SlideShare a Scribd company logo
1 of 24
Download to read offline
FiBLDOSSIER
No.2September2001
1st
edition
Plant Breeding
Techniques
An Evaluation for
Organic Plant Breeding
In cooperation with:
Seeds form the basis for agricultural
production, but most organic growers
know little about how their seedstocks
have been produced. Within the organic
movement the discussion on the com-
patibility of plant breeding techniques
has been accelerated by the public dis-
cussion on genetic engineering. This
decision-making is important to develop
a framework for organic plant breeding
and facilitate investment by breeding
companies.
This dossier explains all standard tech-
niques used in modern plant breeding
and why they have been developed. The
consequences of not allowing certain
techniques for organic plant breeding
are outlined, along with suggestions for
alternative techniques that could be
adopted.
Introduction
2
1 Parent plants of annual crops have to be grown at least for one generation under organic conditions, while biannual plants and perennials have
to be grown for at least two generations under organic conditions.
2 These are the demands of the EU Regulation 2092/91 until the end of 2003. By 2004 organic producers will have to use only organic seeds
and vegetative multiplication material.
It is important that breeding, multiplication, and mainte-
nance techniques are identified and examined to assess their
compatibility with the technical, ethical and environmental
objectives of organic agriculture. This process will assist the on-
going national and international discussions on this topic and
will also be of value in light of the requirement for all organic
producers to use organic seed by 2004 (EU Regulation 2092/91).
The issue of plant breeding techniques and their compatibil-
ity with organic farming is complex due to the range of tech-
niques available balanced against the different demands for
variety and crop performance. Appropriate organic plant breed-
ing will serve to develop improved varieties for organic systems
without jeopardising the ethical and environmental integrity of
organic agriculture.
Currently, only the use of varieties obtained by genetic engi-
neering is forbidden in organic agriculture across Europe (EU
Regulation 2092/91). The regulation requires also that parent
plants of annual crops have to be grown at least for one genera-
tion under organic conditions, while biannual plants and peren-
nials have to be grown for at least two generations under orga-
nic conditions.Figure1 should help to understand thedefinition
of «organic seeds» and «organic varieties» and to distinguish the
different levels of breeding, maintenance, and multiplication.
The aim of this dossier is to provide information on plant
breeding techniques currently used to help the debate shaping
the future of organic plant breeding. Therefore, the mechanism
of standard breeding and multiplication techniques is explained
with the aid of simple graphics. In addition, the actual applica-
tion,the consequences of a rejection of a technique and the alter-
natives are described. As a guideline for determining the suita-
bility of breeding and multiplication techniques for organic
breeding, criteria are formulated in the last part of this dossier.
Breeding
of varieties
Maintenance
of varieties
Multiplication
of seeds and vegetative
multiplication material
Prohibited
Allowed2
if organic
material is not available
To be used if available2
Genetic engineering Conventional plant breeding Organic plant breeding
GMO varieties Conventional varieties Organic varieties
Maintenance under
conventional conditions
Maintenance under
organic conditions
Multiplication under
conventional conditions
Multiplication under
organic conditions1
Conventional seed and vege-
tative multiplication material
Organic seeds and vegetative
multiplication material
Figure 1: Overview on the different levels of breeding, maintenance, and multiplication.
Over the last fifty years plant breeding has largely developed
in response to the demands of intensive agricultural produc-
tion, striving for increased yields, storability and cosmetic per-
fection under a system of management based on artificial fer-
tiliser nutrition and the use of pesticides. Until now, organic
farmers have made use of these traditionally bred varieties but
the question being asked more and more regularly is «do these
varieties truly fulfil the needs of organic production?» Are the
seeds and vegetative multiplication material, usually results of
traditional and conventional breeding programs, adapted to the
conditions of organic agriculture? And, what do consumers
expect from an organic variety? Healthy, tasty, and unique prod-
ucts?
Furthermore, the quality of organic products is not simply
determined by what they are, but also by taking into account
how these crops have been produced. This aspect should also be
considered when judging breeding lines for agricultural and
horticutural production.
Undoubtedly, the aims of some modern breeding programs
and organic breeding programs have certain similarities.
However, a number of considerations are particularly important
for developing varieties suited to organic conditions:
● optimal adaptation to local climate and nutrient dynamics
● nutrient efficiency
● durable resistance and tolerance against pests and
diseases
● yield stability
● storability
● nutritional and sensorical quality
Organic plant breeding aims should be defined on a crop by
crop bases involving farmers, breeders, traders, and consumers.
In general, plant breeding can be described as the total of
activities to improve the genetic properties of a cultivated crop.
A breeder develops a new variety with one or more specific
aims. Therefore, he has to search for parental plants (other vari-
eties or wild relatives) with the desired traits. To obtain plants
with the combination of desired characteristics the breeder
makes crosses with the parental plants. The result of a cross is a
large number of seeds with different genetic make-up (popula-
tion). In the next plant generations the breeder has to select for
individual plants with the best combinations. To facilitate selec-
tion he has different techniques available, the choice of which
will depend on the crop (self pollinator, cross pollinator, or
plant with vegetative multiplication) and the traits he selects for.
In official field trials the usefulness of the new varieties will
be compared to existing standard varieties. If the new variety is
distinguishable from all other varieties and its appearance is
uniform and stable enough over time the breeder will maintain
and multiply it for the market.
The need for organic plant breeding
Plant breeding and multiplication techniques
3
Inducing variability
with other varieties or wild plants
Selection of parental lines
with desired properties
Crossing parental lines
to combine desired properties
Selection of plants
for desired traits
Official testing of the new variety
in field tests
Maintenance
for the purity of the variety
Multiplication
for marketable seeds or transplants
How does plant breeding and multiplication work
Plant breeding is characterised by three main steps:
● Induction of variation by creation of crosses or by variation-
inducing treatments
● Selection of desired traits in new varieties
● Propagation and multiplication of breeding lines
At each step different techniques can be applied.We can gen-
erally distinguish between plant breeding and multiplication
techniques which have an impact at:
● plant/population level
● cell/tissue level
● DNA level
Table 1 gives an overview of all techniques and helps with
colours and symbols to lead through this booklet. Techniques
operating at the plant level are carried out with plants in their
«natural» compartment, the soil, while techniques on cell and
DNA level are applied under laboratory conditions before the
resulting varieties are tested under field conditions. Some cell
techniques and especially DNA techniques enable the crossing
of natural barriers.
All cell- and tissue culture techniques rely on the capacity of
plant cells to grow on synthetic growth media and to differen-
tiate upon stimulation with the appropriate mix of added plant
hormones. All plant material needs to be surface sterilized and
grown aseptically to avoid contamination with microbes.
General distinction of breeding techniques
4
SelectionMultiplicationInducingvariation
Table 1: Breeding and multiplication techniques – at which step of the breeding process (inducing variation,
selection, multiplication) and at which level (plant, cell, DNA) do they take place.
DNA level
• Genetic engineering
– DNA-transfer:
– PEG-mediated transfer
– Electroporation
– Micro-injection
– Particle gun transfer
– Agrobacterium treatment
• Marker-assisted selection
Cell/tissue level
• Anther/microspore culture
• «In vitro» pollination
• Ovary/embryo culture
• Polyploidisation
• Protoplast/cytoplast fusion
• Somaclonal variation
• «In vitro» selection
• «In vitro» multiplication
• Meristem culture
• Somatic embryogenesis
Plant/population level
• Combination breeding
• Crossing varieties
• Bridging crosses
• Repeated back-crossing
• Temperature treatment
• Cutted/grafted style
• Mentor pollen technique
• F1-Hybrid breeding
• Mutation induction
• Mass selection
• Pedigree selection
• Site determined selection
• Change in environment
• Change in sowing time
• Ear bed method
• Indirect selection
• Test crosses
• Generative multiplication
• Vegetative multiplication
– Partitioned tubers
– Scales, husks,
partitioned bulbs
– Brood buds, bulbils
– Offset bulbs, etc.
– Layer, cut and graft shoots
– Rhizomes
• Apomixis
In the following chapters, breeding techniques will be
described starting from methods that are applied on the plant or
crop level down to the level of tissue, cells and DNA. The tech-
niques on cell and DNA level are the most controversial for
organic plant breeding. These so-called «in vitro» techniques
have become increasingly common in conventional plant breed-
ing and are the basis of breeding for quite a large number of veg-
etable, flower, and cereal crops. However, one can argue that
these techniques may not be appropriate for organic agriculture
as there is no direct contact between the plant and the soil dur-
ing the process. For each «in vitro» technique the «Pros and
Cons», «The consequences of rejection», and the «Alternatives»
to this technique are given in addition to the «Approach» and
«Application». Within «The consequences of rejection» two dif-
ferent levels are distinguished:
● Consequences on variety level: the rejection of a technique
prohibits the use of all varieties once bred with this tech-
nique.
● Consequences on breeding level: the rejection of a technique
makes restrictions on future cultivars and breeding pro-
grammes.
The use of genetically modified organisms is prohibited in
organic agriculture (EU regulation 2092/91 on organic agricul-
ture). Therefore, no details are given on these techniques within
this booklet. DNA diagnostic techniques, which enable selection
at DNA level, are not necessarely related to genetic engineering
because they do not involve the genetic modification of crop
DNA. Therefore, these techniques could be considered for
organic plant breeding and are explained within this booklet. In
addition, the technique of protoplast fusion, which is related to
genetic engineering because it can involve transfer of large
pieces of chromosomes from alien species, is also considered.
5
A simplified story – breeding and multiplication of tomatoes
Photos:JanVelema,VitalisBiologischeZadenBV
The flower of a selected tomato plant is emas-
culated …
… while pollen of an other selected tomato
plant is collected.
The pollen is then transferred on to the style
for fertilisation. This crossing induces varia-
tion.
Offsprings are selected for different criteria
like resistance to diseases, taste, or yield.
After a long period of testing, the new variety
is multiplied …
… to get seeds for the market.
Combination breeding
Approach:
Crossing two genotypes of the same
species, for example two established
cultivars. Depending on the plant,
whether it is asexually propagating, self-
pollinating or cross-pollinating, various
generations are propagated and selected
after the cross.
Application:
Combination breeding is widely
used to create variation in breeding
lines.
Crossing varieties
or species
Approach:
Crossing of plants with cultivars
from other climatic conditions, with
wild relatives, or closely related species.
Basically, there is a limit to the ability of
one plant to fertilise a plant of another
species but, breeders have developed a
number of methods to get around these
cross limitations, for instance treatment
of the flower or rescue of embryos.
Methods are described later in this
booklet which can be carried out in the
greenhouse or in the laboratory.
Application:
Widely used technique with varying
success rates.
Techniques: approaches, application, alternatives
Techniques to induce variation at the plant/population level
6
Crossing of wheat: preparation of the flower
(emasculation) …
… pollination by hand …
… and protecting ears with little bags after
pollination.
Photos:GabrielaBrändle,FAL
variety A variety B
variety A‫ן‬B
variety
wild plant
Repeated back-crossing
Approach:
Species crosses may result in proge-
ny that have too many wild characteris-
tics making direct selection for valuable
traits impossible. In these cases, repeat-
ed back-crossing with a well-adapted
cultivar may eliminate some of the wild
and/or exotic traits, finally producing a
genotype that is highly similar to the
cultivar but with the additional desired
characteristic. A breeder must usually
make three or four back-crosses before
being able to switch to pedigree selec-
tion (see page 15).
Application:
Repeated back-crossing is always
applied when a desirable new trait is
incorporated into an existing variety. It
has already proven its value for a great
number of varieties which have gained a
high tolerance to biotic and abiotic
stress. Examples are the introduction of
race-specific resistance genes against
fungal pathogens in lettuce, tomatoes,
and many cereals.
7
Bridging cross
Approach:
A method of bypassing an incom-
patibility barrier between two species or
genotypes by using a third species or
genotype, which is partly compatible
with each of them, in an intermediate
cross. The wild plant is first crossed
with another (wild) species, its progeny
is selected for the desired characteristic
and these are then crossed with the cul-
tivar.
Application:
Used in cases where the desired
characteristic is easy to select. Making
bridging crosses is a time-consuming
process. Once the characteristic has
been incorporated in the cultivar, a
number of back-crosses are needed to
rogue out as many undesirable 'wild
characters' as possible.
A
C
A‫ן‬C
(A‫ן‬C)‫ן‬B
well-adapted
cultivar
cultivar with
too many wild
characteristics
new!
B
not
possible
Temperature treatment
of the style
Approach:
Exposing the plant or the style to
higher temperatures for a certain period
of time may break down some of the
incompatibility barriers in the style.
After the temperature treatment, the
pollen may succeed in working its way
down through the style to the ovary.
Application:
Mostly used in ornamental plants
(e.g. lilies).
A‫ן‬B
A
B
Mentor pollen technique
Approach:
The mentor pollen technique can be
used to solve recognition and growth
problems. To this end, pollen from the
desired male parent is mixed with
pollen from the same species as the
maternal plant. The latter's pollen has
been partially inactivated by irradia-
tion; it still germinates but does not fer-
tilise. The mentor pollen germ tubes
'guide' the pollen germ tubes from the
desired male parent to the ovary, which
is fertilised by the pollen. Mentor pollen
which has not been irradiated, and
which has thus retained its vigour, may
also be used but is less efficient, because
it competes with the pollen of the
desired parent.
Application:
This technique is mainly used in the
breeding of ornamentals.
Cut style
Approach:
This method is used when pollen
grains germinate on the stigma, but can-
not grow far enough into the style, so that
the ovary is never fertilised. Sometimes
fertilisation can be achieved by cutting
(part of) the style of the female plant and
applying pollen, mixed with stigma juice,
to the surface of the cut. The pollen tube
now has only a short distance to grow,
increasing the chance of fertilisation.
Application:
This method is suitable only for
some plants, such as ornamentals with a
long style. Seed is only likely to be
formed if the two species are closely
related.
Grafting on the style
Approach:
This method can be used when
pollen fails to germinate on the stigma
of the female plant. Pollen is first
applied to the stigma of a plant of the
same species, so that it germinates effec-
tively and the pollen grows into the
style. The style is then cut off, just below
the point reached by the pollen germ
tubes, and grafted on a cut style of the
desired female plant. When the two
styles have joined, the pollen germ tubes
continue down the style of the female
plant and fertilises the ovary.
Application:
For practical reasons, the method is
only feasible for plants with a fairly long
and thick style and is mainly used for
ornamental plants such as lilies.
8
A‫ן‬B
A A
B
A‫ן‬B
B
B
AA
A A
A
B
A‫ן‬B
B
9
F1 hybrid breeding
Approach:
Hybridisation is a way of achieving highly uniform and
productive varieties. Parental lines (of cross pollinators) have
to be inbred for a number of generations to obtain homozy-
gous lines. The F1 hybrid (the hybrid variety) is the result of a
cross between two homozygous inbred lines. These inbred
lines sometimes have reduced vigour but, their progeny (F1
hybrids) is highly uniform and vigorous due to heterosis. The
F1 hybrid represents the new variety and is sold to the client.
Therefore, large numbers of seed need to be produced by fer-
tilisation of the inbred maternal line with the pollen of the
inbred paternal line. In plants where male and female inflores-
cence are physically separated (monoecious), the male inflo-
rescence is removed mechanically (e.g. maize). Other crops are
manually emasculated or cytoplasmatic male sterility (CMS) is
introduced in the maternal line through crossing or protoplast
fusion (for details see protoplast fusion). So-called Restorer
lines without male sterility, which have the same genetic make-
up as the maternal line, are used to maintain the female line.
In seed-producing crops, these Restorer genes are also present
in paternal lines, so that the resulting F1 hybrid can produce
fertile pollen and set seed.
Due to the heterozygous nature of the F1-hybrid seeds, the
progeny of these plants will be highly heterogeneous (segrega-
tion of favourable traits). It is therefore unlikely that seeds
from a F1-hybrid crop will give the same quality and yield as
the seeds bought from the breeding company (built-in prod-
uct protection). Farmers are thus forced to buy new seed every
year and this economical aspect is the main reasons why
hybrids are so popular with breeders.
Application:
Widely used technique in many crops (vegetables, maize,
rye, sunflower).
A B
repeated
inbreeding
repeated
inbreeding
F1 A‫ן‬B
A inbred B inbred
Pros and Cons:
Pros: -uniform and productive crops.
-built-in product protection as an economic guarantee
for breeders.
Cons: -multiple inbreeding of parental lines can lead to
plants which would not survive under organic condi-
tions.
-no useful seeds can be obtained from hybrids and
therefore, farmers are forced to buy new seeds.
-the nutritional value of hybrids is controversially dis-
cussed.
Consequences of a rejection:
• At variety level: a total rejection of F1 hybrids for all crops
would make vegetable crop production difficult for the
next 5 to 15 years because many established varieties would
have to be replaced. If restrictions are limited to CMS
hybrids without Restorer gene, a small number of vegetable
varieties (leek, cabbage) would not be available for organic
agriculture (see also protoplast fusion).
• At breeding level: time consuming breeding programmes
have to be established to get varieties with similar proper-
ties and new regulations to protect breeders work have to
be established.
Alternatives:
Quality and yield improvement can be achieved by pedi-
gree and mass selection among open pollinated varieties. If F1
hybrid selection is judged as a technique that is not suitable for
organic breeding in the future, all other «traditional» tech-
niques have to be evaluated crop by crop to start special organ-
ic breeding programmes.
Anther and microspore culture
Approach:
Immature anthers or pollen grains are cultivated «in vitro»
to induce pollen grains to develop into multicellular struc-
tures, particularly into embryos, with a single set of chromo-
somes (haploid plants). When such haploid embryos or plants
are treated with chromosome doubling agents, e.g. colchicine,
their normal chromosome number is restored (and thus their
fertility) and the obtained plants are pure (homozygous or
inbred) lines. In some cases chromosome doubling occurs
spontaneously during «in vitro» culture.
Culture of microspores (pollen grain) is actually a further
elaboration of anther culture. Rather than using whole
anthers, only the microspores are cultured.
Application:
Anther and microspore culture is usually carried out at the
beginning of a breeding programme. These techniques are
applied to obtain homozygous plants in a short time and are
commonly used to breed barley, crucifers, and solanum
species.
Pros and Cons:
Pros: -time and work-saving to get homozygous lines for
hybridisation.
Cons: -laboratory technique using toxic substances.
-generative process is turned into a vegetative process
Consequences of a rejection:
• At variety level: some existing varieties of e.g. barley,
Brussels sprouts, and pepper would be ruled out. It is not
clear if the history of «critical» varieties can be traced back.
• At breeding level: the more time-consuming inbreeding
must be used to get homozygous lines.
Alternatives:
These techniques aim to simplify the process of selection
and to accelerate the process to get homozygous lines for mak-
ing F1 hybrids. However, no new characteristics are added to
the plant. From a genetic point of view, plants obtained
through the culture of anthers or microspores are identical to
inbred lines. Therefore, with more time and work almost the
same results could be achieved by traditional breeding.
Techniques to induce variation
at the cell/tissue level
10
Antherculture
Microspore culture
microspores
on medium
haploid
embryo
haploid
plant
diploid
plant
colchicine
cut and
centrifugate
Mutation induction
Approach:
New traits often arise through mutations or changes in
DNA. Mutations may occur spontaneously (e.g. by exposure to
sunlight, cold or heat, radicals) during cell division or may be
provoked by exposing plants to irradiation or chemical agents.
Most mutations are recessive and as such are not directly visi-
ble in the treated plant. However, after selfing, the mutated
genotypes may be identified in the progeny, when two reces-
sive alleles are combined in one plant.
Application:
Some examples of genetic variation through induced
mutations are flower colour in ornamentals, some sweet cher-
ry varieties, and some dwarfing genes in cereals. Although
there is still a large selection of tried and tested mutagens on
the market, this technique is not used frequently anymore.
This method is often combined with «in vitro» selection for
resistance against salt, heavy metals, or toxic compounds.
Pros and Cons:
Pros: -rapid induction of variation when new traits are
needed.
Cons: -use of toxic substances or radiation.
-can be replaced by less hazardous techniques.
Consequences of a rejection:
• At variety level: if varieties which originate from induced
mutations were rejected, some varieties in different crops
(e.g. sweet cherries and ornamental plants) would be
affected. However, it is not clear if the history of these
varieties could be traced back.
• At breeding level: not an important loss.
Alternatives:
Mutations also occur spontaneously and therefore, natural
variation in cultivated and wild plants may be sufficient to
obtain the desired traits. However, crossing techniques usually
result in a similar level of natural variation.
Ovary and embryo culture
Approach:
Despite successful fertilisation, an embryo may not devel-
op into a mature seed. The purpose of ovary and embryo cul-
ture is to transfer the embryo to an artificial nutritional sub-
strate at an early stage, so that it need no longer depend on
plant resources.
In ovary culture, the entire ovary or slices of the ovary are
placed on the substrate. The ovules swell and at a certain point
are removed from the ovaries and cultured independently. By
this time, the ovules have in fact become seeds on a substrate,
where they may germinate.
In embryo culture, embryos are isolated from fertilised
flower buds and placed on a nutritive substrate to germinate.
Application:
Embryo culture (and ovary culture) is the most frequently
used technique to cross in resistance genes from (wild) closely
related species. These techniques were often used for tomatoes,
sweet pepper, courgettes, lettuce, wheat, and a lot of other
crops. 80 to 100% of the cultivars originate from one or the
other inter-species cross. More combinations can be achieved
than with standard crosses, since the first steps of embryogen-
esis have been made on the plant and development is com-
pleted by growing the embryo on substrate.
Pros and Cons:
Pros: -improve the chances of overcoming natural barriers of
crossing that could rarely occur in nature.
Cons: -forced development of embryos under artificial and
sterile conditions using synthetic phytohormones.
Consequences of a rejection:
• At variety level: most modern varieties of tomatoes and
many sweet pepper, lettuce, cereal and courgette varieties
were bred using this type of technique and would be ruled
out for organic agriculture.
• At breeding level: very time-consuming alternatives.
Alternatives:
Instead of embryo culture much more crossings would
have to be carried out. Instead of 50 crosses, more than 1000
would need to be done to get a few viable seeds. Alternatively,
different parents should be selected from stocks or the wild
accessions.
11
«In vitro» pollination
Approach:
In crosses, for example between a cultivar and its wild rel-
ative, fertilisation sometimes fails, either because the pollen
won't germinate or because it can't get to the ovary. Sometimes
pollination and fertilisation can be achieved «in vitro». Ovaries
or ovules are removed from the plants under sterile laboratory
conditions and fertilised «in vitro» with pollen. Fertilisation
barriers between the stigma and the ovary can thus be over-
come.
The cut style and grafted style methods (see «cut style» and
«grafting on the style») are also used «in vitro». However,
rather than being carried out on the whole plant they are car-
ried out on isolated ovules cultured in a test tube or petri dish.
Application:
The technique is usually applied at the beginning of a
breeding programme which is aimed specifically at introduc-
ing a certain character, for example a resistance gene from a
(wild) closely related species, into a cultivar. More genetic
combinations can be made than was previously possible.
However, the method has a low success rate, although this does
depend strongly on the species used and the combinations
made. It is mostly used for ornamental breeding.
Pros and Cons:
Pros: -improve the chances of overcoming natural barriers of
crossing that could rarely occur in nature.
Cons: -forced crossing of natural barriers in artificial and
sterile conditions.
Consequences of a rejection:
• At variety level: some varieties of ornamentals would have
to be ruled out. It is not clear if the history of «critical»
varieties can be traced back.
• At breeding level: a rejection of this technique would be a
minor restriction because there are alternative techniques.
Alternatives:
The techniques «cut style» and «grafting on the style»
could replace the «in vitro» pollination.
female
sexual organs
isolated ovaries
A
A
B
B
embryo
embryo
ovary
culture
phytohormones
embryo
culture
12
Protoplast/Cytoplast fusion
Approach:
Protoplasts are cells without a cell wall. These are obtained
by treating fragments of leaves with cell wall dissolving
enzymes. The protoplasts then grow a cell wall again and
divide, resulting in a callus from which plants can regenerate.
Protoplasts of different plant species can be fused with chemi-
cal or electric stimuli (somatic hybridisation). During this
fusion, the organelles of both plants (chloroplasts and mito-
chondria) are combined, while in crosses, only maternal
chloroplasts and mitochondria are passed on to the progeny.
The resulting tetraploid fusion product has the characteristics
of both parent species. During regeneration the chromosomes
and the organelles of both parents may be mixed, so that many
combinations are produced. To avoid exchange of chromo-
somes, protoplasts can be treated in such a way that the nucle-
us is removed or fragmented. These so-called cytoplasts do
contain the organelles, but not the chromosomes of the donor
plant. In this way CMS (cytoplasmic male sterility) can be
transferred to other plant species. Breeding companies use dif-
ferent plant sources of CMS and have patents on the applica-
tion of these kinds of CMS by describing the associated DNA
changes in mitochondrial genome.
Application:
In combining the maternal and paternal organelles, new
combinations are made. An example is male sterility, which is
determined by organelles (mitochondria). This method was
used to transfer natural cytoplasmic male sterility (CMS) of
radish CMS to cabbage and of sunflower CMS to chicory. After
fusion, selection is directed at the cytoplasmic characteristic.
The protoplast method is used to insert complete chromo-
some fragments from an other less related species into a culti-
var.
cut leave
enzyme treatment
to dissolve cell walls
proto-
plasts
chemical or
electric stimuli
cell fusion
nucleus fusion
Polyploidisation
Approach:
A plant cell typically has two copies of each chromosome
(diploid). A cell is polyploid if it has at least twice the normal
number of chromosomes (tetraploid). Polyploidy can occur
spontaneously or can be induced using chemicals such as
colchicine. Normally, during cell division the spindle in the cell
ensures that each half of the set of chromosomes is reorgan-
ised into two new cells. Colchicine dissolves the spindle, so that
the chromosomes remain in one cell and then duplicate
(tetraploid cell). When small meristems or seed are treated
with colchicine, they are likely to grow into a plant with a
completely doubled genome.
Application:
Doubling the number of chromosomes is sometimes nec-
essary to restore the fertility of plants obtained through species
crosses or haploidisation. However, polyploidisation is also
applied to get plants with a double set of chromosomes (pota-
toes, clover, forrage grasses, ornamentals). These plants are
generally larger or more robust than plants with the normal
number of chromosomes. They may therefore be more pro-
fitable or have a higher ornamental value.
Pros and Cons:
Pros: -easy way to restore fertility of plants and to get larger
and more robust varieties.
Cons: -use of a toxic substance (colchicine).
Consequences of a rejection:
• At variety level: since it is difficult to trace back the origin
of the genome duplication, either spontaneous or chemi-
cally-induced, it is difficult to judge polyploid varieties.
However, for some crops it is known that colchicine was
used to develop parent lines (e.g. potatoes with Pallida
resistance or tetraploid grasses).
• At breeding level: without polyploidisation it will be diffi-
cult to restore fertility of some plant species.
Alternatives:
If necessary spontaneous polyploids can be selected for the
desired crop or ornamental.
colchicine
dissolves
spindles
diploid
normal cell division
2 diploid
cells
tetraploid
13
Pros and Cons:
Pros: -rapid way to get new combinations and traits which
would not be possible in nature.
Cons: -natural barriers are forced with this method which is
closely related to genetic engineering.
Consequences of a rejection:
• At variety level: only a few modern cabbage, endive, leek,
and chicory varieties would be ruled out for organic agri-
culture if this technique was forbidden for organic plant
breeding.
• At breeding level: protoplast fusion is not of great impor-
tance, yet. Goals of organic plant breeding can be achieved
without it. Cytoplast fusion is of great importance to
induce CMS.
Alternatives:
A hybrid breeding program for cabbage could also be
based on the self-incompatibility (hinders self-fertilisation) of
some cabbage species.
protoplasts
cell fusion
cells without nucleus
(cytoplasts)
chemical or
electric stimuli
new!
After fusion protoplasts are regenerated (green cultures).
Protoplasts of tobacco.
Photos:MichelHaring,UniversityofAmsterdam
14
Mass selection
Approach:
Mass selection is based on the ability to recognise desirable or undesirable traits
in plants of a population. What appear to be the best plants are maintained in bulk
(positive mass selection), while plants with too little of the desired characteristic are
eliminated (negative mass selection). Since selection is based on phenotype, the tech-
nique is particularly effective for traits which are barely influenced by environmental
factors and which are not inherited as dominant or recessive traits but rather as com-
plex traits.
Application:
The technique is mostly applied during the early stages of a breeding programme,
when there is not enough representative plant- or seedstock for repeated testing,
when seedstock needs to be improved, or when little capital is available for a breed-
ing programme. However, breeding based only on mass selection is a lengthy process.
This is the selection method that most resembles natural selection.
Techniques for selection at the plant/population level
Mass selection: salads are selected for different
criteria (e.g. disease resistance) on test plots in
the field.
Marker-assisted selection: evaluation of an
autoradiogram of a gel with DNA markers
(see page 18).
Photo:LouisBolkInstitutePhoto:MichelHaring
15
Pedigree selection
Approach:
In pedigree selection, elite plant lines are developed from a
single plant. Each selected plant is harvested separately and
grown as distinct lines in the following year. Lines will only be
maintained following a favourable assessment of performance
throughout the line. The best plants of the line will be identi-
fied and their seed will again be harvested separately for the
next round. The selection is made on the basis of general
impressions (phenotype) and heredity of the desired charac-
teristics (genotype).
Application:
The pedigree method involves visual selection among indi-
vidual plants in early generations. Because the pedigree
method uses selection in each generation, each generation
must be grown in an environment where genetic differences
will be expressed (greenhouses and off-season nurseries may
not be useful). Pedigree selection produces new cultivars faster
than mass selection. The method is particularly appropriate
for self-pollinators.
Site-determined selection
Approach:
The goal of this selection method is to select varieties,
sometimes population varieties, which are optimally adapted
to specific regional conditions. The parent lines are also select-
ed with the final growing site (region) of the crop in mind.
Crosses are carried out at a central location, where the F1 and
early generations (F2 to F4) are also sown. The F5 to Fn plants
are assessed and selected at different locations by means of
pedigree selection. This is a combination of natural selection
and artificial selection. In other words, environmental factors
determine which characteristics are expressed and which are
not and this may influence the breeder's selection of promis-
ing phenotypes.
Application:
This method is applied especially in «organic» breeding
programmes for cereals such as wheat, barley, rye and spelt.
However, in theory it is also suitable for use with other crops.
site adapted varieties
A‫ן‬B A‫ן‬B
F1
F2
F3
F4
Fn
F1–4
F5
F6
Fn
16
Ear-bed method
Approach:
An ear-bed is a seedbed in which the
grains from one ear are sown in the
same sequence in which they were
arranged in the ear. Thus the plants in
the seedbed (ear-bed) reflect the quality
of the original ear.
Application:
This breeding method was devel-
oped by bio-dynamic plant breeders
especially for cereals, but it may also be
used for other crops.
2 3 4 5 6 7 8 9 101 11 1213 14 15 16 17 1819 20 21 22 23 24
Change in sowing time
Approach:
A change in the sowing time (early
and late spring; early or late autumn) is
usually applied to select for day-length
insensitivity, reduced vernalisation
requirement, and yield and quality sta-
bility in different length of growth peri-
od.
Application:
This method can be used in self-
and cross-pollinating crops.
Some bio-dynamic breeders consid-
er this method to improve seed quality.
It is especially used in cereals.
Change in environment
Approach:
Change of environment during the
selection process is also called shuttle
breeding. This method is used to select
broadly adapted genotypes out of segre-
gating populations.
Application:
This method can be used for self-
and cross-pollinating crops.
Some bio-dynamic breeders also use
this technique to induce variation and
even to enhance the vigour of a variety.
different geographical regions
different soil types spring autumn
17
Test crosses
Approach:
Promising parental genotypes are
crossed with a number of other known
genotypes. Progeny is grown separately
and assessed for the desired characteris-
tics. The measurements are used to
determine General Combining Ability
(GCA) and Specific Combining Ability
(SCA), and these are needed if effective
crosses are to be made.
Application:
In breeding, it is not enough merely
to select the best cultivars, but parents
with good crossing ability must also be
available, so that a number of impor-
tant characteristics are combined and
passed on to progeny. This is especially
crucial for asexually propagated plants
and hybrids. Test crosses are asking
extensive testing facilities and are time
consuming. However, they are an
investment in the future.
seeds after sowing in growing
mutagenesis a selective medium of tolerant mutants
«In vitro» selection
Approach:
«In vitro» selection uses somaclonal variation or mutation induction to select
plants with new traits. For example, to obtain plants with a high tolerance to salt,
selection occurs in a saline environment. This can be done by treatment of individ-
ual plant cells that are growing in tissue culture or by treatment of seeds and subse-
quent germination on selective growth medium. Selection for resistance to diseases
and pests can also be carried out «in vitro». The pathogen, or a toxin produced by the
pathogen, is applied to the plants under controlled conditions.
Application:
This technique is used to screen many plants or cells for one specific characteris-
tic. It is a sort of pre-selection to reduce the number of plants to be tested in the field.
After «in vitro» selection plants are always tested under field circumstances to observe
the expression of the characteristics in the open field. Plants resulting from this selec-
tion process may be marketed directly as a new variety (after «in vitro» multiplica-
tion) or they may be used as a parent in further breeding programmes.
Pros and Cons:
Pros: -cheap way to pre-select plants and reduce the number of plants to be tested
in the field.
Cons: -the artificial and sterile conditions in the laboratory do not help to select for
organic conditions.
Consequences of a rejection:
• At variety level: some varieties of different crops would be ruled out for organic
agriculture if this technique were to be prohibited in organic breeding. «In vitro»
selection can not be identified in the product and can therefore not be controlled.
• At breeding level: more time-consuming selections in the field would be needed.
Alternatives:
Similar selection for specific characters could be done with the above mentioned
techniques of selection in the field, but they are much more time consuming. On the
other hand, selection in the field helps to find plants adapted to a broader range of
environmental factors.
Techniques for selection at the cell/tissue level
A‫ן‬B A‫ן‬C A‫ן‬D
F1 no good F1 no good F1
A‫ן‬B: good SCA
A: bad GCA
18
Marker-assisted selection
Approach:
Biochemical and molecular techniques are often used in
direct selection. Polymorphism of plants is fixed at different
levels: the molecular, biochemical, and phenotypic level. On
biochemical level some plant proteins (enzymes) can have a
slightly different composition in different plant varieties and
can be visualised as different banding patterns (isozymes). By
genetic analysis a certain band can be linked to a desirable trait
(yield, taste, resistance). When this linkage is established, the
presence of the marker (isozyme band) in a breeding line sug-
gests that the linked trait is also present.
Similarly, the variation in the DNA sequence around a gene
or genes determining a desired trait can be revealed by isolat-
ing the DNA and making parts of the DNA base sequence vis-
ible. Visualisation techniques all require a treatment of DNA
with restriction enzymes and radio-active or fluorescent labels.
These enzymes are naturally occuring in bacteria and can be
isolated from them. Today, they are usually produced as
recombinant proteins. These are indistinguishable from non-
recombinant enzymes and can be isolated at a fraction of the
costs. The resulting banding pattern of the different DNA
fragments is used to find those bands which are linked to the
desired characteristic of a plant. This tool does not rely on the
introduction of transgenic DNA into the plant, but analyses
the DNA content of individual progeny to preselect for the
presence of known traits.
Application:
Molecular markers can be used for a particular DNA seg-
ment which is linked to a trait of interest. Traits can be caused
by single gene or be due to a number of genes. The aim of
marker-assisted breeding is to speed up selection and to direct-
ly select for traits. In the future, large populations could first be
screened for the presence of known markers (i.e. traits), before
being used in field plots. A prerequisite for marker-assisted
selection is that a marker is found that is closely linked to a
desired characteristic. It requires an extensive genetic mapping
programme before this technique can be used in a breeding
programme. The molecular markers that are developed by
breeding companies are often patented to prevent the compe-
tition from developing the same traits. This technique is
increasingly used in breeding programmes for all crops.
Pros and Cons:
Pros: -efficient and less time consuming selection.
-allows the pyramidisation of resistance genes for
better resistance.
Cons: -reduces the plant to a subset of DNA sequences
-use of toxic substances.
Consequences of a rejection:
• At variety level: at the moment, modern plant breeding
uses this tool for selection with the goal to improve breed-
ing in terms of time and costs. However, only a few vari-
eties selected with this technique are on the market.
• At breeding level: the application of marker-based selec-
tion cannot be identified in the product and can therefore
not be controlled.
Alternatives:
As soon as markers for important characteristics are found,
this tool will help to make selection more efficient and less
time consuming. However, most techniques of selection can
replace marker-based selection, provided that there are no
financial and infrastructural restraints.
GAATTC GAATTC GAATTC GAATTC GTATC GAATTC
Techniques for selection at the DNA level
DNA sequence variety A
restriction enzyme cutting DNA sequence G–A
AA Aa aa
genotype
DNA sequence variety B
marker for a
marker for A
elite hybrid parent
two DNA fragments
linked with trait A
one DNA fragment
linked with trait a
wild species
selected with DNA marker
selected with DNA marker
selected with DNA marker
new hybrid parent
1/10
1/50
1/100
19
variety A breeders seed
pre-basic seed
basic seed
certified seed
Multiplication of sexually
reproducing plants
Approach:
When a new variety has been select-
ed out of the new genetic variation, it
must be propagated and maintained as
a pure bred. In self-pollinating and
cross-pollinating plants, the selected
genotypes flower in isolation. Positive
mass selection ensures that the elite par-
ent lines are of high quality and meet all
the requirements of a variety. Not all
diseases in parent plants are passed on
to seed, but some seedborne diseases
like Alternaria on carrots and Common
bunt on wheat need special attention.
Most seed can be stored for long peri-
ods of time.
Application:
Used for all sexually reproducing
plants.
Techniques for multiplication at the plant/population level
Multiplication of asexually
reproducing plants
Approach:
In asexually propagated plants, such
as beets, potatoes, bulbs or grafted
plants, extra care must be taken to avoid
deterioration in the health of the seed
or plant stock. Living plant stock often
does not keep well, thus these lines are
maintained through a continuous pro-
cess of multiplication. However, the ad-
vantage of vegetative multiplication is
that the progeny has exactly the same
genotype as the parent, whether hetero-
zygous or homozygous.
Application:
Used for all asexually reproducing
plants.
Multiplication of apple seedlings.
«In vitro» multiplication of sugar beets.
Meristem culture of sugar beet in petridishes.
Photo:MarkusKellerhals,FAWPhotos:GunillaLissek-Wolf
20
«In vitro» multiplication
Approach:
Depending on the plant species, some part of a plant -
most commonly a piece of stem with an axillary bud, or part
of a leaf or bulb scale – is cultured «in vitro». These sections of
plant grow out to form shoots, which can in turn be cut and
propagated. This may be repeated several times to get enough
plants. These are grown until their roots are developed, then
hardened off and transferred to normal greenhouse and/or
field conditions.
Application:
This method is often used to get enough basic material to
be able to bring a new variety on the market. In addition, this
technique is being used more regularly to maintain parent
lines of hybrids.
Pros and Cons:
Pros: -cheap and rapid way to multiply great numbers of
plants.
Cons: -the sterile and artificial conditions could lead to a
selection for laboratory conditions.
Consequences of a rejection:
• At variety level: some varieties of cut flowers and leek
hybrids would be ruled out.
• At multiplication level: more expensive and time-consum-
ing techniques have to be applied.
Alternatives:
For most crops there are other multiplication methods
which are quite effective.
Techniques for multiplication at the
cell/tissue level
F1 F1
F 2 F 2–Fn
Apomixis
Approach:
Some species can reproduce asexually through seeds. This
phenomenon is called apomixis. In the seed forming process ,
meiosis that is essential for sexual reproduction, is either sup-
pressed or circumvented so that the embryo is genetically
identical to the mother plant. There are obligate apomicts,
whose seed contains apomictic embryos, and facultative
apomicts, which can form both sexual and apomictic embryos
in their seeds.
Application:
Apomixis occurs in cultivated plants (Poa pratensis,
oranges, tropical plants) and wild plants and has caught breed-
ers' interest because it combines the advantages of seed multi-
plication - health and maintenance of quality - with the iden-
tical reproduction of the maternal genotype. Apomictic multi-
plication is considered a promising method to maintain vari-
eties and to fix the heterosis effect of hybrids. The technique is
hardly used in today's plant breeding but, with the help of
genetic engineering the technique is expected to become avail-
able for a large number of crop species in the near future.
21
Somatic embryogenesis
Approach:
Somatic embryos are created from a piece of plant materi-
al isolated from the mother plant and may or may not first
have undergone a callus phase. Callus, which is commonly
propagated in liquid medium, is homogenised to form a cell
suspension. Plant hormones are added to the cells isolated
from the mother plant, the callus or the cell suspension to
stimulate the cells' development into somatic embryos. Often,
these embryos are in turn capable of forming secondary
embryos, thus leading to a continuous multiplication process.
From these embryos a new plant can be regenerated «in vitro».
Application:
This method has the greatest multiplication potential and
is less labour intensive compared to other «in vitro» multipli-
cation methods. The method can be used for large-scale or
even automated production.
Pros and Cons:
Pros: -very cheap and rapid way to multiply great numbers
of plants.
Cons: -the sterile and artificial conditions could lead to a
selection for laboratory conditions.
-use of synthetic phytohormones.
-risk of spontaneous mutations.
Consequences of a rejection:
• At variety level: many varieties of cut flowers would be
ruled out.
• At multiplication level: more expensive and time-consum-
ing techniques have to be applied.
Alternatives:
For most crops there are other multiplication methods
which are quite effective.
Meristem culture
Approach:
In meristem culture, parts from the meristem are isolated
and cultured on substrate. The resulting plants are screened
for viruses with the ELISA method. Uninfected plants are then
propagated in the manner described previously.
Application:
Meristem culture often is the only way to get virus-free
plant material (e.g. berries, bulbs, potatoes). Viruses can be
especially persistent in asexually propagated plants, because
they are passed on to the following year's stock (e.g. garlic).
Viruses proliferate and spread through the plant, but they
never quite catch up with the rapidly dividing cells in the plant
meristem. This method is widely used for multiplication of
fruit rootstock, transplants of berries, flower bulbs, and veg-
etables.
Pros and Cons:
Pros: -best and often only way to get virus-free plants.
Cons: -use of synthetic phytohormones.
Consequences of a rejection:
• At variety level: most rootstocks of fruits and transplants of
berries and many vegetable varieties would be ruled out.
• At multiplication level: new techniques would have to be
developed.
Alternatives:
If just the youngest parts of plants are used for multiplica-
tion, virus-free multiplication should also be possible using
standard multiplication methods.
callus callus
growing culture
callus development «in vitro»
of somatic embryos shoot
22
If guidelines and guide-posts are to be developed for organ-
ic plant breeding then the suitability of breeding and multi-
plication techniques must be evaluated. Discussion on national
and international level showed that in order to do this, criteria
for evaluation must be set (Wiethaler et al., 2000). Criteria could
be derived from the basic principles of organic agriculture and
translated to plant breeding. The Louis Bolk Institute has
worked out a suggestion for such criteria (Lammerts van Bueren
et al., 1999). The authors of this suggestion used three basic
principles in organic agriculture as a starting point:
● closed production cycles
● natural self regulation
● biodiversity
In order to draw up a framework for an organic breeding
system these principles could be extrapolated to the level of
plants. The three criteria for organic plant breeding then are:
● natural reproductive ability of plants
● ability to adapt to organic conditions
● genetic diversity with respect for natural species authenticity
and species characteristics.
As breeding is also a socio-economic activity these principles
could also be applied to the socio-economic level:
● close interaction between farmers, breeders, traders, and
consumers for a participative plant breeding
● regulations incorporating organic principles
● cultural diversity: diverse breeding programmes as a prere-
quisite for genetic diversity. This includes free exchange of
varieties among breeders. Therefore, plants should be main-
tained with an ability to pass on genes to future breeding
programmes. This includes production of fertile seeds and
the prevention of patenting varieties.
On the basis of these principles, plant and crop based breed-
ing techniques best suit an interactive organic breeding system.
These principles would lead to breeding techniques allowing the
whole breeding process to take place under organic (soil) con-
ditions. This creates an ethical dilemma. Does that imply that
the smallest living entity to work with in organic breeding
programmes is the plant or the crop? Or, is the plant cell the
smallest living entity because it can regenerate into a plant again
or do we want to reduce life to the complexity of heritable mate-
rial, the DNA? Table 2 considers the suitability of breeding and
multiplication techniques for organic plant breeding based on
three ethical interpretations of the smallest living entity – the
plant, the cell, or the DNA.
The result of judging the techniques from these different
points of view would have quite different consequences for the
actual seed availability of the most important crop groups:
● plants as the smallest living entity: some few cereal varieties,
many vegetable varieties (e.g. tomato, sweet pepper, lettuce,
cabbage), some fruit and vine varieties, some forrage crop
varieties, and many ornamental plants would be rouled out.
● cells as the smallest living entity: just some few vegetable
varieties (e.g. cabbage) and in the future potato and maize
varieties would have to be rouled out.
● DNA as the smallest living entity: no consequences for the
seed availability.
However, if restrictions for one or the other technique are
made, it still has to be decided
● whether the use of all varieties once bred with these tech-
niques should be prohibited (also as breeding material)
● or restrictions are made only for future cultivars and breed-
ing programmes.
In addition, any regulation has to distinguish clearly
between allowed and not allowed techniques and these differ-
ences must be controllable. An additional possibility to enhance
the «quality» of organic plant breeding would be to certify
breeders following a defined organic plant breeding pro-
gramme.
The organic movement needs to find a clear and feasible way
to define organic plant breeding with the aim to promote and
accelerate the production of suitable plants for a sound organic
agriculture.
Judging the suitability
of the breeding and multiplication techniques
for organic agriculture
References
Lammerts van Bueren, E. T., Hulscher, M., Haring, M., Jongerden, J., van
Mansvelt, J.D., den Nijs, A. P. M. and Ruivenkamp, G. T. P. (1999)
Sustainable organic plant breeding. Final report: a vision, choices, con-
sequences and steps. Louis Bolk Institute, Driebergen. 59 pp.
Wiethaler, C., Opperman, R. and Wyss, E. (2000) Organic plant breeding
and biodiversity of cultural plants. Reports on the international confer-
ences. Naturschutzbund Deutschland and Research Institute of Organic
Agriculture. 115 pp.
23
Colours and arrows give the «degree of suitability»: = no problem, = ok, = not suitable but
provisionally allowed, = not suitable.
Table 2: Judgement of breeding and multiplication techniques considering either the plant, or the
cell, or the DNA to be the smallest living entity.
Smallest living entity
Inducing variation Plant Cell DNA
Combination breeding, Crossing varieties, Bridging cross,
Repeated back-crossing, Cutted/grafted style, Temperature
treatment of the style
F1 hybrid breeding, Unradiated mentor pollen technique
Ovary/embryo culture, «In vitro» pollination, Anther/Microspore culture
Polyploidisation, Somaclonal variation
Hybridisation for CMS without restorer gene, Radiated mentor pollen technique
Protoplast fusion
Genetic engineering (is already prohibited)
Selection Plant Cell DNA
Mass selection, Pedigree selection, Site determined selection,
Change in environment, Change in sowing time, Ear bed method
Test crosses
«In vitro» selection
Marker-assisted selection
Multiplication Plant Cell DNA
Generative multiplication
Vegetative multiplication
Apomixis
Meristem culture
«In vitro» multiplication, Somatic embryogenesis
Imprint
Editor: Research Institute of Organic Agriculture (FiBL), Ackerstrasse,
P.O. Box, CH-5070 Frick, Phone: +41 (0)62 865 72 72, Fax: +41 (0)62
865 72 73, E-mail: admin@fibl.ch, Homepage: www.fibl.ch
Research Institute of Organic Agriculture (FiBL) Berlin e.V., Rungestrasse
19, D-10179 Berlin, Phone: +49 (0)30 27 58 17 50, Fax: +49 (0)30 27
58 17 59, E-mail: Berlin@fibl.de
Authors: Eric Wyss (FiBL, Frick), Edith Lammerts van Bueren (Louis Bolk
Institute, Driebergen), Marjolein Hulscher (Louis Bolk Institute,
Driebergen), Michel Haring (University of Amsterdam)
Co-authors: Christine Arncken-Karutz (FiBL, Frick), Robert Haward (Soil
Association, Bristol), François Lhopiteau (Institut Technique pour
l’Agriculture Biologique, Paris), Eckard Reiners (Bioland Association
Germany, Member of the Standards Committee of IFOAM), Klaus-Peter
Wilbois (FiBL, Berlin)
Collaboration: Beat Keller (University of Zurich), Jos van Damme
(Netherlands Institute of Ecology, Heteren), Peter van Dijk (Netherlands
Institute of Ecology, Heteren), Michael Winzeler (Federal Research
Station for Agroecology and Agriculture, Zurich-Reckenholz)
Editorial staff: Thomas Alföldi (FiBL, Frick)
Graphics: Daniel Gorba (FiBL, Frick)
Translation: Robert Haward (English version), Manuel Perret (French
version), Jessamjin Miedema and Anne Bruinsma (Dutch version), Eric
Wyss and Markus Bär(German version)
Cover photographs: Emasculation of a flower of cauliflower, Jan Velema
(Vitalis Biologische Zaden BV)
This dossier is available in English, German, French, and Dutch
Price: 5 Euro ISBN Nr. 3-906081-13-3
Sale: FiBL © FiBL
Allele One member of a pair or series of genes
that occupy a specific position on a spe-
cific chromosome, the «form» in which a
gene can occur in a plant.
Callus A callus is proliferating tissue consisting
of non-differentiated cells.
Chloroplasts The green organelles of a plant cell that
fix carbondioxide using solar energy:
photosynthesis. This provides the plant
with energy carriers like sugars and ATP.
They have their own DNA, which is pre-
dominantly inherited from the mother,
but they still rely on genetic material
stored in the nucleus.
Chromosome A chromosome is a continuous strand of
duplex DNA, containing many genes.
Most multicellular organisms have sever-
al chromosomes, which together com-
prise the genome. Sexually reproducing
organisms have two copies of each chro-
mosome, one from the each parent.
Cross-pollination The transfer of pollen from one plant to
the flowers of a different plant.
Cytoplasm The interior of a plant cell harbours many
compartments: the nucleus, mitochon-
dria, chloroplasts, vacuoles and many
vesicular structures. The fluid cell in
between these compartments is called the
cytoplasm.
DNA DNA (deoxyribonucleic acid) is a double-
stranded helix of nucleotides which car-
ries the genetic information of a cell. It
encodes the information for the produc-
tion of proteins and is able to self-repli-
cate.
Enzyme Enzymes are proteins that carry out bio-
chemical reactions (or act as catalysts)
inside the cell.
Gel electrophoresis DNA is fragmented by restriction
enzymes (molecular scissors) and trans-
ferred to an agarose gel. The DNA frag-
ments move through the gel due to the
electric field applied to the gel. The length
of a DNA fragment determines its speed
of movement through the gel. The result-
ing banded pattern of slow-moving and
fast-moving DNA fragments is used to
identify those DNA bands which are
linked to the desired trait of a plant.
Gene A gene is a hereditary unit that can be
assigned of a sequence of DNA which
occupies a specific position or locus in the
genome. A gene codes for a protein or
RNA which is responsible for (part of) a
certain trait.
Genotype The genotype of an individual is the
genetic make-up, determined by the alle-
les present on its chromosomes.
Heterosis It’s the result of cross breeding two differ-
ent and distant related plants of the same
species. The offspring are more vigorous
and often more disease resistant.
Heterozygous Heterozygous means an organism has two
different alleles on its homologous chro-
mosomes.
Homozgous An organism is homozygous if it has the
same allele on both of its homologous
chromosomes.
Isozyme All proteins with similar enzymatic activ-
ity.
Marker DNA fragment that is polymorphic in size
or sequence. It can be used to differentiate
between genetic material of varieties and
species that are used in crosses.
Mitochondria Mitochondria are the organelles inside
cells where aerobic respiration occurs.
They have their own DNA which is pre-
dominantly inherited from the mother,
but they still rely on genetic material
stored in the nucleus.
Phenotype The phenotype is the combination of the
observable characteristics of an organism.
This should reflect the genotype, which is
an organisms genetic composition. The
phenotype results from the interaction of
the genotype with the environment.
Polyploidy The chromosomal constitution of a cell
containing multiples of the normal num-
ber of chromosomes.
Protein The translation product of a gene. It can
be visualized as a string of aminoacids,
which are ordered through the definition
of the genetic code of a particular gene.
Protoplast Isolated protoplasts are «naked» cells
because the cell wall has been removed by
either a mechanical or an enzymatic
process.
RNA RNA (ribonucleic acid) is the messenger
molecule that is transcribed from a gene
and subsequently translated into protein.
Self-pollination The transfer of pollen from the anther to
the style of the flower of same plant,
resulting in «selfing» of a breeding line.
Glossary

More Related Content

What's hot

Heterosis concepts
Heterosis conceptsHeterosis concepts
Heterosis concepts
deepakigkv
 
Breeding methods in cross pollinated crops
Breeding methods in cross pollinated cropsBreeding methods in cross pollinated crops
Breeding methods in cross pollinated crops
Dev Hingra
 
CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...
CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...
CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...
ICARDA
 

What's hot (20)

Credit seminar Pre Breeding.pptx
Credit seminar Pre Breeding.pptxCredit seminar Pre Breeding.pptx
Credit seminar Pre Breeding.pptx
 
Breeding methods in cross pollinated crops with major emphasis on population ...
Breeding methods in cross pollinated crops with major emphasis on population ...Breeding methods in cross pollinated crops with major emphasis on population ...
Breeding methods in cross pollinated crops with major emphasis on population ...
 
Breeding methods in cross pollinated crops
Breeding methods in cross pollinated cropsBreeding methods in cross pollinated crops
Breeding methods in cross pollinated crops
 
Pre breeding
Pre breedingPre breeding
Pre breeding
 
Biometrical Techniques in Plant Breeding
Biometrical Techniques in Plant Breeding Biometrical Techniques in Plant Breeding
Biometrical Techniques in Plant Breeding
 
Breeding of self pollinated crops
Breeding of self pollinated cropsBreeding of self pollinated crops
Breeding of self pollinated crops
 
Speed breeding presentation
Speed breeding presentationSpeed breeding presentation
Speed breeding presentation
 
19. inbred lines development
19. inbred lines development19. inbred lines development
19. inbred lines development
 
Marker assisted backcross breeding
Marker assisted backcross breedingMarker assisted backcross breeding
Marker assisted backcross breeding
 
Population breeding in self pollinated crops
Population breeding in self pollinated cropsPopulation breeding in self pollinated crops
Population breeding in self pollinated crops
 
Bulk method pedigree method &line breeding
Bulk   method pedigree  method &line breedingBulk   method pedigree  method &line breeding
Bulk method pedigree method &line breeding
 
Self incompatibility in hybrid seed production
Self incompatibility in hybrid seed productionSelf incompatibility in hybrid seed production
Self incompatibility in hybrid seed production
 
Wide hybridization
Wide hybridizationWide hybridization
Wide hybridization
 
Heterosis concepts
Heterosis conceptsHeterosis concepts
Heterosis concepts
 
Stability analysis and G*E interactions in plants
Stability analysis and G*E interactions in plantsStability analysis and G*E interactions in plants
Stability analysis and G*E interactions in plants
 
Rohit karode
Rohit karodeRohit karode
Rohit karode
 
Heterotic pools
Heterotic poolsHeterotic pools
Heterotic pools
 
Ammi model for stability analysis
Ammi model for stability analysisAmmi model for stability analysis
Ammi model for stability analysis
 
Breeding methods in cross pollinated crops
Breeding methods in cross pollinated cropsBreeding methods in cross pollinated crops
Breeding methods in cross pollinated crops
 
CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...
CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...
CIMMYT breeding strategies and methodologies to breed high yielding, yellow r...
 

Viewers also liked

plant breeding techniques used in self-pollinated plants v/s those used in cr...
plant breeding techniques used in self-pollinated plants v/s those used in cr...plant breeding techniques used in self-pollinated plants v/s those used in cr...
plant breeding techniques used in self-pollinated plants v/s those used in cr...
Anusha Babooa
 
Breeding methods in cross pollinated crops
Breeding methods in cross pollinated cropsBreeding methods in cross pollinated crops
Breeding methods in cross pollinated crops
Dev Hingra
 
Breeding techniques in self pollinated crops presentation
Breeding techniques in self pollinated crops presentationBreeding techniques in self pollinated crops presentation
Breeding techniques in self pollinated crops presentation
Dev Hingra
 
Method of breeding
Method of breedingMethod of breeding
Method of breeding
nehavik
 
Plant Breeding Methods
Plant Breeding MethodsPlant Breeding Methods
Plant Breeding Methods
THILAKAR MANI
 

Viewers also liked (11)

Advance Plant Breeding Techniques
Advance Plant Breeding TechniquesAdvance Plant Breeding Techniques
Advance Plant Breeding Techniques
 
plant breeding techniques used in self-pollinated plants v/s those used in cr...
plant breeding techniques used in self-pollinated plants v/s those used in cr...plant breeding techniques used in self-pollinated plants v/s those used in cr...
plant breeding techniques used in self-pollinated plants v/s those used in cr...
 
Breeding methods in chick pea
Breeding methods in chick peaBreeding methods in chick pea
Breeding methods in chick pea
 
BREEDING APPROACHES FOR IMPROVEMENT OF TEMPERATE FRUIT CROPS
BREEDING APPROACHES FOR IMPROVEMENT OF TEMPERATE FRUIT CROPSBREEDING APPROACHES FOR IMPROVEMENT OF TEMPERATE FRUIT CROPS
BREEDING APPROACHES FOR IMPROVEMENT OF TEMPERATE FRUIT CROPS
 
Breeding methods in cross pollinated crops
Breeding methods in cross pollinated cropsBreeding methods in cross pollinated crops
Breeding methods in cross pollinated crops
 
Breeding methods for vegetables
Breeding  methods for  vegetablesBreeding  methods for  vegetables
Breeding methods for vegetables
 
Breeding self pollinated crops
Breeding self pollinated cropsBreeding self pollinated crops
Breeding self pollinated crops
 
Breeding techniques in self pollinated crops presentation
Breeding techniques in self pollinated crops presentationBreeding techniques in self pollinated crops presentation
Breeding techniques in self pollinated crops presentation
 
Method of breeding
Method of breedingMethod of breeding
Method of breeding
 
Plant breeding, its objective and historical development- pre and post mendel...
Plant breeding, its objective and historical development- pre and post mendel...Plant breeding, its objective and historical development- pre and post mendel...
Plant breeding, its objective and historical development- pre and post mendel...
 
Plant Breeding Methods
Plant Breeding MethodsPlant Breeding Methods
Plant Breeding Methods
 

Similar to Organic Plant Breeding Techniques

Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...
Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...
Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...
BhaskaraAnggarda1
 
North Carolina Organic Grain Guide 2013 - BOPS Coalition
North Carolina Organic Grain Guide 2013 - BOPS CoalitionNorth Carolina Organic Grain Guide 2013 - BOPS Coalition
North Carolina Organic Grain Guide 2013 - BOPS Coalition
RAFI-USA
 
Genetic enginnering introduction
Genetic enginnering introductionGenetic enginnering introduction
Genetic enginnering introduction
cbsua
 

Similar to Organic Plant Breeding Techniques (20)

Breeding techniques for organic agriculture.
Breeding techniques for organic agriculture.Breeding techniques for organic agriculture.
Breeding techniques for organic agriculture.
 
Plant Breeding Full PPT (secA)This is course material for plant breeding..pdf
Plant Breeding Full PPT (secA)This is course material for plant breeding..pdfPlant Breeding Full PPT (secA)This is course material for plant breeding..pdf
Plant Breeding Full PPT (secA)This is course material for plant breeding..pdf
 
Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...
Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...
Bhaskara1.In Situ Conservation of Agricultural Biodiversity Through Participa...
 
Characteristics Improvement in Plant Breeding
Characteristics Improvement in Plant BreedingCharacteristics Improvement in Plant Breeding
Characteristics Improvement in Plant Breeding
 
Presentation on population improvement
Presentation on population improvementPresentation on population improvement
Presentation on population improvement
 
Iraq
IraqIraq
Iraq
 
PLANT BIOTECHNOLOGY
 PLANT BIOTECHNOLOGY  PLANT BIOTECHNOLOGY
PLANT BIOTECHNOLOGY
 
Problems and Progress for Organic Seed Production
Problems and Progress for Organic Seed ProductionProblems and Progress for Organic Seed Production
Problems and Progress for Organic Seed Production
 
سيمينار المعهد
سيمينار المعهدسيمينار المعهد
سيمينار المعهد
 
CULTIVATION, COLLECTION, PROCESSING AND STORAGE OF DRUGS OF NATURAL ORIGIN.pptx
CULTIVATION, COLLECTION, PROCESSING AND STORAGE OF DRUGS OF NATURAL ORIGIN.pptxCULTIVATION, COLLECTION, PROCESSING AND STORAGE OF DRUGS OF NATURAL ORIGIN.pptx
CULTIVATION, COLLECTION, PROCESSING AND STORAGE OF DRUGS OF NATURAL ORIGIN.pptx
 
North Carolina Organic Grain Guide 2013 - BOPS Coalition
North Carolina Organic Grain Guide 2013 - BOPS CoalitionNorth Carolina Organic Grain Guide 2013 - BOPS Coalition
North Carolina Organic Grain Guide 2013 - BOPS Coalition
 
Prabhat MBB-602 Conventional versus non-conventional methods for crop improve...
Prabhat MBB-602 Conventional versus non-conventional methods for crop improve...Prabhat MBB-602 Conventional versus non-conventional methods for crop improve...
Prabhat MBB-602 Conventional versus non-conventional methods for crop improve...
 
State of Organic Seed (SOS) Report Part 2
State of Organic Seed (SOS) Report Part 2State of Organic Seed (SOS) Report Part 2
State of Organic Seed (SOS) Report Part 2
 
30032020194456Principles_of_Seed_Technology_Dr_Rudrasen_Singh.pdf
30032020194456Principles_of_Seed_Technology_Dr_Rudrasen_Singh.pdf30032020194456Principles_of_Seed_Technology_Dr_Rudrasen_Singh.pdf
30032020194456Principles_of_Seed_Technology_Dr_Rudrasen_Singh.pdf
 
Organic Cotton Production
Organic Cotton ProductionOrganic Cotton Production
Organic Cotton Production
 
organic farming
organic farming organic farming
organic farming
 
Application of molecular biology to conventional disease strategies ( M.Phil ...
Application of molecular biology to conventional disease strategies ( M.Phil ...Application of molecular biology to conventional disease strategies ( M.Phil ...
Application of molecular biology to conventional disease strategies ( M.Phil ...
 
Principles of vegetable seed production
 Principles of vegetable seed production  Principles of vegetable seed production
Principles of vegetable seed production
 
Genetic enginnering introduction
Genetic enginnering introductionGenetic enginnering introduction
Genetic enginnering introduction
 
The concept and purpose of plant breeding in the modern environment
The concept and purpose of plant breeding in the modern environmentThe concept and purpose of plant breeding in the modern environment
The concept and purpose of plant breeding in the modern environment
 

More from Seeds

More from Seeds (20)

Free Gardening Art Posters
Free Gardening Art PostersFree Gardening Art Posters
Free Gardening Art Posters
 
Seeds of Justice, Seeds of Hope
Seeds of Justice, Seeds of HopeSeeds of Justice, Seeds of Hope
Seeds of Justice, Seeds of Hope
 
Mahatma K. Gandhi Quotes
Mahatma K. Gandhi QuotesMahatma K. Gandhi Quotes
Mahatma K. Gandhi Quotes
 
Good Food Helps your Children Excel in School
Good Food Helps your Children Excel in SchoolGood Food Helps your Children Excel in School
Good Food Helps your Children Excel in School
 
Companion Planting Chart increases Vegetable Production
Companion Planting Chart increases Vegetable ProductionCompanion Planting Chart increases Vegetable Production
Companion Planting Chart increases Vegetable Production
 
Edible Schoolyards = Academic Success & Gardening with Children
Edible Schoolyards = Academic Success & Gardening with ChildrenEdible Schoolyards = Academic Success & Gardening with Children
Edible Schoolyards = Academic Success & Gardening with Children
 
Simple Square Foot Gardening for Schools - Teacher Guide
Simple Square Foot Gardening for Schools - Teacher GuideSimple Square Foot Gardening for Schools - Teacher Guide
Simple Square Foot Gardening for Schools - Teacher Guide
 
City Farming, Backyard Farming, & Urban Farming - , Resources, Links & Much More
City Farming, Backyard Farming, & Urban Farming - , Resources, Links & Much MoreCity Farming, Backyard Farming, & Urban Farming - , Resources, Links & Much More
City Farming, Backyard Farming, & Urban Farming - , Resources, Links & Much More
 
Horseback Riding Therapy, Natural Horse Care, Natural Pet Food, Natural Pet Care
Horseback Riding Therapy, Natural Horse Care, Natural Pet Food, Natural Pet CareHorseback Riding Therapy, Natural Horse Care, Natural Pet Food, Natural Pet Care
Horseback Riding Therapy, Natural Horse Care, Natural Pet Food, Natural Pet Care
 
City Beekeeping ~ Honey for Health ~ Resouces, Books & Much More
City Beekeeping ~ Honey for Health ~ Resouces, Books & Much MoreCity Beekeeping ~ Honey for Health ~ Resouces, Books & Much More
City Beekeeping ~ Honey for Health ~ Resouces, Books & Much More
 
Free Water Wise Gardening Handbooks & Drought Gardening, Manuals, Books & Muc...
Free Water Wise Gardening Handbooks & Drought Gardening, Manuals, Books & Muc...Free Water Wise Gardening Handbooks & Drought Gardening, Manuals, Books & Muc...
Free Water Wise Gardening Handbooks & Drought Gardening, Manuals, Books & Muc...
 
Free Xeriscape Gardening Manuals, Books, Resources & Much More
Free Xeriscape Gardening Manuals, Books, Resources &  Much MoreFree Xeriscape Gardening Manuals, Books, Resources &  Much More
Free Xeriscape Gardening Manuals, Books, Resources & Much More
 
City Chickens for your Organic Garden
City Chickens for your Organic GardenCity Chickens for your Organic Garden
City Chickens for your Organic Garden
 
Ram Water Pumps - Using No Fuel and No Electricity
Ram Water Pumps - Using No Fuel and No ElectricityRam Water Pumps - Using No Fuel and No Electricity
Ram Water Pumps - Using No Fuel and No Electricity
 
Huerto Ecológico, Tecnologías Sostenibles, Agricultura Organica
Huerto Ecológico, Tecnologías Sostenibles, Agricultura OrganicaHuerto Ecológico, Tecnologías Sostenibles, Agricultura Organica
Huerto Ecológico, Tecnologías Sostenibles, Agricultura Organica
 
City Farming - Backyard Farming - Urban Farming Books, Resources & Links
City Farming - Backyard Farming - Urban Farming Books, Resources & LinksCity Farming - Backyard Farming - Urban Farming Books, Resources & Links
City Farming - Backyard Farming - Urban Farming Books, Resources & Links
 
The Wicking Worm Bed Revolution for Drought Gardening
The Wicking Worm Bed Revolution for Drought GardeningThe Wicking Worm Bed Revolution for Drought Gardening
The Wicking Worm Bed Revolution for Drought Gardening
 
Garden Wicking Beds = Water Wise Gardening for Dry Lands & Summer Droughts
Garden Wicking Beds = Water Wise Gardening for Dry Lands & Summer DroughtsGarden Wicking Beds = Water Wise Gardening for Dry Lands & Summer Droughts
Garden Wicking Beds = Water Wise Gardening for Dry Lands & Summer Droughts
 
Self Watering Container Gardens for Summer Drought Gardening & Arid Lands
Self Watering Container Gardens for Summer Drought Gardening & Arid LandsSelf Watering Container Gardens for Summer Drought Gardening & Arid Lands
Self Watering Container Gardens for Summer Drought Gardening & Arid Lands
 
A Manual for Growing Food in Arid Lands & Summer Droughts
A Manual for Growing Food in Arid Lands & Summer DroughtsA Manual for Growing Food in Arid Lands & Summer Droughts
A Manual for Growing Food in Arid Lands & Summer Droughts
 

Recently uploaded

Making and Justifying Mathematical Decisions.pdf
Making and Justifying Mathematical Decisions.pdfMaking and Justifying Mathematical Decisions.pdf
Making and Justifying Mathematical Decisions.pdf
Chris Hunter
 
Seal of Good Local Governance (SGLG) 2024Final.pptx
Seal of Good Local Governance (SGLG) 2024Final.pptxSeal of Good Local Governance (SGLG) 2024Final.pptx
Seal of Good Local Governance (SGLG) 2024Final.pptx
negromaestrong
 
The basics of sentences session 3pptx.pptx
The basics of sentences session 3pptx.pptxThe basics of sentences session 3pptx.pptx
The basics of sentences session 3pptx.pptx
heathfieldcps1
 
Activity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdfActivity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdf
ciinovamais
 

Recently uploaded (20)

On National Teacher Day, meet the 2024-25 Kenan Fellows
On National Teacher Day, meet the 2024-25 Kenan FellowsOn National Teacher Day, meet the 2024-25 Kenan Fellows
On National Teacher Day, meet the 2024-25 Kenan Fellows
 
Making and Justifying Mathematical Decisions.pdf
Making and Justifying Mathematical Decisions.pdfMaking and Justifying Mathematical Decisions.pdf
Making and Justifying Mathematical Decisions.pdf
 
Basic Civil Engineering first year Notes- Chapter 4 Building.pptx
Basic Civil Engineering first year Notes- Chapter 4 Building.pptxBasic Civil Engineering first year Notes- Chapter 4 Building.pptx
Basic Civil Engineering first year Notes- Chapter 4 Building.pptx
 
Energy Resources. ( B. Pharmacy, 1st Year, Sem-II) Natural Resources
Energy Resources. ( B. Pharmacy, 1st Year, Sem-II) Natural ResourcesEnergy Resources. ( B. Pharmacy, 1st Year, Sem-II) Natural Resources
Energy Resources. ( B. Pharmacy, 1st Year, Sem-II) Natural Resources
 
Seal of Good Local Governance (SGLG) 2024Final.pptx
Seal of Good Local Governance (SGLG) 2024Final.pptxSeal of Good Local Governance (SGLG) 2024Final.pptx
Seal of Good Local Governance (SGLG) 2024Final.pptx
 
Holdier Curriculum Vitae (April 2024).pdf
Holdier Curriculum Vitae (April 2024).pdfHoldier Curriculum Vitae (April 2024).pdf
Holdier Curriculum Vitae (April 2024).pdf
 
The basics of sentences session 3pptx.pptx
The basics of sentences session 3pptx.pptxThe basics of sentences session 3pptx.pptx
The basics of sentences session 3pptx.pptx
 
Activity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdfActivity 01 - Artificial Culture (1).pdf
Activity 01 - Artificial Culture (1).pdf
 
Nutritional Needs Presentation - HLTH 104
Nutritional Needs Presentation - HLTH 104Nutritional Needs Presentation - HLTH 104
Nutritional Needs Presentation - HLTH 104
 
Web & Social Media Analytics Previous Year Question Paper.pdf
Web & Social Media Analytics Previous Year Question Paper.pdfWeb & Social Media Analytics Previous Year Question Paper.pdf
Web & Social Media Analytics Previous Year Question Paper.pdf
 
Application orientated numerical on hev.ppt
Application orientated numerical on hev.pptApplication orientated numerical on hev.ppt
Application orientated numerical on hev.ppt
 
Asian American Pacific Islander Month DDSD 2024.pptx
Asian American Pacific Islander Month DDSD 2024.pptxAsian American Pacific Islander Month DDSD 2024.pptx
Asian American Pacific Islander Month DDSD 2024.pptx
 
How to Give a Domain for a Field in Odoo 17
How to Give a Domain for a Field in Odoo 17How to Give a Domain for a Field in Odoo 17
How to Give a Domain for a Field in Odoo 17
 
ICT role in 21st century education and it's challenges.
ICT role in 21st century education and it's challenges.ICT role in 21st century education and it's challenges.
ICT role in 21st century education and it's challenges.
 
PROCESS RECORDING FORMAT.docx
PROCESS      RECORDING        FORMAT.docxPROCESS      RECORDING        FORMAT.docx
PROCESS RECORDING FORMAT.docx
 
psychiatric nursing HISTORY COLLECTION .docx
psychiatric  nursing HISTORY  COLLECTION  .docxpsychiatric  nursing HISTORY  COLLECTION  .docx
psychiatric nursing HISTORY COLLECTION .docx
 
This PowerPoint helps students to consider the concept of infinity.
This PowerPoint helps students to consider the concept of infinity.This PowerPoint helps students to consider the concept of infinity.
This PowerPoint helps students to consider the concept of infinity.
 
Unit-IV- Pharma. Marketing Channels.pptx
Unit-IV- Pharma. Marketing Channels.pptxUnit-IV- Pharma. Marketing Channels.pptx
Unit-IV- Pharma. Marketing Channels.pptx
 
Micro-Scholarship, What it is, How can it help me.pdf
Micro-Scholarship, What it is, How can it help me.pdfMicro-Scholarship, What it is, How can it help me.pdf
Micro-Scholarship, What it is, How can it help me.pdf
 
Measures of Central Tendency: Mean, Median and Mode
Measures of Central Tendency: Mean, Median and ModeMeasures of Central Tendency: Mean, Median and Mode
Measures of Central Tendency: Mean, Median and Mode
 

Organic Plant Breeding Techniques

  • 2. Seeds form the basis for agricultural production, but most organic growers know little about how their seedstocks have been produced. Within the organic movement the discussion on the com- patibility of plant breeding techniques has been accelerated by the public dis- cussion on genetic engineering. This decision-making is important to develop a framework for organic plant breeding and facilitate investment by breeding companies. This dossier explains all standard tech- niques used in modern plant breeding and why they have been developed. The consequences of not allowing certain techniques for organic plant breeding are outlined, along with suggestions for alternative techniques that could be adopted. Introduction 2 1 Parent plants of annual crops have to be grown at least for one generation under organic conditions, while biannual plants and perennials have to be grown for at least two generations under organic conditions. 2 These are the demands of the EU Regulation 2092/91 until the end of 2003. By 2004 organic producers will have to use only organic seeds and vegetative multiplication material. It is important that breeding, multiplication, and mainte- nance techniques are identified and examined to assess their compatibility with the technical, ethical and environmental objectives of organic agriculture. This process will assist the on- going national and international discussions on this topic and will also be of value in light of the requirement for all organic producers to use organic seed by 2004 (EU Regulation 2092/91). The issue of plant breeding techniques and their compatibil- ity with organic farming is complex due to the range of tech- niques available balanced against the different demands for variety and crop performance. Appropriate organic plant breed- ing will serve to develop improved varieties for organic systems without jeopardising the ethical and environmental integrity of organic agriculture. Currently, only the use of varieties obtained by genetic engi- neering is forbidden in organic agriculture across Europe (EU Regulation 2092/91). The regulation requires also that parent plants of annual crops have to be grown at least for one genera- tion under organic conditions, while biannual plants and peren- nials have to be grown for at least two generations under orga- nic conditions.Figure1 should help to understand thedefinition of «organic seeds» and «organic varieties» and to distinguish the different levels of breeding, maintenance, and multiplication. The aim of this dossier is to provide information on plant breeding techniques currently used to help the debate shaping the future of organic plant breeding. Therefore, the mechanism of standard breeding and multiplication techniques is explained with the aid of simple graphics. In addition, the actual applica- tion,the consequences of a rejection of a technique and the alter- natives are described. As a guideline for determining the suita- bility of breeding and multiplication techniques for organic breeding, criteria are formulated in the last part of this dossier. Breeding of varieties Maintenance of varieties Multiplication of seeds and vegetative multiplication material Prohibited Allowed2 if organic material is not available To be used if available2 Genetic engineering Conventional plant breeding Organic plant breeding GMO varieties Conventional varieties Organic varieties Maintenance under conventional conditions Maintenance under organic conditions Multiplication under conventional conditions Multiplication under organic conditions1 Conventional seed and vege- tative multiplication material Organic seeds and vegetative multiplication material Figure 1: Overview on the different levels of breeding, maintenance, and multiplication.
  • 3. Over the last fifty years plant breeding has largely developed in response to the demands of intensive agricultural produc- tion, striving for increased yields, storability and cosmetic per- fection under a system of management based on artificial fer- tiliser nutrition and the use of pesticides. Until now, organic farmers have made use of these traditionally bred varieties but the question being asked more and more regularly is «do these varieties truly fulfil the needs of organic production?» Are the seeds and vegetative multiplication material, usually results of traditional and conventional breeding programs, adapted to the conditions of organic agriculture? And, what do consumers expect from an organic variety? Healthy, tasty, and unique prod- ucts? Furthermore, the quality of organic products is not simply determined by what they are, but also by taking into account how these crops have been produced. This aspect should also be considered when judging breeding lines for agricultural and horticutural production. Undoubtedly, the aims of some modern breeding programs and organic breeding programs have certain similarities. However, a number of considerations are particularly important for developing varieties suited to organic conditions: ● optimal adaptation to local climate and nutrient dynamics ● nutrient efficiency ● durable resistance and tolerance against pests and diseases ● yield stability ● storability ● nutritional and sensorical quality Organic plant breeding aims should be defined on a crop by crop bases involving farmers, breeders, traders, and consumers. In general, plant breeding can be described as the total of activities to improve the genetic properties of a cultivated crop. A breeder develops a new variety with one or more specific aims. Therefore, he has to search for parental plants (other vari- eties or wild relatives) with the desired traits. To obtain plants with the combination of desired characteristics the breeder makes crosses with the parental plants. The result of a cross is a large number of seeds with different genetic make-up (popula- tion). In the next plant generations the breeder has to select for individual plants with the best combinations. To facilitate selec- tion he has different techniques available, the choice of which will depend on the crop (self pollinator, cross pollinator, or plant with vegetative multiplication) and the traits he selects for. In official field trials the usefulness of the new varieties will be compared to existing standard varieties. If the new variety is distinguishable from all other varieties and its appearance is uniform and stable enough over time the breeder will maintain and multiply it for the market. The need for organic plant breeding Plant breeding and multiplication techniques 3 Inducing variability with other varieties or wild plants Selection of parental lines with desired properties Crossing parental lines to combine desired properties Selection of plants for desired traits Official testing of the new variety in field tests Maintenance for the purity of the variety Multiplication for marketable seeds or transplants How does plant breeding and multiplication work
  • 4. Plant breeding is characterised by three main steps: ● Induction of variation by creation of crosses or by variation- inducing treatments ● Selection of desired traits in new varieties ● Propagation and multiplication of breeding lines At each step different techniques can be applied.We can gen- erally distinguish between plant breeding and multiplication techniques which have an impact at: ● plant/population level ● cell/tissue level ● DNA level Table 1 gives an overview of all techniques and helps with colours and symbols to lead through this booklet. Techniques operating at the plant level are carried out with plants in their «natural» compartment, the soil, while techniques on cell and DNA level are applied under laboratory conditions before the resulting varieties are tested under field conditions. Some cell techniques and especially DNA techniques enable the crossing of natural barriers. All cell- and tissue culture techniques rely on the capacity of plant cells to grow on synthetic growth media and to differen- tiate upon stimulation with the appropriate mix of added plant hormones. All plant material needs to be surface sterilized and grown aseptically to avoid contamination with microbes. General distinction of breeding techniques 4 SelectionMultiplicationInducingvariation Table 1: Breeding and multiplication techniques – at which step of the breeding process (inducing variation, selection, multiplication) and at which level (plant, cell, DNA) do they take place. DNA level • Genetic engineering – DNA-transfer: – PEG-mediated transfer – Electroporation – Micro-injection – Particle gun transfer – Agrobacterium treatment • Marker-assisted selection Cell/tissue level • Anther/microspore culture • «In vitro» pollination • Ovary/embryo culture • Polyploidisation • Protoplast/cytoplast fusion • Somaclonal variation • «In vitro» selection • «In vitro» multiplication • Meristem culture • Somatic embryogenesis Plant/population level • Combination breeding • Crossing varieties • Bridging crosses • Repeated back-crossing • Temperature treatment • Cutted/grafted style • Mentor pollen technique • F1-Hybrid breeding • Mutation induction • Mass selection • Pedigree selection • Site determined selection • Change in environment • Change in sowing time • Ear bed method • Indirect selection • Test crosses • Generative multiplication • Vegetative multiplication – Partitioned tubers – Scales, husks, partitioned bulbs – Brood buds, bulbils – Offset bulbs, etc. – Layer, cut and graft shoots – Rhizomes • Apomixis
  • 5. In the following chapters, breeding techniques will be described starting from methods that are applied on the plant or crop level down to the level of tissue, cells and DNA. The tech- niques on cell and DNA level are the most controversial for organic plant breeding. These so-called «in vitro» techniques have become increasingly common in conventional plant breed- ing and are the basis of breeding for quite a large number of veg- etable, flower, and cereal crops. However, one can argue that these techniques may not be appropriate for organic agriculture as there is no direct contact between the plant and the soil dur- ing the process. For each «in vitro» technique the «Pros and Cons», «The consequences of rejection», and the «Alternatives» to this technique are given in addition to the «Approach» and «Application». Within «The consequences of rejection» two dif- ferent levels are distinguished: ● Consequences on variety level: the rejection of a technique prohibits the use of all varieties once bred with this tech- nique. ● Consequences on breeding level: the rejection of a technique makes restrictions on future cultivars and breeding pro- grammes. The use of genetically modified organisms is prohibited in organic agriculture (EU regulation 2092/91 on organic agricul- ture). Therefore, no details are given on these techniques within this booklet. DNA diagnostic techniques, which enable selection at DNA level, are not necessarely related to genetic engineering because they do not involve the genetic modification of crop DNA. Therefore, these techniques could be considered for organic plant breeding and are explained within this booklet. In addition, the technique of protoplast fusion, which is related to genetic engineering because it can involve transfer of large pieces of chromosomes from alien species, is also considered. 5 A simplified story – breeding and multiplication of tomatoes Photos:JanVelema,VitalisBiologischeZadenBV The flower of a selected tomato plant is emas- culated … … while pollen of an other selected tomato plant is collected. The pollen is then transferred on to the style for fertilisation. This crossing induces varia- tion. Offsprings are selected for different criteria like resistance to diseases, taste, or yield. After a long period of testing, the new variety is multiplied … … to get seeds for the market.
  • 6. Combination breeding Approach: Crossing two genotypes of the same species, for example two established cultivars. Depending on the plant, whether it is asexually propagating, self- pollinating or cross-pollinating, various generations are propagated and selected after the cross. Application: Combination breeding is widely used to create variation in breeding lines. Crossing varieties or species Approach: Crossing of plants with cultivars from other climatic conditions, with wild relatives, or closely related species. Basically, there is a limit to the ability of one plant to fertilise a plant of another species but, breeders have developed a number of methods to get around these cross limitations, for instance treatment of the flower or rescue of embryos. Methods are described later in this booklet which can be carried out in the greenhouse or in the laboratory. Application: Widely used technique with varying success rates. Techniques: approaches, application, alternatives Techniques to induce variation at the plant/population level 6 Crossing of wheat: preparation of the flower (emasculation) … … pollination by hand … … and protecting ears with little bags after pollination. Photos:GabrielaBrändle,FAL variety A variety B variety A‫ן‬B variety wild plant
  • 7. Repeated back-crossing Approach: Species crosses may result in proge- ny that have too many wild characteris- tics making direct selection for valuable traits impossible. In these cases, repeat- ed back-crossing with a well-adapted cultivar may eliminate some of the wild and/or exotic traits, finally producing a genotype that is highly similar to the cultivar but with the additional desired characteristic. A breeder must usually make three or four back-crosses before being able to switch to pedigree selec- tion (see page 15). Application: Repeated back-crossing is always applied when a desirable new trait is incorporated into an existing variety. It has already proven its value for a great number of varieties which have gained a high tolerance to biotic and abiotic stress. Examples are the introduction of race-specific resistance genes against fungal pathogens in lettuce, tomatoes, and many cereals. 7 Bridging cross Approach: A method of bypassing an incom- patibility barrier between two species or genotypes by using a third species or genotype, which is partly compatible with each of them, in an intermediate cross. The wild plant is first crossed with another (wild) species, its progeny is selected for the desired characteristic and these are then crossed with the cul- tivar. Application: Used in cases where the desired characteristic is easy to select. Making bridging crosses is a time-consuming process. Once the characteristic has been incorporated in the cultivar, a number of back-crosses are needed to rogue out as many undesirable 'wild characters' as possible. A C A‫ן‬C (A‫ן‬C)‫ן‬B well-adapted cultivar cultivar with too many wild characteristics new! B not possible Temperature treatment of the style Approach: Exposing the plant or the style to higher temperatures for a certain period of time may break down some of the incompatibility barriers in the style. After the temperature treatment, the pollen may succeed in working its way down through the style to the ovary. Application: Mostly used in ornamental plants (e.g. lilies). A‫ן‬B A B
  • 8. Mentor pollen technique Approach: The mentor pollen technique can be used to solve recognition and growth problems. To this end, pollen from the desired male parent is mixed with pollen from the same species as the maternal plant. The latter's pollen has been partially inactivated by irradia- tion; it still germinates but does not fer- tilise. The mentor pollen germ tubes 'guide' the pollen germ tubes from the desired male parent to the ovary, which is fertilised by the pollen. Mentor pollen which has not been irradiated, and which has thus retained its vigour, may also be used but is less efficient, because it competes with the pollen of the desired parent. Application: This technique is mainly used in the breeding of ornamentals. Cut style Approach: This method is used when pollen grains germinate on the stigma, but can- not grow far enough into the style, so that the ovary is never fertilised. Sometimes fertilisation can be achieved by cutting (part of) the style of the female plant and applying pollen, mixed with stigma juice, to the surface of the cut. The pollen tube now has only a short distance to grow, increasing the chance of fertilisation. Application: This method is suitable only for some plants, such as ornamentals with a long style. Seed is only likely to be formed if the two species are closely related. Grafting on the style Approach: This method can be used when pollen fails to germinate on the stigma of the female plant. Pollen is first applied to the stigma of a plant of the same species, so that it germinates effec- tively and the pollen grows into the style. The style is then cut off, just below the point reached by the pollen germ tubes, and grafted on a cut style of the desired female plant. When the two styles have joined, the pollen germ tubes continue down the style of the female plant and fertilises the ovary. Application: For practical reasons, the method is only feasible for plants with a fairly long and thick style and is mainly used for ornamental plants such as lilies. 8 A‫ן‬B A A B A‫ן‬B B B AA A A A B A‫ן‬B B
  • 9. 9 F1 hybrid breeding Approach: Hybridisation is a way of achieving highly uniform and productive varieties. Parental lines (of cross pollinators) have to be inbred for a number of generations to obtain homozy- gous lines. The F1 hybrid (the hybrid variety) is the result of a cross between two homozygous inbred lines. These inbred lines sometimes have reduced vigour but, their progeny (F1 hybrids) is highly uniform and vigorous due to heterosis. The F1 hybrid represents the new variety and is sold to the client. Therefore, large numbers of seed need to be produced by fer- tilisation of the inbred maternal line with the pollen of the inbred paternal line. In plants where male and female inflores- cence are physically separated (monoecious), the male inflo- rescence is removed mechanically (e.g. maize). Other crops are manually emasculated or cytoplasmatic male sterility (CMS) is introduced in the maternal line through crossing or protoplast fusion (for details see protoplast fusion). So-called Restorer lines without male sterility, which have the same genetic make- up as the maternal line, are used to maintain the female line. In seed-producing crops, these Restorer genes are also present in paternal lines, so that the resulting F1 hybrid can produce fertile pollen and set seed. Due to the heterozygous nature of the F1-hybrid seeds, the progeny of these plants will be highly heterogeneous (segrega- tion of favourable traits). It is therefore unlikely that seeds from a F1-hybrid crop will give the same quality and yield as the seeds bought from the breeding company (built-in prod- uct protection). Farmers are thus forced to buy new seed every year and this economical aspect is the main reasons why hybrids are so popular with breeders. Application: Widely used technique in many crops (vegetables, maize, rye, sunflower). A B repeated inbreeding repeated inbreeding F1 A‫ן‬B A inbred B inbred Pros and Cons: Pros: -uniform and productive crops. -built-in product protection as an economic guarantee for breeders. Cons: -multiple inbreeding of parental lines can lead to plants which would not survive under organic condi- tions. -no useful seeds can be obtained from hybrids and therefore, farmers are forced to buy new seeds. -the nutritional value of hybrids is controversially dis- cussed. Consequences of a rejection: • At variety level: a total rejection of F1 hybrids for all crops would make vegetable crop production difficult for the next 5 to 15 years because many established varieties would have to be replaced. If restrictions are limited to CMS hybrids without Restorer gene, a small number of vegetable varieties (leek, cabbage) would not be available for organic agriculture (see also protoplast fusion). • At breeding level: time consuming breeding programmes have to be established to get varieties with similar proper- ties and new regulations to protect breeders work have to be established. Alternatives: Quality and yield improvement can be achieved by pedi- gree and mass selection among open pollinated varieties. If F1 hybrid selection is judged as a technique that is not suitable for organic breeding in the future, all other «traditional» tech- niques have to be evaluated crop by crop to start special organ- ic breeding programmes.
  • 10. Anther and microspore culture Approach: Immature anthers or pollen grains are cultivated «in vitro» to induce pollen grains to develop into multicellular struc- tures, particularly into embryos, with a single set of chromo- somes (haploid plants). When such haploid embryos or plants are treated with chromosome doubling agents, e.g. colchicine, their normal chromosome number is restored (and thus their fertility) and the obtained plants are pure (homozygous or inbred) lines. In some cases chromosome doubling occurs spontaneously during «in vitro» culture. Culture of microspores (pollen grain) is actually a further elaboration of anther culture. Rather than using whole anthers, only the microspores are cultured. Application: Anther and microspore culture is usually carried out at the beginning of a breeding programme. These techniques are applied to obtain homozygous plants in a short time and are commonly used to breed barley, crucifers, and solanum species. Pros and Cons: Pros: -time and work-saving to get homozygous lines for hybridisation. Cons: -laboratory technique using toxic substances. -generative process is turned into a vegetative process Consequences of a rejection: • At variety level: some existing varieties of e.g. barley, Brussels sprouts, and pepper would be ruled out. It is not clear if the history of «critical» varieties can be traced back. • At breeding level: the more time-consuming inbreeding must be used to get homozygous lines. Alternatives: These techniques aim to simplify the process of selection and to accelerate the process to get homozygous lines for mak- ing F1 hybrids. However, no new characteristics are added to the plant. From a genetic point of view, plants obtained through the culture of anthers or microspores are identical to inbred lines. Therefore, with more time and work almost the same results could be achieved by traditional breeding. Techniques to induce variation at the cell/tissue level 10 Antherculture Microspore culture microspores on medium haploid embryo haploid plant diploid plant colchicine cut and centrifugate Mutation induction Approach: New traits often arise through mutations or changes in DNA. Mutations may occur spontaneously (e.g. by exposure to sunlight, cold or heat, radicals) during cell division or may be provoked by exposing plants to irradiation or chemical agents. Most mutations are recessive and as such are not directly visi- ble in the treated plant. However, after selfing, the mutated genotypes may be identified in the progeny, when two reces- sive alleles are combined in one plant. Application: Some examples of genetic variation through induced mutations are flower colour in ornamentals, some sweet cher- ry varieties, and some dwarfing genes in cereals. Although there is still a large selection of tried and tested mutagens on the market, this technique is not used frequently anymore. This method is often combined with «in vitro» selection for resistance against salt, heavy metals, or toxic compounds. Pros and Cons: Pros: -rapid induction of variation when new traits are needed. Cons: -use of toxic substances or radiation. -can be replaced by less hazardous techniques. Consequences of a rejection: • At variety level: if varieties which originate from induced mutations were rejected, some varieties in different crops (e.g. sweet cherries and ornamental plants) would be affected. However, it is not clear if the history of these varieties could be traced back. • At breeding level: not an important loss. Alternatives: Mutations also occur spontaneously and therefore, natural variation in cultivated and wild plants may be sufficient to obtain the desired traits. However, crossing techniques usually result in a similar level of natural variation.
  • 11. Ovary and embryo culture Approach: Despite successful fertilisation, an embryo may not devel- op into a mature seed. The purpose of ovary and embryo cul- ture is to transfer the embryo to an artificial nutritional sub- strate at an early stage, so that it need no longer depend on plant resources. In ovary culture, the entire ovary or slices of the ovary are placed on the substrate. The ovules swell and at a certain point are removed from the ovaries and cultured independently. By this time, the ovules have in fact become seeds on a substrate, where they may germinate. In embryo culture, embryos are isolated from fertilised flower buds and placed on a nutritive substrate to germinate. Application: Embryo culture (and ovary culture) is the most frequently used technique to cross in resistance genes from (wild) closely related species. These techniques were often used for tomatoes, sweet pepper, courgettes, lettuce, wheat, and a lot of other crops. 80 to 100% of the cultivars originate from one or the other inter-species cross. More combinations can be achieved than with standard crosses, since the first steps of embryogen- esis have been made on the plant and development is com- pleted by growing the embryo on substrate. Pros and Cons: Pros: -improve the chances of overcoming natural barriers of crossing that could rarely occur in nature. Cons: -forced development of embryos under artificial and sterile conditions using synthetic phytohormones. Consequences of a rejection: • At variety level: most modern varieties of tomatoes and many sweet pepper, lettuce, cereal and courgette varieties were bred using this type of technique and would be ruled out for organic agriculture. • At breeding level: very time-consuming alternatives. Alternatives: Instead of embryo culture much more crossings would have to be carried out. Instead of 50 crosses, more than 1000 would need to be done to get a few viable seeds. Alternatively, different parents should be selected from stocks or the wild accessions. 11 «In vitro» pollination Approach: In crosses, for example between a cultivar and its wild rel- ative, fertilisation sometimes fails, either because the pollen won't germinate or because it can't get to the ovary. Sometimes pollination and fertilisation can be achieved «in vitro». Ovaries or ovules are removed from the plants under sterile laboratory conditions and fertilised «in vitro» with pollen. Fertilisation barriers between the stigma and the ovary can thus be over- come. The cut style and grafted style methods (see «cut style» and «grafting on the style») are also used «in vitro». However, rather than being carried out on the whole plant they are car- ried out on isolated ovules cultured in a test tube or petri dish. Application: The technique is usually applied at the beginning of a breeding programme which is aimed specifically at introduc- ing a certain character, for example a resistance gene from a (wild) closely related species, into a cultivar. More genetic combinations can be made than was previously possible. However, the method has a low success rate, although this does depend strongly on the species used and the combinations made. It is mostly used for ornamental breeding. Pros and Cons: Pros: -improve the chances of overcoming natural barriers of crossing that could rarely occur in nature. Cons: -forced crossing of natural barriers in artificial and sterile conditions. Consequences of a rejection: • At variety level: some varieties of ornamentals would have to be ruled out. It is not clear if the history of «critical» varieties can be traced back. • At breeding level: a rejection of this technique would be a minor restriction because there are alternative techniques. Alternatives: The techniques «cut style» and «grafting on the style» could replace the «in vitro» pollination. female sexual organs isolated ovaries A A B B embryo embryo ovary culture phytohormones embryo culture
  • 12. 12 Protoplast/Cytoplast fusion Approach: Protoplasts are cells without a cell wall. These are obtained by treating fragments of leaves with cell wall dissolving enzymes. The protoplasts then grow a cell wall again and divide, resulting in a callus from which plants can regenerate. Protoplasts of different plant species can be fused with chemi- cal or electric stimuli (somatic hybridisation). During this fusion, the organelles of both plants (chloroplasts and mito- chondria) are combined, while in crosses, only maternal chloroplasts and mitochondria are passed on to the progeny. The resulting tetraploid fusion product has the characteristics of both parent species. During regeneration the chromosomes and the organelles of both parents may be mixed, so that many combinations are produced. To avoid exchange of chromo- somes, protoplasts can be treated in such a way that the nucle- us is removed or fragmented. These so-called cytoplasts do contain the organelles, but not the chromosomes of the donor plant. In this way CMS (cytoplasmic male sterility) can be transferred to other plant species. Breeding companies use dif- ferent plant sources of CMS and have patents on the applica- tion of these kinds of CMS by describing the associated DNA changes in mitochondrial genome. Application: In combining the maternal and paternal organelles, new combinations are made. An example is male sterility, which is determined by organelles (mitochondria). This method was used to transfer natural cytoplasmic male sterility (CMS) of radish CMS to cabbage and of sunflower CMS to chicory. After fusion, selection is directed at the cytoplasmic characteristic. The protoplast method is used to insert complete chromo- some fragments from an other less related species into a culti- var. cut leave enzyme treatment to dissolve cell walls proto- plasts chemical or electric stimuli cell fusion nucleus fusion Polyploidisation Approach: A plant cell typically has two copies of each chromosome (diploid). A cell is polyploid if it has at least twice the normal number of chromosomes (tetraploid). Polyploidy can occur spontaneously or can be induced using chemicals such as colchicine. Normally, during cell division the spindle in the cell ensures that each half of the set of chromosomes is reorgan- ised into two new cells. Colchicine dissolves the spindle, so that the chromosomes remain in one cell and then duplicate (tetraploid cell). When small meristems or seed are treated with colchicine, they are likely to grow into a plant with a completely doubled genome. Application: Doubling the number of chromosomes is sometimes nec- essary to restore the fertility of plants obtained through species crosses or haploidisation. However, polyploidisation is also applied to get plants with a double set of chromosomes (pota- toes, clover, forrage grasses, ornamentals). These plants are generally larger or more robust than plants with the normal number of chromosomes. They may therefore be more pro- fitable or have a higher ornamental value. Pros and Cons: Pros: -easy way to restore fertility of plants and to get larger and more robust varieties. Cons: -use of a toxic substance (colchicine). Consequences of a rejection: • At variety level: since it is difficult to trace back the origin of the genome duplication, either spontaneous or chemi- cally-induced, it is difficult to judge polyploid varieties. However, for some crops it is known that colchicine was used to develop parent lines (e.g. potatoes with Pallida resistance or tetraploid grasses). • At breeding level: without polyploidisation it will be diffi- cult to restore fertility of some plant species. Alternatives: If necessary spontaneous polyploids can be selected for the desired crop or ornamental. colchicine dissolves spindles diploid normal cell division 2 diploid cells tetraploid
  • 13. 13 Pros and Cons: Pros: -rapid way to get new combinations and traits which would not be possible in nature. Cons: -natural barriers are forced with this method which is closely related to genetic engineering. Consequences of a rejection: • At variety level: only a few modern cabbage, endive, leek, and chicory varieties would be ruled out for organic agri- culture if this technique was forbidden for organic plant breeding. • At breeding level: protoplast fusion is not of great impor- tance, yet. Goals of organic plant breeding can be achieved without it. Cytoplast fusion is of great importance to induce CMS. Alternatives: A hybrid breeding program for cabbage could also be based on the self-incompatibility (hinders self-fertilisation) of some cabbage species. protoplasts cell fusion cells without nucleus (cytoplasts) chemical or electric stimuli new! After fusion protoplasts are regenerated (green cultures). Protoplasts of tobacco. Photos:MichelHaring,UniversityofAmsterdam
  • 14. 14 Mass selection Approach: Mass selection is based on the ability to recognise desirable or undesirable traits in plants of a population. What appear to be the best plants are maintained in bulk (positive mass selection), while plants with too little of the desired characteristic are eliminated (negative mass selection). Since selection is based on phenotype, the tech- nique is particularly effective for traits which are barely influenced by environmental factors and which are not inherited as dominant or recessive traits but rather as com- plex traits. Application: The technique is mostly applied during the early stages of a breeding programme, when there is not enough representative plant- or seedstock for repeated testing, when seedstock needs to be improved, or when little capital is available for a breed- ing programme. However, breeding based only on mass selection is a lengthy process. This is the selection method that most resembles natural selection. Techniques for selection at the plant/population level Mass selection: salads are selected for different criteria (e.g. disease resistance) on test plots in the field. Marker-assisted selection: evaluation of an autoradiogram of a gel with DNA markers (see page 18). Photo:LouisBolkInstitutePhoto:MichelHaring
  • 15. 15 Pedigree selection Approach: In pedigree selection, elite plant lines are developed from a single plant. Each selected plant is harvested separately and grown as distinct lines in the following year. Lines will only be maintained following a favourable assessment of performance throughout the line. The best plants of the line will be identi- fied and their seed will again be harvested separately for the next round. The selection is made on the basis of general impressions (phenotype) and heredity of the desired charac- teristics (genotype). Application: The pedigree method involves visual selection among indi- vidual plants in early generations. Because the pedigree method uses selection in each generation, each generation must be grown in an environment where genetic differences will be expressed (greenhouses and off-season nurseries may not be useful). Pedigree selection produces new cultivars faster than mass selection. The method is particularly appropriate for self-pollinators. Site-determined selection Approach: The goal of this selection method is to select varieties, sometimes population varieties, which are optimally adapted to specific regional conditions. The parent lines are also select- ed with the final growing site (region) of the crop in mind. Crosses are carried out at a central location, where the F1 and early generations (F2 to F4) are also sown. The F5 to Fn plants are assessed and selected at different locations by means of pedigree selection. This is a combination of natural selection and artificial selection. In other words, environmental factors determine which characteristics are expressed and which are not and this may influence the breeder's selection of promis- ing phenotypes. Application: This method is applied especially in «organic» breeding programmes for cereals such as wheat, barley, rye and spelt. However, in theory it is also suitable for use with other crops. site adapted varieties A‫ן‬B A‫ן‬B F1 F2 F3 F4 Fn F1–4 F5 F6 Fn
  • 16. 16 Ear-bed method Approach: An ear-bed is a seedbed in which the grains from one ear are sown in the same sequence in which they were arranged in the ear. Thus the plants in the seedbed (ear-bed) reflect the quality of the original ear. Application: This breeding method was devel- oped by bio-dynamic plant breeders especially for cereals, but it may also be used for other crops. 2 3 4 5 6 7 8 9 101 11 1213 14 15 16 17 1819 20 21 22 23 24 Change in sowing time Approach: A change in the sowing time (early and late spring; early or late autumn) is usually applied to select for day-length insensitivity, reduced vernalisation requirement, and yield and quality sta- bility in different length of growth peri- od. Application: This method can be used in self- and cross-pollinating crops. Some bio-dynamic breeders consid- er this method to improve seed quality. It is especially used in cereals. Change in environment Approach: Change of environment during the selection process is also called shuttle breeding. This method is used to select broadly adapted genotypes out of segre- gating populations. Application: This method can be used for self- and cross-pollinating crops. Some bio-dynamic breeders also use this technique to induce variation and even to enhance the vigour of a variety. different geographical regions different soil types spring autumn
  • 17. 17 Test crosses Approach: Promising parental genotypes are crossed with a number of other known genotypes. Progeny is grown separately and assessed for the desired characteris- tics. The measurements are used to determine General Combining Ability (GCA) and Specific Combining Ability (SCA), and these are needed if effective crosses are to be made. Application: In breeding, it is not enough merely to select the best cultivars, but parents with good crossing ability must also be available, so that a number of impor- tant characteristics are combined and passed on to progeny. This is especially crucial for asexually propagated plants and hybrids. Test crosses are asking extensive testing facilities and are time consuming. However, they are an investment in the future. seeds after sowing in growing mutagenesis a selective medium of tolerant mutants «In vitro» selection Approach: «In vitro» selection uses somaclonal variation or mutation induction to select plants with new traits. For example, to obtain plants with a high tolerance to salt, selection occurs in a saline environment. This can be done by treatment of individ- ual plant cells that are growing in tissue culture or by treatment of seeds and subse- quent germination on selective growth medium. Selection for resistance to diseases and pests can also be carried out «in vitro». The pathogen, or a toxin produced by the pathogen, is applied to the plants under controlled conditions. Application: This technique is used to screen many plants or cells for one specific characteris- tic. It is a sort of pre-selection to reduce the number of plants to be tested in the field. After «in vitro» selection plants are always tested under field circumstances to observe the expression of the characteristics in the open field. Plants resulting from this selec- tion process may be marketed directly as a new variety (after «in vitro» multiplica- tion) or they may be used as a parent in further breeding programmes. Pros and Cons: Pros: -cheap way to pre-select plants and reduce the number of plants to be tested in the field. Cons: -the artificial and sterile conditions in the laboratory do not help to select for organic conditions. Consequences of a rejection: • At variety level: some varieties of different crops would be ruled out for organic agriculture if this technique were to be prohibited in organic breeding. «In vitro» selection can not be identified in the product and can therefore not be controlled. • At breeding level: more time-consuming selections in the field would be needed. Alternatives: Similar selection for specific characters could be done with the above mentioned techniques of selection in the field, but they are much more time consuming. On the other hand, selection in the field helps to find plants adapted to a broader range of environmental factors. Techniques for selection at the cell/tissue level A‫ן‬B A‫ן‬C A‫ן‬D F1 no good F1 no good F1 A‫ן‬B: good SCA A: bad GCA
  • 18. 18 Marker-assisted selection Approach: Biochemical and molecular techniques are often used in direct selection. Polymorphism of plants is fixed at different levels: the molecular, biochemical, and phenotypic level. On biochemical level some plant proteins (enzymes) can have a slightly different composition in different plant varieties and can be visualised as different banding patterns (isozymes). By genetic analysis a certain band can be linked to a desirable trait (yield, taste, resistance). When this linkage is established, the presence of the marker (isozyme band) in a breeding line sug- gests that the linked trait is also present. Similarly, the variation in the DNA sequence around a gene or genes determining a desired trait can be revealed by isolat- ing the DNA and making parts of the DNA base sequence vis- ible. Visualisation techniques all require a treatment of DNA with restriction enzymes and radio-active or fluorescent labels. These enzymes are naturally occuring in bacteria and can be isolated from them. Today, they are usually produced as recombinant proteins. These are indistinguishable from non- recombinant enzymes and can be isolated at a fraction of the costs. The resulting banding pattern of the different DNA fragments is used to find those bands which are linked to the desired characteristic of a plant. This tool does not rely on the introduction of transgenic DNA into the plant, but analyses the DNA content of individual progeny to preselect for the presence of known traits. Application: Molecular markers can be used for a particular DNA seg- ment which is linked to a trait of interest. Traits can be caused by single gene or be due to a number of genes. The aim of marker-assisted breeding is to speed up selection and to direct- ly select for traits. In the future, large populations could first be screened for the presence of known markers (i.e. traits), before being used in field plots. A prerequisite for marker-assisted selection is that a marker is found that is closely linked to a desired characteristic. It requires an extensive genetic mapping programme before this technique can be used in a breeding programme. The molecular markers that are developed by breeding companies are often patented to prevent the compe- tition from developing the same traits. This technique is increasingly used in breeding programmes for all crops. Pros and Cons: Pros: -efficient and less time consuming selection. -allows the pyramidisation of resistance genes for better resistance. Cons: -reduces the plant to a subset of DNA sequences -use of toxic substances. Consequences of a rejection: • At variety level: at the moment, modern plant breeding uses this tool for selection with the goal to improve breed- ing in terms of time and costs. However, only a few vari- eties selected with this technique are on the market. • At breeding level: the application of marker-based selec- tion cannot be identified in the product and can therefore not be controlled. Alternatives: As soon as markers for important characteristics are found, this tool will help to make selection more efficient and less time consuming. However, most techniques of selection can replace marker-based selection, provided that there are no financial and infrastructural restraints. GAATTC GAATTC GAATTC GAATTC GTATC GAATTC Techniques for selection at the DNA level DNA sequence variety A restriction enzyme cutting DNA sequence G–A AA Aa aa genotype DNA sequence variety B marker for a marker for A elite hybrid parent two DNA fragments linked with trait A one DNA fragment linked with trait a wild species selected with DNA marker selected with DNA marker selected with DNA marker new hybrid parent 1/10 1/50 1/100
  • 19. 19 variety A breeders seed pre-basic seed basic seed certified seed Multiplication of sexually reproducing plants Approach: When a new variety has been select- ed out of the new genetic variation, it must be propagated and maintained as a pure bred. In self-pollinating and cross-pollinating plants, the selected genotypes flower in isolation. Positive mass selection ensures that the elite par- ent lines are of high quality and meet all the requirements of a variety. Not all diseases in parent plants are passed on to seed, but some seedborne diseases like Alternaria on carrots and Common bunt on wheat need special attention. Most seed can be stored for long peri- ods of time. Application: Used for all sexually reproducing plants. Techniques for multiplication at the plant/population level Multiplication of asexually reproducing plants Approach: In asexually propagated plants, such as beets, potatoes, bulbs or grafted plants, extra care must be taken to avoid deterioration in the health of the seed or plant stock. Living plant stock often does not keep well, thus these lines are maintained through a continuous pro- cess of multiplication. However, the ad- vantage of vegetative multiplication is that the progeny has exactly the same genotype as the parent, whether hetero- zygous or homozygous. Application: Used for all asexually reproducing plants. Multiplication of apple seedlings. «In vitro» multiplication of sugar beets. Meristem culture of sugar beet in petridishes. Photo:MarkusKellerhals,FAWPhotos:GunillaLissek-Wolf
  • 20. 20 «In vitro» multiplication Approach: Depending on the plant species, some part of a plant - most commonly a piece of stem with an axillary bud, or part of a leaf or bulb scale – is cultured «in vitro». These sections of plant grow out to form shoots, which can in turn be cut and propagated. This may be repeated several times to get enough plants. These are grown until their roots are developed, then hardened off and transferred to normal greenhouse and/or field conditions. Application: This method is often used to get enough basic material to be able to bring a new variety on the market. In addition, this technique is being used more regularly to maintain parent lines of hybrids. Pros and Cons: Pros: -cheap and rapid way to multiply great numbers of plants. Cons: -the sterile and artificial conditions could lead to a selection for laboratory conditions. Consequences of a rejection: • At variety level: some varieties of cut flowers and leek hybrids would be ruled out. • At multiplication level: more expensive and time-consum- ing techniques have to be applied. Alternatives: For most crops there are other multiplication methods which are quite effective. Techniques for multiplication at the cell/tissue level F1 F1 F 2 F 2–Fn Apomixis Approach: Some species can reproduce asexually through seeds. This phenomenon is called apomixis. In the seed forming process , meiosis that is essential for sexual reproduction, is either sup- pressed or circumvented so that the embryo is genetically identical to the mother plant. There are obligate apomicts, whose seed contains apomictic embryos, and facultative apomicts, which can form both sexual and apomictic embryos in their seeds. Application: Apomixis occurs in cultivated plants (Poa pratensis, oranges, tropical plants) and wild plants and has caught breed- ers' interest because it combines the advantages of seed multi- plication - health and maintenance of quality - with the iden- tical reproduction of the maternal genotype. Apomictic multi- plication is considered a promising method to maintain vari- eties and to fix the heterosis effect of hybrids. The technique is hardly used in today's plant breeding but, with the help of genetic engineering the technique is expected to become avail- able for a large number of crop species in the near future.
  • 21. 21 Somatic embryogenesis Approach: Somatic embryos are created from a piece of plant materi- al isolated from the mother plant and may or may not first have undergone a callus phase. Callus, which is commonly propagated in liquid medium, is homogenised to form a cell suspension. Plant hormones are added to the cells isolated from the mother plant, the callus or the cell suspension to stimulate the cells' development into somatic embryos. Often, these embryos are in turn capable of forming secondary embryos, thus leading to a continuous multiplication process. From these embryos a new plant can be regenerated «in vitro». Application: This method has the greatest multiplication potential and is less labour intensive compared to other «in vitro» multipli- cation methods. The method can be used for large-scale or even automated production. Pros and Cons: Pros: -very cheap and rapid way to multiply great numbers of plants. Cons: -the sterile and artificial conditions could lead to a selection for laboratory conditions. -use of synthetic phytohormones. -risk of spontaneous mutations. Consequences of a rejection: • At variety level: many varieties of cut flowers would be ruled out. • At multiplication level: more expensive and time-consum- ing techniques have to be applied. Alternatives: For most crops there are other multiplication methods which are quite effective. Meristem culture Approach: In meristem culture, parts from the meristem are isolated and cultured on substrate. The resulting plants are screened for viruses with the ELISA method. Uninfected plants are then propagated in the manner described previously. Application: Meristem culture often is the only way to get virus-free plant material (e.g. berries, bulbs, potatoes). Viruses can be especially persistent in asexually propagated plants, because they are passed on to the following year's stock (e.g. garlic). Viruses proliferate and spread through the plant, but they never quite catch up with the rapidly dividing cells in the plant meristem. This method is widely used for multiplication of fruit rootstock, transplants of berries, flower bulbs, and veg- etables. Pros and Cons: Pros: -best and often only way to get virus-free plants. Cons: -use of synthetic phytohormones. Consequences of a rejection: • At variety level: most rootstocks of fruits and transplants of berries and many vegetable varieties would be ruled out. • At multiplication level: new techniques would have to be developed. Alternatives: If just the youngest parts of plants are used for multiplica- tion, virus-free multiplication should also be possible using standard multiplication methods. callus callus growing culture callus development «in vitro» of somatic embryos shoot
  • 22. 22 If guidelines and guide-posts are to be developed for organ- ic plant breeding then the suitability of breeding and multi- plication techniques must be evaluated. Discussion on national and international level showed that in order to do this, criteria for evaluation must be set (Wiethaler et al., 2000). Criteria could be derived from the basic principles of organic agriculture and translated to plant breeding. The Louis Bolk Institute has worked out a suggestion for such criteria (Lammerts van Bueren et al., 1999). The authors of this suggestion used three basic principles in organic agriculture as a starting point: ● closed production cycles ● natural self regulation ● biodiversity In order to draw up a framework for an organic breeding system these principles could be extrapolated to the level of plants. The three criteria for organic plant breeding then are: ● natural reproductive ability of plants ● ability to adapt to organic conditions ● genetic diversity with respect for natural species authenticity and species characteristics. As breeding is also a socio-economic activity these principles could also be applied to the socio-economic level: ● close interaction between farmers, breeders, traders, and consumers for a participative plant breeding ● regulations incorporating organic principles ● cultural diversity: diverse breeding programmes as a prere- quisite for genetic diversity. This includes free exchange of varieties among breeders. Therefore, plants should be main- tained with an ability to pass on genes to future breeding programmes. This includes production of fertile seeds and the prevention of patenting varieties. On the basis of these principles, plant and crop based breed- ing techniques best suit an interactive organic breeding system. These principles would lead to breeding techniques allowing the whole breeding process to take place under organic (soil) con- ditions. This creates an ethical dilemma. Does that imply that the smallest living entity to work with in organic breeding programmes is the plant or the crop? Or, is the plant cell the smallest living entity because it can regenerate into a plant again or do we want to reduce life to the complexity of heritable mate- rial, the DNA? Table 2 considers the suitability of breeding and multiplication techniques for organic plant breeding based on three ethical interpretations of the smallest living entity – the plant, the cell, or the DNA. The result of judging the techniques from these different points of view would have quite different consequences for the actual seed availability of the most important crop groups: ● plants as the smallest living entity: some few cereal varieties, many vegetable varieties (e.g. tomato, sweet pepper, lettuce, cabbage), some fruit and vine varieties, some forrage crop varieties, and many ornamental plants would be rouled out. ● cells as the smallest living entity: just some few vegetable varieties (e.g. cabbage) and in the future potato and maize varieties would have to be rouled out. ● DNA as the smallest living entity: no consequences for the seed availability. However, if restrictions for one or the other technique are made, it still has to be decided ● whether the use of all varieties once bred with these tech- niques should be prohibited (also as breeding material) ● or restrictions are made only for future cultivars and breed- ing programmes. In addition, any regulation has to distinguish clearly between allowed and not allowed techniques and these differ- ences must be controllable. An additional possibility to enhance the «quality» of organic plant breeding would be to certify breeders following a defined organic plant breeding pro- gramme. The organic movement needs to find a clear and feasible way to define organic plant breeding with the aim to promote and accelerate the production of suitable plants for a sound organic agriculture. Judging the suitability of the breeding and multiplication techniques for organic agriculture References Lammerts van Bueren, E. T., Hulscher, M., Haring, M., Jongerden, J., van Mansvelt, J.D., den Nijs, A. P. M. and Ruivenkamp, G. T. P. (1999) Sustainable organic plant breeding. Final report: a vision, choices, con- sequences and steps. Louis Bolk Institute, Driebergen. 59 pp. Wiethaler, C., Opperman, R. and Wyss, E. (2000) Organic plant breeding and biodiversity of cultural plants. Reports on the international confer- ences. Naturschutzbund Deutschland and Research Institute of Organic Agriculture. 115 pp.
  • 23. 23 Colours and arrows give the «degree of suitability»: = no problem, = ok, = not suitable but provisionally allowed, = not suitable. Table 2: Judgement of breeding and multiplication techniques considering either the plant, or the cell, or the DNA to be the smallest living entity. Smallest living entity Inducing variation Plant Cell DNA Combination breeding, Crossing varieties, Bridging cross, Repeated back-crossing, Cutted/grafted style, Temperature treatment of the style F1 hybrid breeding, Unradiated mentor pollen technique Ovary/embryo culture, «In vitro» pollination, Anther/Microspore culture Polyploidisation, Somaclonal variation Hybridisation for CMS without restorer gene, Radiated mentor pollen technique Protoplast fusion Genetic engineering (is already prohibited) Selection Plant Cell DNA Mass selection, Pedigree selection, Site determined selection, Change in environment, Change in sowing time, Ear bed method Test crosses «In vitro» selection Marker-assisted selection Multiplication Plant Cell DNA Generative multiplication Vegetative multiplication Apomixis Meristem culture «In vitro» multiplication, Somatic embryogenesis Imprint Editor: Research Institute of Organic Agriculture (FiBL), Ackerstrasse, P.O. Box, CH-5070 Frick, Phone: +41 (0)62 865 72 72, Fax: +41 (0)62 865 72 73, E-mail: admin@fibl.ch, Homepage: www.fibl.ch Research Institute of Organic Agriculture (FiBL) Berlin e.V., Rungestrasse 19, D-10179 Berlin, Phone: +49 (0)30 27 58 17 50, Fax: +49 (0)30 27 58 17 59, E-mail: Berlin@fibl.de Authors: Eric Wyss (FiBL, Frick), Edith Lammerts van Bueren (Louis Bolk Institute, Driebergen), Marjolein Hulscher (Louis Bolk Institute, Driebergen), Michel Haring (University of Amsterdam) Co-authors: Christine Arncken-Karutz (FiBL, Frick), Robert Haward (Soil Association, Bristol), François Lhopiteau (Institut Technique pour l’Agriculture Biologique, Paris), Eckard Reiners (Bioland Association Germany, Member of the Standards Committee of IFOAM), Klaus-Peter Wilbois (FiBL, Berlin) Collaboration: Beat Keller (University of Zurich), Jos van Damme (Netherlands Institute of Ecology, Heteren), Peter van Dijk (Netherlands Institute of Ecology, Heteren), Michael Winzeler (Federal Research Station for Agroecology and Agriculture, Zurich-Reckenholz) Editorial staff: Thomas Alföldi (FiBL, Frick) Graphics: Daniel Gorba (FiBL, Frick) Translation: Robert Haward (English version), Manuel Perret (French version), Jessamjin Miedema and Anne Bruinsma (Dutch version), Eric Wyss and Markus Bär(German version) Cover photographs: Emasculation of a flower of cauliflower, Jan Velema (Vitalis Biologische Zaden BV) This dossier is available in English, German, French, and Dutch Price: 5 Euro ISBN Nr. 3-906081-13-3 Sale: FiBL © FiBL
  • 24. Allele One member of a pair or series of genes that occupy a specific position on a spe- cific chromosome, the «form» in which a gene can occur in a plant. Callus A callus is proliferating tissue consisting of non-differentiated cells. Chloroplasts The green organelles of a plant cell that fix carbondioxide using solar energy: photosynthesis. This provides the plant with energy carriers like sugars and ATP. They have their own DNA, which is pre- dominantly inherited from the mother, but they still rely on genetic material stored in the nucleus. Chromosome A chromosome is a continuous strand of duplex DNA, containing many genes. Most multicellular organisms have sever- al chromosomes, which together com- prise the genome. Sexually reproducing organisms have two copies of each chro- mosome, one from the each parent. Cross-pollination The transfer of pollen from one plant to the flowers of a different plant. Cytoplasm The interior of a plant cell harbours many compartments: the nucleus, mitochon- dria, chloroplasts, vacuoles and many vesicular structures. The fluid cell in between these compartments is called the cytoplasm. DNA DNA (deoxyribonucleic acid) is a double- stranded helix of nucleotides which car- ries the genetic information of a cell. It encodes the information for the produc- tion of proteins and is able to self-repli- cate. Enzyme Enzymes are proteins that carry out bio- chemical reactions (or act as catalysts) inside the cell. Gel electrophoresis DNA is fragmented by restriction enzymes (molecular scissors) and trans- ferred to an agarose gel. The DNA frag- ments move through the gel due to the electric field applied to the gel. The length of a DNA fragment determines its speed of movement through the gel. The result- ing banded pattern of slow-moving and fast-moving DNA fragments is used to identify those DNA bands which are linked to the desired trait of a plant. Gene A gene is a hereditary unit that can be assigned of a sequence of DNA which occupies a specific position or locus in the genome. A gene codes for a protein or RNA which is responsible for (part of) a certain trait. Genotype The genotype of an individual is the genetic make-up, determined by the alle- les present on its chromosomes. Heterosis It’s the result of cross breeding two differ- ent and distant related plants of the same species. The offspring are more vigorous and often more disease resistant. Heterozygous Heterozygous means an organism has two different alleles on its homologous chro- mosomes. Homozgous An organism is homozygous if it has the same allele on both of its homologous chromosomes. Isozyme All proteins with similar enzymatic activ- ity. Marker DNA fragment that is polymorphic in size or sequence. It can be used to differentiate between genetic material of varieties and species that are used in crosses. Mitochondria Mitochondria are the organelles inside cells where aerobic respiration occurs. They have their own DNA which is pre- dominantly inherited from the mother, but they still rely on genetic material stored in the nucleus. Phenotype The phenotype is the combination of the observable characteristics of an organism. This should reflect the genotype, which is an organisms genetic composition. The phenotype results from the interaction of the genotype with the environment. Polyploidy The chromosomal constitution of a cell containing multiples of the normal num- ber of chromosomes. Protein The translation product of a gene. It can be visualized as a string of aminoacids, which are ordered through the definition of the genetic code of a particular gene. Protoplast Isolated protoplasts are «naked» cells because the cell wall has been removed by either a mechanical or an enzymatic process. RNA RNA (ribonucleic acid) is the messenger molecule that is transcribed from a gene and subsequently translated into protein. Self-pollination The transfer of pollen from the anther to the style of the flower of same plant, resulting in «selfing» of a breeding line. Glossary