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Mrr 05152011 pmdb_proposal

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Mariam Reyad
Mariam Reyad
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Mariam Rizkallah Open Source Technologies Department, Information Technology Institute, Egypt Pharmacomicrobiomics: The Drug-microbiome Database!
PMDB:Outline ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
PMDB: Introduction - HGP ,[object Object],[object Object],[object Object],[object Object],[object Object],Result: Humans are 99% alike! Source: Science, 16 FEBRUARY 2001VOL 291, ISSUE 5507, PAGES 1145-1434
PMDB: Introduction - HMP ,[object Object],[object Object],[object Object],Source: http://commonfund.nih.gov/hmp/
Human-microbiota relationship: It's complicated! ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Source: http://pharmacomicrobiomics.com/
PMDB: The Birth of a Novel Discipline HGP Pharmacogenetics & Pharmacogenomics HMP Pharmacomicrobiomics Body site Pathway: genes responsible Chemical ID Drug name Assay Drug class Effect (Increase/Decrease level) Microbial ID Publications DB Description Pubmed ID
The Database Source: UT-ORNL-KBRIN Bioinformatics Summit 2011 http://citg.uthsc.edu/summit_11
What do we need? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Progress So Far ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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Mrr 05152011 pmdb_proposal

  • 1. Mariam Rizkallah Open Source Technologies Department, Information Technology Institute, Egypt Pharmacomicrobiomics: The Drug-microbiome Database!
  • 2.
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  • 6. PMDB: The Birth of a Novel Discipline HGP Pharmacogenetics & Pharmacogenomics HMP Pharmacomicrobiomics Body site Pathway: genes responsible Chemical ID Drug name Assay Drug class Effect (Increase/Decrease level) Microbial ID Publications DB Description Pubmed ID
  • 7. The Database Source: UT-ORNL-KBRIN Bioinformatics Summit 2011 http://citg.uthsc.edu/summit_11
  • 8.
  • 9.