EMBL-Sustainable Access to the World's Largest Biomolecular Data Resources
This presentation was given as part of the EOSC Stakeholders Forum Scientific Community Workshop which gives the opportunity to prospective consumers and providers - from both the public and commercial sectors - to discuss needs and opportunities that should drive the definition of the EOSC service portfolio roadmap. This workshop aims to answer the following: - What prospective needs and priorities do scientific communities have as consumers of the EOSC? - How should EOSC facilitate the sharing of data, scientific outputs and services across national and organisational borders? The workshop starts with a presentation of today’s state of play in federating resources and services to enable multi-disciplinary science and transnational access; it featured invited talks from representatives of digital infrastructures, research projects and communities and the long-tail of science. The workshop also involved representatives from both public and commercial organisations in their role as a service provider and service consumer. The workshop participants also took the opportunity to define a list of recommendations giving direction to the development and provisioning of the EOSC portfolio.
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EMBL-Sustainable Access to the World's Largest Biomolecular Data Resources
- 1. Sustainable access to the world’s largest biomolecular data resources EMBL Rupert Lueck | EMBL
- 2. What is EMBL • Europe’s centre of excellence in life science research, services and training • Intergovernmental organization • 26 member states • 237 M€ budget • Majority is core funding by MS to run big infrastructure • Competitive external funding 2 28/11/2018
- 3. 6 Sites in Europe – over 1700 people – 80+ nationalities 3 28/11/2018 Structural biology Hamburg Life sciences Heidelberg Epigenetics and neurobiology Rome Bioinformatics Hinxton EMBL-EBI Structural biology Grenoble Tissue biology and disease modelling Barcelona
- 4. Advanced training EMBL’s missions 4 28/11/2018 Basic research Services Technology development & transfer Integration of life science research
- 5. Trusted Data Resources & Analysis Services Literature & ontologies • Experimental Factor Ontology • Gene Ontology • BioStudies • Europe PMC Chemical biology • ChEBI • ChEMBL • SureChEMBL Molecular structures • Protein Data Bank in Europe • Electron Microscopy Data Bank Gene, protein & metabolite expression • Expression Atlas • Metabolights • PRIDE • RNA Central Protein sequences, families & motifs • InterPro • Pfam • UniProt Genes, genomes & variation • Ensembl • Ensembl Genomes • GWAS Catalog • Metagenomics portal Systems • BioModels • BioSamples • Enzyme Portal • IntAct • Reactome Molecular Archives • European Nucleotide Archive • European Variation Archive • European Genome-phenome Archive • ArrayExpress • EMBL-EBI data • EMBL-EBI services • EGI & ELIXIR AAI Hosted and operated by EMBL-EBI Reusable Data – Curated, standardised, integrated, freely available and sustainable Tools & Services https://www.ebi.ac.uk/services
- 6. Big Data - Big Demand 38 million requests to EMBL-EBI websites every day EMBL-EBI delivered 152 million jobs to its users in 2016 Scientists at over 3.2 million unique IP addresses use EMBL-EBI websites 200 petabytes of storage capacity in our data centres
- 7. History of cloud activities • Helix Nebula Science Cloud • Commercial Clouds • Embassy Cloud • GPU Cloud • EOSCpilot • EOSC-hub • EOSC-Life • ... 28/11/20187
- 8. EMBL Partnerships Integration of life science research in Europe 8 28/11/2018 Shaping science policy and strategy Fostering international collaboration