ENZYME INHIBITION & FACTORS AFFECTING THE VELOCITY OF ENZYME ACTION

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YESANNALECTURER en YESANNA
ENZYME INHIBITION & FACTORS AFFECTING THE VELOCITY OF ENZYME ACTION
Factors affecting enzyme activity 
Gandham. Rajeev
Factors affecting enzyme activity 
• The contact between the enzyme and substrate is the most 
essential pre-requisite for enzyme activity 
1. Enzyme concentration 
2. Substrate concentration 
3. Temperature 
4. Hydrogen ion concentration (pH) 
5. Product concentration 
6. Presence of activators 
7. Time 
8. Light & radiation
Enzyme concentration 
• Enzyme Concentration: 
• Rate of a reaction or velocity (V) is directly proportional to the enzyme 
concentration, when sufficient substrate is present. 
• Velocity of reaction is increased proportionately with the concentration of 
enzyme, provided substrate concentration is unlimited
• Substrate is a molecule on which enzyme acts. 
• Velocity (Reaction rate) refers to change in the concentration of 
substrate or reaction product (s) per unit time. 
• It is expressed as moles/liter/sec. 
• Maximum velocity (Vmax): 
• It refers to maximum change in the product or substrate concentration 
at a given enzyme concentration.
• Vmax = Kcat (e) 
• e-enzyme concentration & Kcat is catalytic rate constant. 
• Kcat (catalytic rate constant) – defined as the number of substrates 
molecules formed by each enzyme molecule in unit time. 
• Expressed as moles produced/mol enzyme/time.
Effect of enzyme concentration
Effect of Substrate Concentration 
• Increase in the substrate concentration gradually increases the 
velocity of enzyme reaction within the limited range of substrate 
levels. 
• A rectangular hyperbola is obtained when velocity is plotted against 
the substrate concentration 
• Three distinct phases of the reaction are observed in the graph (A-linear; 
B-curve; C-almost unchanged.
Effect of Substrate Concentration
Explanation 
• At lower concentrations of substrate (point A in the curve), some enzyme 
molecules are remaining idle. 
• As substrate is increased, more and more enzyme molecules are working. 
• At half-maximal velocity, 50% enzymes are attached with substrate (point B 
in the curve). 
• As more substrate is added, all enzyme molecules are saturated (point C).
• Further increase in substrate cannot make any effect in the reaction 
velocity (point D). 
• The maximum velocity obtained is called Vmax. 
• It represents the maximum reaction rate attainable in presence of excess 
substrate (at substrate saturation level).
Michaelis-Mention Equation 
• Michaelis-Mention equation is a rate equation for reaction kinetics in 
enzyme catalysed reaction 
• Written as 
V max (S) 
Km + S 
V =
Michaelis-mention Plot 
• The velocity of enzyme catalysed reactions is altered as the substrate 
concentration is increased. 
• First order reaction: 
• At low substrate concentration, velocity increases proportionally as 
the concentration of the substrate is increased.
• Mixed order reaction: 
• When the concentration of the substrate is further increased (at mid 
substrate concentration), the velocity increases, but not 
proportionally to substrate concentration. 
• Zero order reaction: 
• At high substrate concentration, the velocity is maximum & is 
independent of substrate concentration.
Enzyme kinetics & Km value 
• The enzyme (E) reacts with substrate (S) to form unstable enzyme-substrate 
(ES) complex. 
• The ES complex is either converted to product (P) or can dissociate 
back to enzyme (E) & substrate (S). 
Substrate (S) + Enzyme (E) Enzyme substrate (ES) Product (P) + Enzyme (E)
K1 K3 
E + S ES E + P 
K2 
• K1,K2 & K3 are velocity constants. 
• Km, Michaelis-mention constant is given by the formula… 
Km = 
K2 + K3 
K1
• Michaelis-mention set up mathematical expressions for the rate of all the three 
reactions in the equation. 
• V as the initial rate of reaction (velocity) 
• S as the initial concentration of the substrate 
• V max as the maximum velocity attained with high substrate concentration when all 
the enzyme molecules are occupied. 
• Km as Michaelis-mention constant 
V = 
V max (S) 
Km + (S)
• Measured velocity (V) is equal to ½ Vmax. 
• So, 
½ V max = 
V max (S) 
Km + (S) 
Km + (S) = 
2V max (S) 
V max 
Km + (S) = 2 (S) 
Km = (S) 
K stands for constant & M stands for Michaelis
Michaelis constant 
• The formation of enzyme - substrate complex is a reversible reaction, while the 
breakdown of the complex to enzyme + product is irreversible. 
• 50% velocity in Y axis is extrapolated to the corresponding point on X-axis, which gives 
the numerical value of Km. 
• The lesser the numerical value of Km, the affinity of the enzyme for the substrate is 
more. 
• E.g: Km of glucokinase is 10 mmol/L and hexokinase is 0.05 mmol/L. 
• 50% molecules of hexokinase are saturated even at a lower concentration of glucose. 
• Hexokinase has more affinity for glucose than glucokinase.
Effect of enzyme concentration on Km
Salient features of Km 
• Km value is substrate concentration (expressed in moles/L) at half-maximal velocity. 
• It denotes that 50% of enzyme molecules are bound with substrate molecules at 
that particular substrate concentration. 
• Km is independent of enzyme concentration. 
• If enzyme concentration is doubled, the Vmax will be double. 
• But the Km will remain exactly same. 
• In other words, irrespective of enzyme concentration, 50% molecules are bound to 
substrate at that particular substrate concentration.
• Km is the Signature of the Enzyme. 
• Km value is thus a constant for an enzyme. 
• It is the characteristic feature of a particular enzyme for a specific 
substrate. 
• The affinity of an enzyme towards its substrate is inversely related to 
the dissociation constant, Kd for the ES complex. 
• Km denotes the affinity of enzyme for substrate. 
• The lesser the numerical value of Km, the affinity of the enzyme for the 
enzyme for the substrate is more.
Double reciprocal plot 
• Sometimes it is impractical to achieve high substrate concentrations to reach 
the maximal velocity conditions. 
• So, ½Vmax or Km may be difficult to determine. 
• The experimental data at lower concentrations is plotted as reciprocals. 
• The straight line thus obtained is extrapolated to get the reciprocal of Km. 
• Called as Lineweaver–Burk Plot or Double Reciprocal Plot which can be 
derived from the Michaelis-Menten equation
Lineweaver-Burk plot
Effect of Temperature 
• The velocity of enzyme reaction increases when temperature of the medium 
is increased; reaches a maximum and then falls (Bell shaped curve). 
• The temperature at which maximum amount of the substrate is converted to 
the product per unit time is called the optimum temperature. 
• Temperature is increased, more molecules get activation energy, or 
molecules are at increased rate of motion. 
• Their collision probabilities are increased and so the reaction velocity is 
enhanced.
Temperature coefficient Q10 
• The temperature coefficient (Q10) is the factor by which the rate of 
catalysis is increased by a rise in 10°C. 
• Generally, the rate of reaction of most enzymes will double by a rise in 
10°C. 
• When temperature is more than 50°C, heat denaturation and 
consequent loss of tertiary structure of protein occurs. 
• Activity of the enzyme is decreased.
• Most human enzymes have the optimum temperature around 37°C. 
• Certain bacteria living in hot springs will have enzymes with optimum 
temperature near 100°C.
Effect of Temperature
Effect of pH 
• Each enzyme has an optimum pH (usually pH between 6 and 8). 
• On both sides of which the velocity will be drastically reduced. 
• The graph will show a bell shaped curve 
• The pH decides the charge on the amino acid residues at the active site. 
• The net charge on the enzyme protein would influence substrate binding and 
catalytic activity. 
• Optimum pH may vary depending on the temperature, concentration of 
substrate, presence of ions etc. 
• Pepsin (optimum pH 1-2); ALP (optimum pH 9-10) & acid phosphatase (4-5)
Effect of pH
Effect of product concentration 
• The accumulation of reaction products generally decreases the enzyme 
velocity. 
• For certain enzymes, the products combine with the active site of enzyme 
and form a loose complex and, thus, inhibit the enzyme activity. 
• In the living system, this type of inhibition is generally prevented by a quick 
removal of products formed
Effect of activators 
• Some of the enzymes require certain inorganic metallic cations like Mg2+, 
Mn2+, Zn2+, Ca2+, Co2+, Cu2+, Na+, K+, for their optimum activity 
• Anions are also needed for enzyme activity e.g. chloride ion for amylase 
• Metals function as activators of enzyme velocity through various mechanisms 
combining with the substrate, formation of ES-metal complex, direct 
participation in the reaction and bringing a conformational change in the 
enzyme.
• Two categories of enzymes requiring metals for their activity 
• Metal-activated enzymes 
• Metalloenzyme 
• Metal-activated enzymes: 
• The metal is not tightly held by the enzyme and can be exchanged 
easily with other ions. 
• e.g. ATPase (Mg2+ and Ca2+) & Enolase (Mg2+)
• Metalloenzyme: 
• These enzymes hold the metals rather tightly which are not readily 
exchanged. 
• e.g. Alcohol dehydrogenase, carbonic anhydrase, alkaline phosphatase, 
carboxypeptidase and aldolase contain zinc. 
• Phenol oxidase (copper) 
• Pyruvate oxidase (manganese) 
• Xanthine oxidase (molybdenum) 
• Cytochrome oxidase (iron and copper)
Effect of time 
• Under ideal and optimal conditions (like pH, temperature etc.), the time 
required for an enzyme reaction is less. 
• Variations in the time of the reaction are generally related to the 
alterations in pH and temperature.
Effect of light and radiation 
• Exposure of enzymes to ultraviolet, beta, gamma & X-rays 
inactivates certain enzymes due to the formation of peroxides. 
e.g. UV rays inhibit salivary amylase activity
Enzyme inhibition
Enzyme inhibitor 
• Enzyme inhibitor is defined as a substance, which binds with the enzyme 
and brings about a decrease in catalytic activity of that enzyme. 
• They are usually specific and they work at low concentrations 
• They block the enzyme but they do not usually destroy it 
• Many drugs and poisons are inhibitors of enzymes in the nervous system
Type of Enzyme Inhibitors 
Reversible 
Irreversible 
Type of 
Inhibitors 
Competitive 
Uncompetitive 
Non- Competitive 
Active Site 
Directed 
Suicide / kcat 
Inhibitors
Reversible inhibition 
• The inhibitor binds non-covalently with enzyme and the enzyme inhibition 
can be reversed if the inhibitor is removed. 
• Binding is weak and thus, inhibition is reversible. 
• Do not cause any permanent changes in the enzyme 
• Subtypes: 
• Competitive & Non-competitive Inhibition
Competitive inhibition 
• The inhibitor (I) molecules resembles the real substrate (S) 
• Also called as substrate analogue inhibition 
• Binds to active site – forms EI complex. 
• EI complex cannot rive rise to product formation. 
• As long as the competitive inhibitor holds the active site, the enzyme is not available for 
the substrate to bind. 
• Relative concentrations of S, I determine inhibition. 
E 
ES 
EI 
E + P 
No product formation
Binding of S & I in different Situations 
• Classical Competitive Inhibition (S & I compete for the same binding 
site) 
Enzyme
• Binding of I to a distinct inhibitor site causes a conformational change in 
the enzyme that distorts or masks the S binding site or vice versa. 
I S 
Enzyme 
I 
Enzyme 
S 
I 
Enzyme 
S
• A competitive inhibitor diminishes the rate of catalysis by reducing the 
proportion of enzyme molecules bound to a substrate. 
• Competitive inhibition can be relieved by increasing the substrate 
concentration & maximum velocity is regained. 
• A higher substrate concentration is therefore needed to achieve a 
halfmaximum rate, Km increases 
• High concentrations of the substrate displace the inhibitor again. 
• The V max, not influenced by this type of inhibition.
• E. g. Malonate – structural analog of succinate-inhibits succinate 
dehydrogenase.
The effect of enzyme inhibition 
Succinate 
Fumarate + 2H++ 2e- 
Succinate dehydrogenase 
CH2COOH 
CHCOOH 
COOH 
CH2COOH CHCOOH 
COOH 
CH2 
Malonate
• The compounds malonic acid, glutaric acid and oxalic acid, have structural 
similarity with succinic acid and compete with the substrate for binding at 
the active site of SDH. 
• Antimetabolites: 
• These chemical compounds that block the metabolic reactions by their 
inhibitory action on enzymes. 
• Antimetabolites are usually structural analogues of substrates and thus are 
competitive inhibitors. 
• They are in use for cancer therapy, gout etc.
Examples of competitive inhibition 
Enzyme Substrate Competitive inhibitor 
Succinate Dehydrogenase Succinate Malonate 
Dihydrofolate Reductase 7,8-dihydrofolate Aminopterin 
Xanthine Oxidase Hypoxanthine Allopurinol 
Acetyl cholinesterase Acetylcholine Succinylcholine 
Lactate Dehydrogenase Lactate Oxamate 
HMG CoA Reductase HMG Co A HMG
Reversible, Competitive Inhibitors
In the presence of a competitive inhibitor Km increases 
V max unchanged 
No inhibitor 
+ C Inhibitor 
Vmax 
½ Vmax 
Km Kmapp 
[s] 
v
Lineweaver Burk plot 
[I]2 
[I]1 
1 
Kmapp 
1 
Km 
• In the presence of a 
competitive inhibitor Km 
increases 
• V max unchanged
Non-Competitive Inhibition 
• The inhibitor binds at a site other than the active site on the enzyme & 
causes conformational changes on enzymes or some times it may react 
with functional group at the active site & inactivates the enzyme. 
• This binding impairs the enzyme function. 
• Inhibitor has no structural resemblance with the substrate. 
• There is no competition for the active site of the enzyme molecule.
• There usually exists a strong affinity for the inhibitor to bind at the 
second site. 
• The inhibitor does not interfere with the enzyme-substrate binding. 
• But the catalysis is prevented, possibly due to a distortion in the enzyme 
conformation 
• The inhibitor generally binds with the enzyme as well as the ES complex. 
• Km value is unchanged & V max is lowered.
• Heavy metal ions (Ag+, Pb2+, Hg2+ etc.) can non-competitively inhibit the enzymes by 
binding with cysteinyl sulfhydryl groups & inactivates the enzymes. 
• Heavy metals also form covalent bonds with carboxyl groups & histidine, results in 
irreversible inhibition. 
• Non-competitive inhibition is also called as enzyme poisons 
E + S ES 
+ 
I 
EI + S 
E + P 
+ 
I 
EIS
Non-Competitive Inhibition 
Enzyme Enzyme 
Enzyme Enzyme 
S 
I 
S 
I
Non-Competitive Inhibition 
No inhibitor 
+ NC Inhibitor 
Vmax 
Vmax i 
½ Vmax 
Km [s] 
v 
½ Vmax i 
Vmax = Decreases. 
Km = Unchanged
Lineweaver – Burk Plot 
[I]2 
[I]1 
No Inhibitor 
1 
Vmax 
1 
Vmaxi 
1 
Km 
1/[s] 
1/v 
• Km value is unchanged 
• V max is lowered
Comparison between competitive & Non-competitive inhibition 
Competitive Inhibition Non-competitive Inhibition 
Acting on Active site May or may not 
Structure of inhibitor Substrate analogue Unrelated molecule 
Inhibition is Reversible Generally Irreversible 
Excess Substrate Inhibition Relieved No effect 
Km Increased No Change 
V max No Change Decreased 
Significance Drug Action Toxicological
Uncompetitive Inhibition 
• Here inhibitor does not have any affinity for the active site of enzyme. 
• Inhibitor binds only with enzyme-substrate complex; but not with free 
enzyme. 
• Both V max and Km are decreased
• UC Inhibition is rare in single-substrate reactions. 
• E.g. Phenylalanine inhibits alkaline phosphatase in intestinal cells 
• It is common in multi-substrate reactions 
E + S E S E + P 
+ 
I 
ESI
Uncompetitive Inhibition 
Enzyme 
Enzyme 
S 
I 
Enzyme 
S
Uncompetitive Inhibition 
No inhibitor 
+ UC Inhibitor 
Vmax 
Vmax i 
½ Vmax 
Km [s] 
½ Vmax i 
Vmax = Decreases 
Km = Decreases 
Kmapp 
v
Irreversible inhibition 
• In this type, Inhibitor binds at or near the active site of the enzyme irreversibly, 
usually by covalent bonds, so that it can’t subsequently dissociate from the enzyme 
• The I destroys as essential functional group on the enzyme that participates in 
normal S binding or catalytic action. 
• As a result the enzyme is permanently inactive 
• Compounds which irreversibly denature the enzyme protein or cause non-specific 
inactivation of the active site are not usually regarded as irreversible inhibitors.
Examples 
• These inhibitors are toxic poisonous substances. 
• Iodoacetate: 
• It is an irreversible inhibitor of the enzymes like papain and glyceraldehyde 3- 
phosphate dehydrogenase 
• Iodoacetate combines with sulfhydryl (-SH) groups at the active site of these enzymes 
and makes them inactive. 
• Diisopropyl fluorophosphafe (DFP) is a nerve gas developed by the Germans during 
Second World War. 
• DFP irreversibly binds with enzymes containing serine at the active site, e.g. serine 
proteases, acetylcholine esterase.
Examples 
• DFP (Diisopropylphosphofluoridate) is a nerve poison. 
• It inactivates acetylcholinesterase that plays an important role in the 
transmission of nerve impulses. 
OCH(CH3)2 
OCH(CH3)2 
E CH2-OH + F—P=O E CH2-O- F—P=O + HF 
OCH(CH3)2 
OCH(CH3)2 
DFP Catalytically inactive 
enzyme
• Disulfiram (Antabuse)s a drug used in the treatment of alcoholism. 
• lt irreversibly inhibits the enzyme aldehyde dehydrogenase. 
• Alcohol addicts, when treated with disulfiram become sick due to the 
accumulation of acetaldehyde, leading to alcohol avoidance
Suicidal inhibition 
• This is a special type of irreversible inhibition. 
• Also called as mechanism based inactivation. 
• In this case, the original inhibitor (the structural analogue/competitive 
inhibitor) is converted to a more effective inhibitor with the help of same 
enzyme that ought to be inhibited. 
• The formed inhibitor binds irreversibly with the enzyme. 
• Allopurinol, an inhibitor of xanthine oxidase, gets converted to alloxanthine, a 
more effective inhibitor of this enzyme.
Suicidal inhibition 
• A suicide inhibitor is a relatively inert molecule that is transformed by an enzyme at 
its active site into a reactive compound that irreversibly inactivates the enzyme 
• They are substrate analogs designed so that via normal catalytic action of the 
enzyme, a very reactive group is generated. 
• The latter forms a covalent bond with a nearby functional group within the active 
site of the enzyme causing irreversible inhibition. 
• Such inhibitors are called suicide inhibitors because the enzyme appears to commit 
suicide. 
• e.g. FdUMP is a suicide inhibitor of thymidylate synthase.
• The use of certain purine and pyrimidine analogues in cancer therapy is 
also explained on the basis suicide inhibition. 
• 5-fluorouracil gets converted to fluorodeoxyuridylate which inhibits the 
enzyme thymidylate synthase, and thus nucleotides synthesis
During thymidylate synthesis, N5,N10- methyleneTHF is converted to 7,8-dihydrofolate; 
methyleneTHF is regenerated in two steps
Allosteric regulation 
• The catalytic activity of certain regulatory enzymes is modified by certain low 
molecular weight substances or molecules known as allosteric effectors. 
• Allosteric enzyme has one catalytic site where the substrate binds and another 
separate allosteric site where the modifier binds (allo = other) 
• Allosteric and substrate binding sites may or may not be physically adjacent. 
• The binding of the regulatory molecule can either enhance the activity of the enzyme 
(allosteric activation), or inhibit the activity of the enzyme (allosteric inhibition).
• The binding of substrate to one of the subunits of the enzyme may enhance 
substrate binding by other subunits. 
• This effect is said to be positive co-operativity 
• If the binding of substrate to one of the subunits decreases the activity of 
substrate binding by other sites, the effect is called negative co-operativity. 
• In most cases, a combination is observed, resulting in a sigmoid shaped 
curve
The switch: Allosteric inhibition 
Allosteric means “other site” 
E 
Active site 
Allosteric 
site
Switching off 
• These enzymes have two 
receptor sites 
• One site fits the substrate like 
other enzymes 
• The other site fits an inhibitor 
molecule 
Inhibitor fits into 
allosteric site 
Substrate 
cannot fit 
into the 
active site 
Inhibitor 
molecule
Allosteric inhibition
Salient Features, Allosteric Inhibition 
• The inhibitor is not a substrate analogue 
• It is partially reversible, when excess substrate is added. 
• Km is usually increased & V max is reduced. 
• The effect of allosteric modifier is maximum at or near substrate 
concentration equivalent to Km.
• When an inhibitor binds to the allosteric site, the configuration of 
catalytic site is modified such that substrate cannot bind properly. 
• Most allosteric enzymes possess quaternary structure. 
• They are made up of subunits, e.g. Aspartate transcarbamoylase has 6 
subunits and pyruvate kinase has 4 subunits
Allosteric enzymes 
Enzyme Allosteric Inhibitor Allosteric Activator 
ALA synthase Heme 
Aspartate transcarbamoylase CTP ATP 
HMGCoA-reductase Cholesterol 
Phosphofructokinase ATP, citrate AMP, F-2,6-P 
Pyruvate carboxylase ADP AcetylCoA 
Acetyl CoA carboxylase AcylCoA Citrate 
Citrate synthase ATP 
Carbamoyl phosphate synthetase I NAG 
Carbamoyl phosphate synthetase II UTP
Importance of Enzyme Inhibition 
• For understanding the regulation of enzyme activity within the living cells 
• To elucidate the kinetic mechanism of an enzyme catalyzing a multi-substrate 
reaction 
• Useful in elucidating the cellular metabolic pathways by causing 
accumulation of intermediates 
• Identification of the catalytic groups at the active site 
• Provide information about substrate specificity of the enzyme
Regulation of enzyme activity 
• Allosteric regulation 
• Activation of latent enzymes 
• Compartmentation of metabolic pathways 
• Control of enzyme synthesis 
• Enzyme degradation 
• lsoenzymes
Allosteric Regulation or Allosteric Inhibition 
• Enzymes possess additional sites, known as allosteric sites besides the active 
site. 
• Such enzymes are known as allosteric enzymes. 
• The allosteric sites are unique places on the enzyme molecule 
• Allosteric effectors: 
• The catalytic activity of certain regulatory enzymes is modified by certain 
low molecular weight substances or molecules known as allosteric effectors 
or modifiers bind at the allosteric site and regulate the enzyme activity.
• The allosteric effectors may be positive or negative effectors 
• The enzyme activity is increased when a positive (+) allosteric effector 
binds at the allosteric site known as activator site. 
• A negative (-) allosteric effector binds at the allosteric site called inhibitor 
site and inhibits the enzyme activity. 
• Classes of allosteric enzyme: 
• They are divided into two classes based on the influence of allosteric 
effector on Km and V max
• K-class of allosteric enzymes: 
• The allosteric inhibitor increases the Km and not the V max. 
• Double reciprocal plots, similar to competitive inhibition are obtained e.g. 
phosphofructokinase. 
• V-class of allosteric enzymes: 
• The allosteric inhibitor decreases the V max and not the Km. 
• Double reciprocal plots resemble that of non-competitive inhibition e.g. 
acetyl CoA carboxylase
Feedback regulation 
• The process of inhibiting the first step by the final product, in a series of enzyme 
catalysed reactions of a metabolic pathway is referred to as feedback regulation. 
• The very first step (A to B) by the enzyme is the most effective for regulating the 
pathway, by the final end product D. 
• This type of control is often called negative feedback regulation 
A B C D
Feedback regulation 
Carbamoyl phosphate + Aspartate 
Aspartate transcarbamylase 
Carbamoyl Aspartate + Pi 
Cytidine triphosphate (CTP) 
Feedback control
Activation of latent enzymes 
• Some enzymes are synthesized as Proenzymes or zymogens which undergo irreversible 
covalent activation by the breakdown of one or more peptide bonds 
• Chymotrypsinogen pepsinogen and plasminogen, are respectively- converted to the 
active enzymes chymotrypsin, pepsin and plasmin. 
• Certain enzymes exist in the active and inactive forms which are interconvertible 
• The inter-conversion is brought about by the reversible covalent modifications, namely 
phosphorylation and dephosphorylation, and oxidation and reduction of disulfide bonds
Examples 
• There are some enzymes which are active in dephosphorylated state 
and become inactive when phosphorylated e.g. glycogen synthase, 
acetyl CoA carboxylase. 
• A few enzymes are active only with sulfhydryl (-SH) groups 
• E.g. succinate dehydrogenase, urease. 
• Glutathione bring about the stability of these enzymes.
Compartmentation 
• Generally, the synthetic (anabolic) and breakdown (catabolic) pathways 
are operative in different cellular organelle. 
• E.g. Enzymes for fatty acid synthesis are found in the cytosol whereas 
enzymes for fatty acid oxidation are present in the mitochondria
Control of enzyme synthesis 
• Most of the enzymes, the rate limiting ones, are present in very low concentration. 
• Many rate limiting enzymes have short half-lives 
• This helps in the efficient regulation of the enzyme levels. 
• Constitutive enzymes (house-keeping enzymes)-The levels of which are not controlled 
and remain fairly constant. 
• Adaptive enzymes-Their concentrations increase or decrease as per body needs and are 
well-regulated. 
• The synthesis of enzymes (proteins) is regulated by the genes.
Induction and repression 
• Induction is used to represent increased synthesis of enzyme while repression indicates its 
decreased synthesis. 
• Induction or repression which ultimately determines the enzyme concentration at the 
gene level through the mediation of hormones or other substance. 
• E.g of Induction: The hormone insulin induces the synthesis of glycogen synthetase, 
glucokinase, phosphofructokinase and pyruvate kinase. 
• All these enzymes are involved in the utilization of glucose. 
• The hormone cortisol induces the synthesis of many enzymes e.g. pyruvate carboxylase, 
tryptophan oxygenase and tyrosine aminotransferase
• Examples of repression: 
• In many instances, substrate can repress the synthesis of enzyme. 
• Pyruvate carboxylase is a key enzyme in the synthesis of glucose from 
non-carbohydrate sources like pyruvate and amino acids. 
• lf there is sufficient glucose available, there is no necessity for its 
synthesis. 
• This is achieved through repression of pyruvate carboxylase by glucose.
Enzyme degradation 
• Every enzyme has half-life. 
• It is in days while for others in hours or in minutes, 
• e.g. LDH4 - 5 to 6 days; 
• LDH1 - 8 to 12 hours; 
• Amylase -3 to 5 hours 
• The key and regulatory enzymes are most rapidly degraded. 
• lf not needed, they immediately disappear and, when required, they are
Units of enzyme activity 
• Katal: 
• One kat denotes the conversion of one mole substrate per second (mol/sec). 
• Activity may also be expressed as millikatals (mkat), microkatals (μkat) 
• International Units (lU): 
• One Sl unit or International Unit (lU) is defined as the amount of enzyme activity 
that catalyses the conversion of one micromol of substrate per minute. 
• Sl units and katal are interconvertible
Non-protein enzymes 
• Ribozymes are a group of ribonucleic acids that function as biological 
catalysts, and they are regarded as non-protein enzymes. 
• RNA molecules are known to adapt a tertiary structure just as in the 
case of proteins 
• The specific conformation of RNA may be responsible for its function 
as biocatalyst.
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ENZYME INHIBITION & FACTORS AFFECTING THE VELOCITY OF ENZYME ACTION

  • 2. Factors affecting enzyme activity Gandham. Rajeev
  • 3. Factors affecting enzyme activity • The contact between the enzyme and substrate is the most essential pre-requisite for enzyme activity 1. Enzyme concentration 2. Substrate concentration 3. Temperature 4. Hydrogen ion concentration (pH) 5. Product concentration 6. Presence of activators 7. Time 8. Light & radiation
  • 4. Enzyme concentration • Enzyme Concentration: • Rate of a reaction or velocity (V) is directly proportional to the enzyme concentration, when sufficient substrate is present. • Velocity of reaction is increased proportionately with the concentration of enzyme, provided substrate concentration is unlimited
  • 5. • Substrate is a molecule on which enzyme acts. • Velocity (Reaction rate) refers to change in the concentration of substrate or reaction product (s) per unit time. • It is expressed as moles/liter/sec. • Maximum velocity (Vmax): • It refers to maximum change in the product or substrate concentration at a given enzyme concentration.
  • 6. • Vmax = Kcat (e) • e-enzyme concentration & Kcat is catalytic rate constant. • Kcat (catalytic rate constant) – defined as the number of substrates molecules formed by each enzyme molecule in unit time. • Expressed as moles produced/mol enzyme/time.
  • 7. Effect of enzyme concentration
  • 8. Effect of Substrate Concentration • Increase in the substrate concentration gradually increases the velocity of enzyme reaction within the limited range of substrate levels. • A rectangular hyperbola is obtained when velocity is plotted against the substrate concentration • Three distinct phases of the reaction are observed in the graph (A-linear; B-curve; C-almost unchanged.
  • 9. Effect of Substrate Concentration
  • 10. Explanation • At lower concentrations of substrate (point A in the curve), some enzyme molecules are remaining idle. • As substrate is increased, more and more enzyme molecules are working. • At half-maximal velocity, 50% enzymes are attached with substrate (point B in the curve). • As more substrate is added, all enzyme molecules are saturated (point C).
  • 11. • Further increase in substrate cannot make any effect in the reaction velocity (point D). • The maximum velocity obtained is called Vmax. • It represents the maximum reaction rate attainable in presence of excess substrate (at substrate saturation level).
  • 12. Michaelis-Mention Equation • Michaelis-Mention equation is a rate equation for reaction kinetics in enzyme catalysed reaction • Written as V max (S) Km + S V =
  • 13. Michaelis-mention Plot • The velocity of enzyme catalysed reactions is altered as the substrate concentration is increased. • First order reaction: • At low substrate concentration, velocity increases proportionally as the concentration of the substrate is increased.
  • 14. • Mixed order reaction: • When the concentration of the substrate is further increased (at mid substrate concentration), the velocity increases, but not proportionally to substrate concentration. • Zero order reaction: • At high substrate concentration, the velocity is maximum & is independent of substrate concentration.
  • 15. Enzyme kinetics & Km value • The enzyme (E) reacts with substrate (S) to form unstable enzyme-substrate (ES) complex. • The ES complex is either converted to product (P) or can dissociate back to enzyme (E) & substrate (S). Substrate (S) + Enzyme (E) Enzyme substrate (ES) Product (P) + Enzyme (E)
  • 16. K1 K3 E + S ES E + P K2 • K1,K2 & K3 are velocity constants. • Km, Michaelis-mention constant is given by the formula… Km = K2 + K3 K1
  • 17. • Michaelis-mention set up mathematical expressions for the rate of all the three reactions in the equation. • V as the initial rate of reaction (velocity) • S as the initial concentration of the substrate • V max as the maximum velocity attained with high substrate concentration when all the enzyme molecules are occupied. • Km as Michaelis-mention constant V = V max (S) Km + (S)
  • 18. • Measured velocity (V) is equal to ½ Vmax. • So, ½ V max = V max (S) Km + (S) Km + (S) = 2V max (S) V max Km + (S) = 2 (S) Km = (S) K stands for constant & M stands for Michaelis
  • 19. Michaelis constant • The formation of enzyme - substrate complex is a reversible reaction, while the breakdown of the complex to enzyme + product is irreversible. • 50% velocity in Y axis is extrapolated to the corresponding point on X-axis, which gives the numerical value of Km. • The lesser the numerical value of Km, the affinity of the enzyme for the substrate is more. • E.g: Km of glucokinase is 10 mmol/L and hexokinase is 0.05 mmol/L. • 50% molecules of hexokinase are saturated even at a lower concentration of glucose. • Hexokinase has more affinity for glucose than glucokinase.
  • 20. Effect of enzyme concentration on Km
  • 21. Salient features of Km • Km value is substrate concentration (expressed in moles/L) at half-maximal velocity. • It denotes that 50% of enzyme molecules are bound with substrate molecules at that particular substrate concentration. • Km is independent of enzyme concentration. • If enzyme concentration is doubled, the Vmax will be double. • But the Km will remain exactly same. • In other words, irrespective of enzyme concentration, 50% molecules are bound to substrate at that particular substrate concentration.
  • 22. • Km is the Signature of the Enzyme. • Km value is thus a constant for an enzyme. • It is the characteristic feature of a particular enzyme for a specific substrate. • The affinity of an enzyme towards its substrate is inversely related to the dissociation constant, Kd for the ES complex. • Km denotes the affinity of enzyme for substrate. • The lesser the numerical value of Km, the affinity of the enzyme for the enzyme for the substrate is more.
  • 23. Double reciprocal plot • Sometimes it is impractical to achieve high substrate concentrations to reach the maximal velocity conditions. • So, ½Vmax or Km may be difficult to determine. • The experimental data at lower concentrations is plotted as reciprocals. • The straight line thus obtained is extrapolated to get the reciprocal of Km. • Called as Lineweaver–Burk Plot or Double Reciprocal Plot which can be derived from the Michaelis-Menten equation
  • 25. Effect of Temperature • The velocity of enzyme reaction increases when temperature of the medium is increased; reaches a maximum and then falls (Bell shaped curve). • The temperature at which maximum amount of the substrate is converted to the product per unit time is called the optimum temperature. • Temperature is increased, more molecules get activation energy, or molecules are at increased rate of motion. • Their collision probabilities are increased and so the reaction velocity is enhanced.
  • 26. Temperature coefficient Q10 • The temperature coefficient (Q10) is the factor by which the rate of catalysis is increased by a rise in 10°C. • Generally, the rate of reaction of most enzymes will double by a rise in 10°C. • When temperature is more than 50°C, heat denaturation and consequent loss of tertiary structure of protein occurs. • Activity of the enzyme is decreased.
  • 27. • Most human enzymes have the optimum temperature around 37°C. • Certain bacteria living in hot springs will have enzymes with optimum temperature near 100°C.
  • 29. Effect of pH • Each enzyme has an optimum pH (usually pH between 6 and 8). • On both sides of which the velocity will be drastically reduced. • The graph will show a bell shaped curve • The pH decides the charge on the amino acid residues at the active site. • The net charge on the enzyme protein would influence substrate binding and catalytic activity. • Optimum pH may vary depending on the temperature, concentration of substrate, presence of ions etc. • Pepsin (optimum pH 1-2); ALP (optimum pH 9-10) & acid phosphatase (4-5)
  • 31. Effect of product concentration • The accumulation of reaction products generally decreases the enzyme velocity. • For certain enzymes, the products combine with the active site of enzyme and form a loose complex and, thus, inhibit the enzyme activity. • In the living system, this type of inhibition is generally prevented by a quick removal of products formed
  • 32. Effect of activators • Some of the enzymes require certain inorganic metallic cations like Mg2+, Mn2+, Zn2+, Ca2+, Co2+, Cu2+, Na+, K+, for their optimum activity • Anions are also needed for enzyme activity e.g. chloride ion for amylase • Metals function as activators of enzyme velocity through various mechanisms combining with the substrate, formation of ES-metal complex, direct participation in the reaction and bringing a conformational change in the enzyme.
  • 33. • Two categories of enzymes requiring metals for their activity • Metal-activated enzymes • Metalloenzyme • Metal-activated enzymes: • The metal is not tightly held by the enzyme and can be exchanged easily with other ions. • e.g. ATPase (Mg2+ and Ca2+) & Enolase (Mg2+)
  • 34. • Metalloenzyme: • These enzymes hold the metals rather tightly which are not readily exchanged. • e.g. Alcohol dehydrogenase, carbonic anhydrase, alkaline phosphatase, carboxypeptidase and aldolase contain zinc. • Phenol oxidase (copper) • Pyruvate oxidase (manganese) • Xanthine oxidase (molybdenum) • Cytochrome oxidase (iron and copper)
  • 35. Effect of time • Under ideal and optimal conditions (like pH, temperature etc.), the time required for an enzyme reaction is less. • Variations in the time of the reaction are generally related to the alterations in pH and temperature.
  • 36. Effect of light and radiation • Exposure of enzymes to ultraviolet, beta, gamma & X-rays inactivates certain enzymes due to the formation of peroxides. e.g. UV rays inhibit salivary amylase activity
  • 38. Enzyme inhibitor • Enzyme inhibitor is defined as a substance, which binds with the enzyme and brings about a decrease in catalytic activity of that enzyme. • They are usually specific and they work at low concentrations • They block the enzyme but they do not usually destroy it • Many drugs and poisons are inhibitors of enzymes in the nervous system
  • 39. Type of Enzyme Inhibitors Reversible Irreversible Type of Inhibitors Competitive Uncompetitive Non- Competitive Active Site Directed Suicide / kcat Inhibitors
  • 40. Reversible inhibition • The inhibitor binds non-covalently with enzyme and the enzyme inhibition can be reversed if the inhibitor is removed. • Binding is weak and thus, inhibition is reversible. • Do not cause any permanent changes in the enzyme • Subtypes: • Competitive & Non-competitive Inhibition
  • 41. Competitive inhibition • The inhibitor (I) molecules resembles the real substrate (S) • Also called as substrate analogue inhibition • Binds to active site – forms EI complex. • EI complex cannot rive rise to product formation. • As long as the competitive inhibitor holds the active site, the enzyme is not available for the substrate to bind. • Relative concentrations of S, I determine inhibition. E ES EI E + P No product formation
  • 42. Binding of S & I in different Situations • Classical Competitive Inhibition (S & I compete for the same binding site) Enzyme
  • 43. • Binding of I to a distinct inhibitor site causes a conformational change in the enzyme that distorts or masks the S binding site or vice versa. I S Enzyme I Enzyme S I Enzyme S
  • 44. • A competitive inhibitor diminishes the rate of catalysis by reducing the proportion of enzyme molecules bound to a substrate. • Competitive inhibition can be relieved by increasing the substrate concentration & maximum velocity is regained. • A higher substrate concentration is therefore needed to achieve a halfmaximum rate, Km increases • High concentrations of the substrate displace the inhibitor again. • The V max, not influenced by this type of inhibition.
  • 45. • E. g. Malonate – structural analog of succinate-inhibits succinate dehydrogenase.
  • 46. The effect of enzyme inhibition Succinate Fumarate + 2H++ 2e- Succinate dehydrogenase CH2COOH CHCOOH COOH CH2COOH CHCOOH COOH CH2 Malonate
  • 47. • The compounds malonic acid, glutaric acid and oxalic acid, have structural similarity with succinic acid and compete with the substrate for binding at the active site of SDH. • Antimetabolites: • These chemical compounds that block the metabolic reactions by their inhibitory action on enzymes. • Antimetabolites are usually structural analogues of substrates and thus are competitive inhibitors. • They are in use for cancer therapy, gout etc.
  • 48. Examples of competitive inhibition Enzyme Substrate Competitive inhibitor Succinate Dehydrogenase Succinate Malonate Dihydrofolate Reductase 7,8-dihydrofolate Aminopterin Xanthine Oxidase Hypoxanthine Allopurinol Acetyl cholinesterase Acetylcholine Succinylcholine Lactate Dehydrogenase Lactate Oxamate HMG CoA Reductase HMG Co A HMG
  • 50. In the presence of a competitive inhibitor Km increases V max unchanged No inhibitor + C Inhibitor Vmax ½ Vmax Km Kmapp [s] v
  • 51. Lineweaver Burk plot [I]2 [I]1 1 Kmapp 1 Km • In the presence of a competitive inhibitor Km increases • V max unchanged
  • 52. Non-Competitive Inhibition • The inhibitor binds at a site other than the active site on the enzyme & causes conformational changes on enzymes or some times it may react with functional group at the active site & inactivates the enzyme. • This binding impairs the enzyme function. • Inhibitor has no structural resemblance with the substrate. • There is no competition for the active site of the enzyme molecule.
  • 53. • There usually exists a strong affinity for the inhibitor to bind at the second site. • The inhibitor does not interfere with the enzyme-substrate binding. • But the catalysis is prevented, possibly due to a distortion in the enzyme conformation • The inhibitor generally binds with the enzyme as well as the ES complex. • Km value is unchanged & V max is lowered.
  • 54. • Heavy metal ions (Ag+, Pb2+, Hg2+ etc.) can non-competitively inhibit the enzymes by binding with cysteinyl sulfhydryl groups & inactivates the enzymes. • Heavy metals also form covalent bonds with carboxyl groups & histidine, results in irreversible inhibition. • Non-competitive inhibition is also called as enzyme poisons E + S ES + I EI + S E + P + I EIS
  • 55. Non-Competitive Inhibition Enzyme Enzyme Enzyme Enzyme S I S I
  • 56. Non-Competitive Inhibition No inhibitor + NC Inhibitor Vmax Vmax i ½ Vmax Km [s] v ½ Vmax i Vmax = Decreases. Km = Unchanged
  • 57. Lineweaver – Burk Plot [I]2 [I]1 No Inhibitor 1 Vmax 1 Vmaxi 1 Km 1/[s] 1/v • Km value is unchanged • V max is lowered
  • 58. Comparison between competitive & Non-competitive inhibition Competitive Inhibition Non-competitive Inhibition Acting on Active site May or may not Structure of inhibitor Substrate analogue Unrelated molecule Inhibition is Reversible Generally Irreversible Excess Substrate Inhibition Relieved No effect Km Increased No Change V max No Change Decreased Significance Drug Action Toxicological
  • 59. Uncompetitive Inhibition • Here inhibitor does not have any affinity for the active site of enzyme. • Inhibitor binds only with enzyme-substrate complex; but not with free enzyme. • Both V max and Km are decreased
  • 60. • UC Inhibition is rare in single-substrate reactions. • E.g. Phenylalanine inhibits alkaline phosphatase in intestinal cells • It is common in multi-substrate reactions E + S E S E + P + I ESI
  • 61. Uncompetitive Inhibition Enzyme Enzyme S I Enzyme S
  • 62. Uncompetitive Inhibition No inhibitor + UC Inhibitor Vmax Vmax i ½ Vmax Km [s] ½ Vmax i Vmax = Decreases Km = Decreases Kmapp v
  • 63. Irreversible inhibition • In this type, Inhibitor binds at or near the active site of the enzyme irreversibly, usually by covalent bonds, so that it can’t subsequently dissociate from the enzyme • The I destroys as essential functional group on the enzyme that participates in normal S binding or catalytic action. • As a result the enzyme is permanently inactive • Compounds which irreversibly denature the enzyme protein or cause non-specific inactivation of the active site are not usually regarded as irreversible inhibitors.
  • 64. Examples • These inhibitors are toxic poisonous substances. • Iodoacetate: • It is an irreversible inhibitor of the enzymes like papain and glyceraldehyde 3- phosphate dehydrogenase • Iodoacetate combines with sulfhydryl (-SH) groups at the active site of these enzymes and makes them inactive. • Diisopropyl fluorophosphafe (DFP) is a nerve gas developed by the Germans during Second World War. • DFP irreversibly binds with enzymes containing serine at the active site, e.g. serine proteases, acetylcholine esterase.
  • 65. Examples • DFP (Diisopropylphosphofluoridate) is a nerve poison. • It inactivates acetylcholinesterase that plays an important role in the transmission of nerve impulses. OCH(CH3)2 OCH(CH3)2 E CH2-OH + F—P=O E CH2-O- F—P=O + HF OCH(CH3)2 OCH(CH3)2 DFP Catalytically inactive enzyme
  • 66. • Disulfiram (Antabuse)s a drug used in the treatment of alcoholism. • lt irreversibly inhibits the enzyme aldehyde dehydrogenase. • Alcohol addicts, when treated with disulfiram become sick due to the accumulation of acetaldehyde, leading to alcohol avoidance
  • 67. Suicidal inhibition • This is a special type of irreversible inhibition. • Also called as mechanism based inactivation. • In this case, the original inhibitor (the structural analogue/competitive inhibitor) is converted to a more effective inhibitor with the help of same enzyme that ought to be inhibited. • The formed inhibitor binds irreversibly with the enzyme. • Allopurinol, an inhibitor of xanthine oxidase, gets converted to alloxanthine, a more effective inhibitor of this enzyme.
  • 68. Suicidal inhibition • A suicide inhibitor is a relatively inert molecule that is transformed by an enzyme at its active site into a reactive compound that irreversibly inactivates the enzyme • They are substrate analogs designed so that via normal catalytic action of the enzyme, a very reactive group is generated. • The latter forms a covalent bond with a nearby functional group within the active site of the enzyme causing irreversible inhibition. • Such inhibitors are called suicide inhibitors because the enzyme appears to commit suicide. • e.g. FdUMP is a suicide inhibitor of thymidylate synthase.
  • 69. • The use of certain purine and pyrimidine analogues in cancer therapy is also explained on the basis suicide inhibition. • 5-fluorouracil gets converted to fluorodeoxyuridylate which inhibits the enzyme thymidylate synthase, and thus nucleotides synthesis
  • 70. During thymidylate synthesis, N5,N10- methyleneTHF is converted to 7,8-dihydrofolate; methyleneTHF is regenerated in two steps
  • 71. Allosteric regulation • The catalytic activity of certain regulatory enzymes is modified by certain low molecular weight substances or molecules known as allosteric effectors. • Allosteric enzyme has one catalytic site where the substrate binds and another separate allosteric site where the modifier binds (allo = other) • Allosteric and substrate binding sites may or may not be physically adjacent. • The binding of the regulatory molecule can either enhance the activity of the enzyme (allosteric activation), or inhibit the activity of the enzyme (allosteric inhibition).
  • 72. • The binding of substrate to one of the subunits of the enzyme may enhance substrate binding by other subunits. • This effect is said to be positive co-operativity • If the binding of substrate to one of the subunits decreases the activity of substrate binding by other sites, the effect is called negative co-operativity. • In most cases, a combination is observed, resulting in a sigmoid shaped curve
  • 73. The switch: Allosteric inhibition Allosteric means “other site” E Active site Allosteric site
  • 74. Switching off • These enzymes have two receptor sites • One site fits the substrate like other enzymes • The other site fits an inhibitor molecule Inhibitor fits into allosteric site Substrate cannot fit into the active site Inhibitor molecule
  • 76. Salient Features, Allosteric Inhibition • The inhibitor is not a substrate analogue • It is partially reversible, when excess substrate is added. • Km is usually increased & V max is reduced. • The effect of allosteric modifier is maximum at or near substrate concentration equivalent to Km.
  • 77. • When an inhibitor binds to the allosteric site, the configuration of catalytic site is modified such that substrate cannot bind properly. • Most allosteric enzymes possess quaternary structure. • They are made up of subunits, e.g. Aspartate transcarbamoylase has 6 subunits and pyruvate kinase has 4 subunits
  • 78. Allosteric enzymes Enzyme Allosteric Inhibitor Allosteric Activator ALA synthase Heme Aspartate transcarbamoylase CTP ATP HMGCoA-reductase Cholesterol Phosphofructokinase ATP, citrate AMP, F-2,6-P Pyruvate carboxylase ADP AcetylCoA Acetyl CoA carboxylase AcylCoA Citrate Citrate synthase ATP Carbamoyl phosphate synthetase I NAG Carbamoyl phosphate synthetase II UTP
  • 79. Importance of Enzyme Inhibition • For understanding the regulation of enzyme activity within the living cells • To elucidate the kinetic mechanism of an enzyme catalyzing a multi-substrate reaction • Useful in elucidating the cellular metabolic pathways by causing accumulation of intermediates • Identification of the catalytic groups at the active site • Provide information about substrate specificity of the enzyme
  • 80. Regulation of enzyme activity • Allosteric regulation • Activation of latent enzymes • Compartmentation of metabolic pathways • Control of enzyme synthesis • Enzyme degradation • lsoenzymes
  • 81. Allosteric Regulation or Allosteric Inhibition • Enzymes possess additional sites, known as allosteric sites besides the active site. • Such enzymes are known as allosteric enzymes. • The allosteric sites are unique places on the enzyme molecule • Allosteric effectors: • The catalytic activity of certain regulatory enzymes is modified by certain low molecular weight substances or molecules known as allosteric effectors or modifiers bind at the allosteric site and regulate the enzyme activity.
  • 82. • The allosteric effectors may be positive or negative effectors • The enzyme activity is increased when a positive (+) allosteric effector binds at the allosteric site known as activator site. • A negative (-) allosteric effector binds at the allosteric site called inhibitor site and inhibits the enzyme activity. • Classes of allosteric enzyme: • They are divided into two classes based on the influence of allosteric effector on Km and V max
  • 83. • K-class of allosteric enzymes: • The allosteric inhibitor increases the Km and not the V max. • Double reciprocal plots, similar to competitive inhibition are obtained e.g. phosphofructokinase. • V-class of allosteric enzymes: • The allosteric inhibitor decreases the V max and not the Km. • Double reciprocal plots resemble that of non-competitive inhibition e.g. acetyl CoA carboxylase
  • 84. Feedback regulation • The process of inhibiting the first step by the final product, in a series of enzyme catalysed reactions of a metabolic pathway is referred to as feedback regulation. • The very first step (A to B) by the enzyme is the most effective for regulating the pathway, by the final end product D. • This type of control is often called negative feedback regulation A B C D
  • 85. Feedback regulation Carbamoyl phosphate + Aspartate Aspartate transcarbamylase Carbamoyl Aspartate + Pi Cytidine triphosphate (CTP) Feedback control
  • 86. Activation of latent enzymes • Some enzymes are synthesized as Proenzymes or zymogens which undergo irreversible covalent activation by the breakdown of one or more peptide bonds • Chymotrypsinogen pepsinogen and plasminogen, are respectively- converted to the active enzymes chymotrypsin, pepsin and plasmin. • Certain enzymes exist in the active and inactive forms which are interconvertible • The inter-conversion is brought about by the reversible covalent modifications, namely phosphorylation and dephosphorylation, and oxidation and reduction of disulfide bonds
  • 87. Examples • There are some enzymes which are active in dephosphorylated state and become inactive when phosphorylated e.g. glycogen synthase, acetyl CoA carboxylase. • A few enzymes are active only with sulfhydryl (-SH) groups • E.g. succinate dehydrogenase, urease. • Glutathione bring about the stability of these enzymes.
  • 88. Compartmentation • Generally, the synthetic (anabolic) and breakdown (catabolic) pathways are operative in different cellular organelle. • E.g. Enzymes for fatty acid synthesis are found in the cytosol whereas enzymes for fatty acid oxidation are present in the mitochondria
  • 89. Control of enzyme synthesis • Most of the enzymes, the rate limiting ones, are present in very low concentration. • Many rate limiting enzymes have short half-lives • This helps in the efficient regulation of the enzyme levels. • Constitutive enzymes (house-keeping enzymes)-The levels of which are not controlled and remain fairly constant. • Adaptive enzymes-Their concentrations increase or decrease as per body needs and are well-regulated. • The synthesis of enzymes (proteins) is regulated by the genes.
  • 90. Induction and repression • Induction is used to represent increased synthesis of enzyme while repression indicates its decreased synthesis. • Induction or repression which ultimately determines the enzyme concentration at the gene level through the mediation of hormones or other substance. • E.g of Induction: The hormone insulin induces the synthesis of glycogen synthetase, glucokinase, phosphofructokinase and pyruvate kinase. • All these enzymes are involved in the utilization of glucose. • The hormone cortisol induces the synthesis of many enzymes e.g. pyruvate carboxylase, tryptophan oxygenase and tyrosine aminotransferase
  • 91. • Examples of repression: • In many instances, substrate can repress the synthesis of enzyme. • Pyruvate carboxylase is a key enzyme in the synthesis of glucose from non-carbohydrate sources like pyruvate and amino acids. • lf there is sufficient glucose available, there is no necessity for its synthesis. • This is achieved through repression of pyruvate carboxylase by glucose.
  • 92. Enzyme degradation • Every enzyme has half-life. • It is in days while for others in hours or in minutes, • e.g. LDH4 - 5 to 6 days; • LDH1 - 8 to 12 hours; • Amylase -3 to 5 hours • The key and regulatory enzymes are most rapidly degraded. • lf not needed, they immediately disappear and, when required, they are
  • 93. Units of enzyme activity • Katal: • One kat denotes the conversion of one mole substrate per second (mol/sec). • Activity may also be expressed as millikatals (mkat), microkatals (μkat) • International Units (lU): • One Sl unit or International Unit (lU) is defined as the amount of enzyme activity that catalyses the conversion of one micromol of substrate per minute. • Sl units and katal are interconvertible
  • 94. Non-protein enzymes • Ribozymes are a group of ribonucleic acids that function as biological catalysts, and they are regarded as non-protein enzymes. • RNA molecules are known to adapt a tertiary structure just as in the case of proteins • The specific conformation of RNA may be responsible for its function as biocatalyst.