This slides are for a presentation on Prim's and Kruskal's algorithm. Where I have tried to explain how both the algorithms work, their similarities and their differences.
3. MINIMUM COST SPANNING TREE
A Minimum Spanning Tree (MST) is a subgraph of an undirected
graph such that the subgraph spans (includes) all nodes, is
connected, is acyclic, and has minimum total edge weight
4. ALGORITHM CHARACTERISTICS
• Both Prim’s and Kruskal’s Algorithms work with
undirected graphs
• Both work with weighted and unweighted graphs
• Both are greedy algorithms that produce optimal
solutions
5. Kruskal’s algorithm
1. Select the shortest edge in a
network
2. Select the next shortest edge
which does not create a cycle
3. Repeat step 2 until all vertices
have been connected
Prim’s algorithm
1. Select any vertex
2. Select the shortest edge
connected to that vertex
3. Select the shortest edge
connected to any vertex
already connected
4. Repeat step 3 until all
vertices have been
connected
6. Work with edges, instead of nodes of a graph
Two steps:
– Sort edges by increasing edge weight
– Select the first |V| – 1 edges that do not
generate a cycle
KRUSKAL’S ALOGORITHM
7. Consider an undirected, weight
graph
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10
WALK-THROUGH
8. Sort the edges by increasing edge
weight
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
9. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
10. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
11. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
Accepting edge (E,G) would create a
cycle
12. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
13. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
14. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
15. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
16. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
17. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
18. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
19. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G 3
2
4
6
3
4
3
4
8
4
3
10 edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
20. Select first |V|–1 edges which do
not generate a cycle
edge dv
(D,E) 1
(D,G) 2
(E,G) 3
(C,D) 3
(G,H) 3
(C,F) 3
(B,C) 4
5
1
A
H
B
F
E
D
C
G
2
3
3
3
edge dv
(B,E) 4
(B,F) 4
(B,H) 4
(A,H) 5
(D,F) 6
(A,B) 8
(A,F) 10
Done
Total Cost = dv = 21
4
}not
consider
ed
39. DIFFERENCE BETWEEN PRIM’S AND
KRUSKAL’S ALGORITHM
• The difference between Prim’s algorithm and Kruskal’s
algorithm is that the set of selected edges forms a tree at all
times when using Prim’s algorithm while a forest is formed
when using Kruskal’s algorithm.
• In Prim’s algorithm, a least-cost edge (u, v) is added to T such
that T∪ {(u, v)} is also a tree. This repeats until T contains n-1
edges.
40. •Both algorithms will always give solutions with
the same length.
•They will usually select edges in a different order.
•Occasionally they will use different edges – this
may happen when you have to choose between
edges with the same length.
SOME POINTS TO NOTE
Just a quick revision about graphs:
Graphs consist of two elements:
points called vertices
lines called edges
Properties of Edges:
Edges connect two vertices.
Edges only intersect at vertices.
Edges joining a vertex to itself are called loops.
Moral of the Story for Graphs:
One graph may be drawn in (infinitely) many ways, but it always provides us with the same information.
Graphs are a structure for describing relationships between objects.The vertices denote the objects and the edges represent the relationship.
Maps applications:
Functional Genomics and Microarray technology
Massive Appllication in Networks
Network Clluster Analysis
Network Comparison and aligment