Poster for NIH Big Data to Knowledge (BD2K) meeting, which funds this work. We have created a series of modules for biomedical big data science.

1. § How
to
scope
generic
curricula
for
different
levels
of
users
Open Educational Resources for Big Data Science
Acknowledgements
This
work
is
supported
by
NIH
Grants
1R25EB020379-­‐01
and
1R25GM114820-­‐01.
Develop
open
educational
resources
(OERs)
for
use
in
courses,
programs,
workshops,
and
related
activities.
Objectives
William Hersh1, Shannon McWeeney1, Melissa Haendel1,2,
Nicole Vasilevsky1,2, Bjorn Pederson1
1Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR
2Ontology Development Group, Library, Oregon Health & Science University, Portland, OR
Challenges
Beginning
informatics
graduate
students
Advanced
undergraduates
exploring
future
career
paths
into
data
science
Established
professionals
who
need
to
apply
BD2K
concepts
in
their
present
jobs
Established
investigators
and
senior
trainees
July 6-10th, 2015, 9am-5pm
daily
Modules
July 6-10th, 2015, 9am-5pm
daily
Modeled
after
the
successful
Of:ice
of
the
National
Coordinator
for
Health
IT
(ONC)
curriculum
materials.
The
value
of
using
the
ONC
Health
IT
Curriculum
approach
includes
an
open
format
with
both:
§ “Out
of
the
box”
content
§ Source
materials
for
that
content
Approach
http://skynet.ohsu.edu/bd2k
Target
Audience
Scope
Images
Style
Dissemination
How
to
scope
generic
curricula
for
different
levels
of
users
How
to
translate
diverse
teaching
styles
into
general
materials
How
to
incorporate
images
and
other
copyrighted
materials
into
open
resources
How
to
maximize
dissemination
while
protecting
intellectual
property
Detailed
references
Data
exercises
Learning
objectives
Narrated
lectures
and
source
slides
Modules contain:
1
|
Biomedical
Big
Data
Science
2
|
Introduction
to
Big
Data
in
Biology
and
Medicine
3
|
Ethical
Issues
in
Use
of
Big
Data
4
|
Terminology
of
Biomedical,
Clinical,
and
Translational
Research
5
|
Computing
Concepts
for
Big
Data
6
|
Clinical
Data
and
Standards
Related
to
Big
Data
7
|
Basic
Research
Data
Standards
8
|
Public
Health
and
Big
Data
9
|
Team
Science
10
|
Secondary
Use
(Reuse)
of
Clinical
Data
11
|
Publication
and
Peer
Review
12
|
Information
Retrieval
13
|
Version
control
and
identibiers
14
|
Data
annotation
and
curation
15
|
Data
and
tools
landscape
16
|
Ontologies
101
17
|
Data
modeling
18
|
Data
metadata
and
provenance
19
|
Semantic
data
interoperability
20
|
Semantic
Web
data
21
|
Context-­‐based
selection
of
data
22
|
Translating
the
Question
23
|
Implications
of
Provenance
and
Pre-­‐processing
24
|
Data
tells
a
story
25
|
Choice
of
Algorithms
and
Algorithm
Dynamics
26
|
Statistical
Signibicance,
P-­‐hacking
and
Multiple-­‐testing
27
|
Displaying
Conbidence
and
Uncertainty
28
|
Visualization
and
Interpretation
29
|
Replication,
Validation
and
the
spectrum
of
Reproducibility
30
|
Regulatory
Issues
in
Big
Data
for
Genomics
and
Health
31
|
Hosting
data
dissemination
and
data
stewardship
workshops
32
|
Guidelines
for
reporting,
publications,
and
data
sharing
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