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Sundem, G. (2010). Brain
Candy: Science, Paradoxes,
Puzzles, Logic, and Illogic to
Nourish Your Neuron.
Navigating the Scientific Literature
John Borghi, PhD | @JohnBorghi
Liang, P., Xu, Y., Zhang, X., Ding, C.,
Huang, R., Zhang, Z., ... & Huang, J.
(2015). CRISPR/Cas9-mediated
gene editing in human
tripronuclear zygotes.Protein &
Cell, 1-10.
Noble, K. G., Houston, S. M., Brito,
N. H., Bartsch, H., Kan, E.,
Kuperman, J. M., ... & Sowell, E. R.
(2015). Family income, parental
education and brain structure in
children and adolescents. Nature
Neuroscience, 18, 773–778.
Searching the Scientific Literature
• Allow Time
• Isolate Objective
• Document Carefully
• Be Selective
• Verify
• Know When to Quit
• What search are you doing?
– Exploratory
– Specific research question
– Searching for a particular article
Searching the Scientific Literature
Adapted from the International University of Bremen
Cargill, M. & O’Connor. P. (2009). Writing Scientific Research Articles: Strategy and Steps.
Gargouri, Y., Larivière, V., Gingras, Y., Carr, L., & Harnad, S. (2012). Green and gold open access percentages and growth, by discipline. arXiv preprint arXiv:1206.3664.
Halcombe, A. (2013). Scholarly publishers and their high profits.
Harnad, S. (1994). The Subversive Proposal. In Ann Shumelda Okerson & James J. O'Donnell (Eds.) Scholarly Journals at the Crossroads:
A Subversive Proposal for Electronic Publishing
Van Noorden, R. (2013). NIH sees surge in open-access manuscripts.
Pepe, A., Mayernik, M., Borgman, C. L., & Van de Sompel, H. (2010). From artifacts to aggregations: Modeling scientific life cycles on the semantic web. .Journal of the
American Society for Information Science and Technology, 61(3), 567-582.
Colditz, J. (2012). Publication process with OA. Figshare. doi:10.6084/m9.figshare.91458
Bohannon, J. (2013). Who’s afraid of peer review?. Science, 342, 60-65.
Beall’s List of Predatory Publishers 2015
Let’s Search For Some Stuff!
Human genome editing with CRISPR
The relationship between parental education and
neuroscience
The relationship between thinking and brain cancer
Let’s Search For Some Stuff!
Miller, E. K., & Cohen, J. D. (2001). An integrative theory of prefrontal cortex function.
Annual review of neuroscience, 24(1), 167-202.
Gong, L. I., Suchard, M. A., & Bloom, J. D. (2013). Stability-mediated epistasis constrains
the evolution of an influenza protein. Elife, 2, e00631.
Karnowski, A., Chevrier, S., Belz, G. T., Mount, A., Emslie, D., D’Costa, K., ... & Corcoran,
L. M. (2012). B and T cells collaborate in antiviral responses via IL-6, IL-21,
and transcriptional activator and coactivator, Oct2 and OBF-1. The Journal of
experimental medicine, 209(11), 2049-2064.
Bernier, U. R., Kline, D. L., Allan, S. A., & Barnard, D. R. (2015). Laboratory Studies of
Aedes aegypti attraction to ketones, sulfides, and primary chloroalkanes
tested alone and in combination with l-lactic acid. Journal of the American
Mosquito Control Association, 31(1), 63-70.
Wang, N., Li, Y., Niu, W., Sun, M., Cerny, R., Li, Q., & Guo, J. (2014). Construction of a
live‐attenuated HIV‐1 vaccine through genetic code expansion. Angewandte
Chemie, 126(19), 4967-4971.
Maldacena, J. (1999). The large-N limit of superconformal field theories and
supergravity. International journal of theoretical physics, 38(4), 1113-1133.
Gardner, C. C., & Gardner, G. J. (2015). Bypassing interlibrary loan via Twitter: An Exploration of #icanhazpdf Requests.
Thanks!
The Rita and Frits Marcus Library | The Rockefeller University
@BoldSignalsPod | BoldSignalsPodcast.tumblr.com

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Navigating the Scientific Literature

  • 1. Sundem, G. (2010). Brain Candy: Science, Paradoxes, Puzzles, Logic, and Illogic to Nourish Your Neuron. Navigating the Scientific Literature John Borghi, PhD | @JohnBorghi
  • 2.
  • 3.
  • 4. Liang, P., Xu, Y., Zhang, X., Ding, C., Huang, R., Zhang, Z., ... & Huang, J. (2015). CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes.Protein & Cell, 1-10. Noble, K. G., Houston, S. M., Brito, N. H., Bartsch, H., Kan, E., Kuperman, J. M., ... & Sowell, E. R. (2015). Family income, parental education and brain structure in children and adolescents. Nature Neuroscience, 18, 773–778.
  • 5. Searching the Scientific Literature • Allow Time • Isolate Objective • Document Carefully • Be Selective • Verify • Know When to Quit
  • 6. • What search are you doing? – Exploratory – Specific research question – Searching for a particular article Searching the Scientific Literature
  • 7. Adapted from the International University of Bremen
  • 8. Cargill, M. & O’Connor. P. (2009). Writing Scientific Research Articles: Strategy and Steps.
  • 9.
  • 10.
  • 11.
  • 12.
  • 13.
  • 14.
  • 15. Gargouri, Y., Larivière, V., Gingras, Y., Carr, L., & Harnad, S. (2012). Green and gold open access percentages and growth, by discipline. arXiv preprint arXiv:1206.3664.
  • 16. Halcombe, A. (2013). Scholarly publishers and their high profits.
  • 17. Harnad, S. (1994). The Subversive Proposal. In Ann Shumelda Okerson & James J. O'Donnell (Eds.) Scholarly Journals at the Crossroads: A Subversive Proposal for Electronic Publishing
  • 18.
  • 19. Van Noorden, R. (2013). NIH sees surge in open-access manuscripts.
  • 20.
  • 21. Pepe, A., Mayernik, M., Borgman, C. L., & Van de Sompel, H. (2010). From artifacts to aggregations: Modeling scientific life cycles on the semantic web. .Journal of the American Society for Information Science and Technology, 61(3), 567-582.
  • 22. Colditz, J. (2012). Publication process with OA. Figshare. doi:10.6084/m9.figshare.91458
  • 23.
  • 24. Bohannon, J. (2013). Who’s afraid of peer review?. Science, 342, 60-65. Beall’s List of Predatory Publishers 2015
  • 25.
  • 26.
  • 27.
  • 28.
  • 29. Let’s Search For Some Stuff! Human genome editing with CRISPR The relationship between parental education and neuroscience The relationship between thinking and brain cancer
  • 30. Let’s Search For Some Stuff! Miller, E. K., & Cohen, J. D. (2001). An integrative theory of prefrontal cortex function. Annual review of neuroscience, 24(1), 167-202. Gong, L. I., Suchard, M. A., & Bloom, J. D. (2013). Stability-mediated epistasis constrains the evolution of an influenza protein. Elife, 2, e00631. Karnowski, A., Chevrier, S., Belz, G. T., Mount, A., Emslie, D., D’Costa, K., ... & Corcoran, L. M. (2012). B and T cells collaborate in antiviral responses via IL-6, IL-21, and transcriptional activator and coactivator, Oct2 and OBF-1. The Journal of experimental medicine, 209(11), 2049-2064. Bernier, U. R., Kline, D. L., Allan, S. A., & Barnard, D. R. (2015). Laboratory Studies of Aedes aegypti attraction to ketones, sulfides, and primary chloroalkanes tested alone and in combination with l-lactic acid. Journal of the American Mosquito Control Association, 31(1), 63-70. Wang, N., Li, Y., Niu, W., Sun, M., Cerny, R., Li, Q., & Guo, J. (2014). Construction of a live‐attenuated HIV‐1 vaccine through genetic code expansion. Angewandte Chemie, 126(19), 4967-4971. Maldacena, J. (1999). The large-N limit of superconformal field theories and supergravity. International journal of theoretical physics, 38(4), 1113-1133.
  • 31. Gardner, C. C., & Gardner, G. J. (2015). Bypassing interlibrary loan via Twitter: An Exploration of #icanhazpdf Requests.
  • 32.
  • 33. Thanks! The Rita and Frits Marcus Library | The Rockefeller University