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Improving links between Human Proteome Atlas (HPA) and EMBL-EBI resources

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Rafael C. Jimenez
Rafael C. Jimenez

11 February 2013

Data & Analytics
1 of 10
Rafael C. Jimenez 2013-02-11 Improving links between Human Proteome Atlas (HPA) and EMBL-EBI resources
Protein expression integration 13.12.182 Immunohistochemistry Mass spectrometry Protein sequences
EBI search - S4 • Summaries from different sources • Links to the original data • “Just enough” just “in time” 13.12.183
Protein Annotation Ontology - Biosapiens 13.12.184 • Common control vocabulary • Links to the original data • Comparable annotations
DAS integration 13.12.185 Immunohistochemistry Mass spectrometry Protein sequences DAS DAS DAS DAS/S4
Client 13.12.186
13.12.187
8
Expression metadata integration 13.12.189 • Common fields • Species • Organism part • Tissue • Subcellular location • Cell type • Source type • Abundance • ... • Format and distribution • Federation with a common query interface • DAS • mzTab? • RDF? • ...
Improving links between Human Proteome Atlas (HPA) and EMBL-EBI resources

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