural Networks (DNN, RNN) • Graph Theoretic • Reinforcement Learning (RL) • Clustering and other neighborhood-based • Support Vector Machine (SVM) • Sparse Signal Processing and Source Localization • Dimensionality Reduction & Manifold Learning • Latent Variable Analysis (PCA, ICA) • Stochastic Sampling, Variational Approximation • Decision Tree Learning
  • 26. Next Step: Surrounding the UCSD Data Sciences Machine Learning Platform With Clouds of GPUs and Non-Von Neumann Processors Microsoft Installs Altera FPGAs into Bing Servers & 384 into TACC for Academic Access 64-TrueNorth Cluster CHASE-CI64-bit GPUs
  • 27. PRP Hosted The First National Research Platform Workshop on August 7-8, 2017 Announced in I2 Closing Keynote: Larry Smarr “Toward a National Big Data Superhighway” on Wednesday, April 26. Co-Chairs: Larry Smarr, Calit2 & Jim Bottum, Internet2 150 Attendees
  • 28. Expanding to the Global Research Platform Via CENIC/Pacific Wave, Internet2, and International Links PRP PRP’s Current International Partners Korea Shows Distance is Not the Barrier to Above 5Gb/s Disk-to-Disk Performance Netherlands Guam Australia Korea Japan
  • 29. Our Support: • US National Science Foundation (NSF) awards  CNS 0821155, CNS-1338192, CNS-1456638, CNS-1730158, ACI-1540112, & ACI-1541349 • University of California Office of the President CIO • UCSD Chancellor’s Integrated Digital Infrastructure Program • UCSD Next Generation Networking initiative • Calit2 and Calit2 Qualcomm Institute • CENIC, PacificWave and StarLight • DOE ESnet