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© 2018
Chemistry Matters Inc.
Making chemistry data meaningful
Unscrambling Contaminant Mixtures to Determine
their Chemical Fingerprints and Sources
• Court D Sandau1,2, Lacey Harbicht1, Phil Richards1, Khalid Lemouji2
• 1 Chemistry Matters Inc., Calgary, AB
• 2 Statvis Analytics Inc., Edmonton, AB
© 2018
Chemistry Matters Inc.
Copyright Statement
All rights reserved. No part of this publication may be reproduced,
distributed, or transmitted in any form or by any means, including
photocopying, recording, or other electronic or mechanical methods,
without the prior written permission of Chemistry Matters Inc.
2Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Topics of Presentation
• Environmental forensics and chemical patterns
• What is source apportionment?
• What is Positive Matrix Factorization?
• Case Study – Natural vs. Oil Spill PAHs
Envirotech 2018 - Calgary, Alberta 3
© 2018
Chemistry Matters Inc.
Progression of Environmental Forensics
4Envirotech 2018 - Calgary, Alberta
Background Sample 1
PCA HCA
Individual Sample
Pattern Analysis
Double Ratio Plots / Diagnostic Ratios
Chromatogram
Analysis
Next Step:
Source
Apportionment
0.00%
10.0%
50%
35%
2.5% 3.0%
2014_OctNov_AMS09
Source_1 Source_2 Source_3 Oil Sands Source_5 Forest Fire
Sample A
© 2018
Chemistry Matters Inc.
Chemical Patterns Are Everywhere
5Envirotech 2018 - Calgary, Alberta
0	
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209	
Percent	(%)	
Aroclor	1248:	G3.5	
0	
2	
4	
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16	
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Percent	(%)	
Aroclor	1254:	A4	
0
-4
-8
-120.0%
2.0%
4.0%
6.0%
8.0%
10.0%
12.0%
12 13 14
15
16
17
18
19
20
21
-Z number
Carbon number
Naphthenic Acids in Weathered Oil
0
-2
-4
-6
-8
-10
-12
PCBs
PAHs
Naphthenic Acids
© 2018
Chemistry Matters Inc.
Chemical Fingerprints
6Envirotech 2018 - Calgary, Alberta
Esso
Shell
© 2018
Chemistry Matters Inc.
Chemical Patterns
• All contamination has a potential chemical signature
• If the chemical signature is unique to the contamination, then it will
be the fingerprint of the contamination
• There are environmental weathering processes that can alter a
fingerprint over time that must be considered
– BUT - weathering is predictable and is determined by the physical-chemical
properties of the compounds
• Like chemicals – move together in the environment
Envirotech 2018 - Calgary, Alberta 7
© 2018
Chemistry Matters Inc.
Source Apportionment
• Determining the proportion of the source(s) of
the contamination in a sample and at a
contaminated site
• Also known as receptor modelling
8Envirotech 2018 - Calgary, Alberta
0.00%
10.0%
50%
35%
2.5% 3.0%
2014_OctNov_AMS09
Source_1 Source_2 Source_3 Oil Sands Source_5 Forest Fire
Sample A
Source of PAHs Based on Toxicity
© 2018
Chemistry Matters Inc.
Where can source apportionment be used?
• Air pollution – PAHs, metals on particulate matter, VOCs
• Mixing condensate and gasoline plumes
• Contaminated sites with multiple sources
– Superfund sites – PCBs, PAHs, Dioxins/Furans
• Crude oil spills in rivers and ocean
9Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Positive Matrix Factorization (PMF)
• Developed by Paatero (UofHelsinki) for air pollution
• Multivariate technique decomposes a matrix of
analytical results into two matrices:
– factor contributions (how much) and factor profiles
(fingerprint)
• Factor profiles still require interpretation to determine
sources
10Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Keys to Successful PMF
• Consistent analytical data for all sampling points
• End-members (sources) well represented in
sampling points included in PMF analysis
• Models are not definitive, multiple conclusions
11Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Case Study
12Envirotech 2018 - Calgary, Alberta
PAHs in river after an oil spill
© 2018
Chemistry Matters Inc.
Why are PAHs the focus – post oil spill?
• Not very volatile
• Not soluble in water/bind to organic carbon in sediment
• Resist biodegradation
• Potential to bioaccumulate (very minimal)
• Known toxicity (mediated through Ah receptor)
• Percentage (<1-10%) quantities in crude oil
– High enough concentrations to see in environment
13Envirotech 2018 - Calgary, Alberta
toluene
3800 Pa
470 mg/L
2.69
10.4 Pa
naphthalene
31 mg/L
3.37
0.0161 Pa
phenanthrene
1.1 mg/L
4.46
0.0006 Pa
pyrene
0.13 mg/L
8.8
Volatility
Solubility
KOC
© 2018
Chemistry Matters Inc.
Organic carbon drives sediment concentrations
• Once equilibrium is reached, organic
carbon drives PAH concentrations in
sediments
• Equilibrium is reached quite quickly
14
1979 Publication describes
contaminants sorption to organic
carbon
Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
PAHs in Rivers
15
• Rivers are catchment areas, sinks for
sediments, especially reservoirs
• PAHs have long half-lives
• PAHs are ubiquitous
All rivers in Alberta have PAHs
– In sediment
– In organic rich phases
– Most are petrogenic origin
– Above Tier 1 guidelines
http://www.ec.gc.ca/doc/publications/pollution/COM1396/index-eng.htm
0	
0.05	
0.1	
0.15	
0.2	
0.25	
0.3	
0.35	
0.4	
N
aphthalene	
C1	naphthalene	
C2	naphthalene	
C3	naphthalene	
C4	naphthalene	
Fluorene	
C1	fluorene	
C2	fluorene	
C3	fluorene	
Phenanthrene/Anthracene	
C1	phenanthrene/anthracene	
C2	phenanthrene/anth.	
C3	phenanthrene/anth.	
C4	phenanthrene/anth.	
D
ibenzothiophene	
C1	dibenzothiophene	
C2	dibenzothiophene	
C3	dibenzothiophene	
C4	dibenzothiophene	
Fluoranthene/Pyrene	
C1	fluoranthene/pyrene	
C2	fluoranthene/pyrene	
C3	fluoranthene/pyrene	
C4	fluoranthene/pyrene	
Benz(a)anthracene/Chrysene	
C1	B(a)A/chrysene	
C2	B(a)A/chrysene	
C3	B(a)A/chrysene	
C4	B(a)A/chrysene	
CTRL	S/C-1	
Background PAH Pattern
Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
PAHs on Sediments
• Lots of PAHs in sediments
16Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
What has more PAHs?
Oil Spill or Yearly Sediment Load?
• Back of the envelope calculation: is a rough calculation, typically
jotted down on any available scrap of paper such as an envelope.
It is more than a guess but less than an accurate calculation or
mathematical proof. (Wikipedia)
17Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc. 18Envirotech 2018 - Calgary, Alberta
• Oil spill of 225 m3 which is ~198,000kg
• ∑PAH16 measured concentration of
165 mg/kg
• ∑PAH16 released: 33 kg
• Sediment in large river over 1 year
(mostly during freshet) is 3,000,000
tons
• Average ∑PAH16 measured in
upstream locations was 0.211 mg/kg
• ∑PAH16 in river sediment flowing by
breakpoint each year is 6,330 kg• Oil spill contributes less
than 1% to the yearly
PAHs passing by
breakpoint
Back of the Envelope Calculation
Source apportion that!
© 2018
Chemistry Matters Inc.
Setting Up Data for PMF
• CSV files with sample IDs and GPS locations
• CSV file with sample IDs, compound concentrations
• Compound data needs imputations for missing values
– Zero to maximum for missing values
– Kaplan-Meyer substitution for NDs
• Data normalization completed in PMF
19Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Geospatial Analysis
and Selection
• Selection tool for selecting
specific data points to look
at
20Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Correlation/Heatmap Analysis
• Heatmap shows what compounds are related
21Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Principal Component Analysis
• Explore the samples driving variability of your dataset
22Envirotech 2018 - Calgary, Alberta
Oil Related Samples
Upstream of POE
Background Signal
© 2018
Chemistry Matters Inc.
PMF
23Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
PMF - Sources
• Identified two background sources and the spilled oil
24Envirotech 2018 - Calgary, Alberta
Petrogenic Background
Petrogenic Background
Source Oil
© 2018
Chemistry Matters Inc.
PMF Results
25Envirotech 2018 - Calgary, Alberta
PCA Page
PMF Page
No Source Oil. Good!
Upstream of POE
© 2018
Chemistry Matters Inc.
PMF Results
26Envirotech 2018 - Calgary, Alberta
65% of PAHs from
Source Oil
Indicator DBTs of
Source Oil
© 2018
Chemistry Matters Inc.
Conclusions
• Provides client (and stakeholders)
confidence in where oil was found
• Allows client to focus on those areas in
follow up cleanup and monitoring
• Clarity in source of PAHs in the samples
as well as provides perspective on the
risk associated with PAHs from the spill
27Envirotech 2018 - Calgary, Alberta
© 2018
Chemistry Matters Inc.
Thank you for your attention
Contact Info:
Chemistry Matters Inc.
Court Sandau
Cell: 403.669.8566
Email: csandau@chemistry-matters.com
www.chemistry-matters.com
Visit my website and sign up for email for
automatic receipt of my blogs.
Envirotech 2018 - Calgary, Alberta 28

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Unscrambling Contaminant Mixtures to Determine their Chemical Fingerprints

  • 1. © 2018 Chemistry Matters Inc. Making chemistry data meaningful Unscrambling Contaminant Mixtures to Determine their Chemical Fingerprints and Sources • Court D Sandau1,2, Lacey Harbicht1, Phil Richards1, Khalid Lemouji2 • 1 Chemistry Matters Inc., Calgary, AB • 2 Statvis Analytics Inc., Edmonton, AB
  • 2. © 2018 Chemistry Matters Inc. Copyright Statement All rights reserved. No part of this publication may be reproduced, distributed, or transmitted in any form or by any means, including photocopying, recording, or other electronic or mechanical methods, without the prior written permission of Chemistry Matters Inc. 2Envirotech 2018 - Calgary, Alberta
  • 3. © 2018 Chemistry Matters Inc. Topics of Presentation • Environmental forensics and chemical patterns • What is source apportionment? • What is Positive Matrix Factorization? • Case Study – Natural vs. Oil Spill PAHs Envirotech 2018 - Calgary, Alberta 3
  • 4. © 2018 Chemistry Matters Inc. Progression of Environmental Forensics 4Envirotech 2018 - Calgary, Alberta Background Sample 1 PCA HCA Individual Sample Pattern Analysis Double Ratio Plots / Diagnostic Ratios Chromatogram Analysis Next Step: Source Apportionment 0.00% 10.0% 50% 35% 2.5% 3.0% 2014_OctNov_AMS09 Source_1 Source_2 Source_3 Oil Sands Source_5 Forest Fire Sample A
  • 5. © 2018 Chemistry Matters Inc. Chemical Patterns Are Everywhere 5Envirotech 2018 - Calgary, Alberta 0 1 2 3 4 5 6 7 8 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146. 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 Percent (%) Aroclor 1248: G3.5 0 2 4 6 8 10 12 14 16 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146. 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 Percent (%) Aroclor 1254: A4 0 -4 -8 -120.0% 2.0% 4.0% 6.0% 8.0% 10.0% 12.0% 12 13 14 15 16 17 18 19 20 21 -Z number Carbon number Naphthenic Acids in Weathered Oil 0 -2 -4 -6 -8 -10 -12 PCBs PAHs Naphthenic Acids
  • 6. © 2018 Chemistry Matters Inc. Chemical Fingerprints 6Envirotech 2018 - Calgary, Alberta Esso Shell
  • 7. © 2018 Chemistry Matters Inc. Chemical Patterns • All contamination has a potential chemical signature • If the chemical signature is unique to the contamination, then it will be the fingerprint of the contamination • There are environmental weathering processes that can alter a fingerprint over time that must be considered – BUT - weathering is predictable and is determined by the physical-chemical properties of the compounds • Like chemicals – move together in the environment Envirotech 2018 - Calgary, Alberta 7
  • 8. © 2018 Chemistry Matters Inc. Source Apportionment • Determining the proportion of the source(s) of the contamination in a sample and at a contaminated site • Also known as receptor modelling 8Envirotech 2018 - Calgary, Alberta 0.00% 10.0% 50% 35% 2.5% 3.0% 2014_OctNov_AMS09 Source_1 Source_2 Source_3 Oil Sands Source_5 Forest Fire Sample A Source of PAHs Based on Toxicity
  • 9. © 2018 Chemistry Matters Inc. Where can source apportionment be used? • Air pollution – PAHs, metals on particulate matter, VOCs • Mixing condensate and gasoline plumes • Contaminated sites with multiple sources – Superfund sites – PCBs, PAHs, Dioxins/Furans • Crude oil spills in rivers and ocean 9Envirotech 2018 - Calgary, Alberta
  • 10. © 2018 Chemistry Matters Inc. Positive Matrix Factorization (PMF) • Developed by Paatero (UofHelsinki) for air pollution • Multivariate technique decomposes a matrix of analytical results into two matrices: – factor contributions (how much) and factor profiles (fingerprint) • Factor profiles still require interpretation to determine sources 10Envirotech 2018 - Calgary, Alberta
  • 11. © 2018 Chemistry Matters Inc. Keys to Successful PMF • Consistent analytical data for all sampling points • End-members (sources) well represented in sampling points included in PMF analysis • Models are not definitive, multiple conclusions 11Envirotech 2018 - Calgary, Alberta
  • 12. © 2018 Chemistry Matters Inc. Case Study 12Envirotech 2018 - Calgary, Alberta PAHs in river after an oil spill
  • 13. © 2018 Chemistry Matters Inc. Why are PAHs the focus – post oil spill? • Not very volatile • Not soluble in water/bind to organic carbon in sediment • Resist biodegradation • Potential to bioaccumulate (very minimal) • Known toxicity (mediated through Ah receptor) • Percentage (<1-10%) quantities in crude oil – High enough concentrations to see in environment 13Envirotech 2018 - Calgary, Alberta toluene 3800 Pa 470 mg/L 2.69 10.4 Pa naphthalene 31 mg/L 3.37 0.0161 Pa phenanthrene 1.1 mg/L 4.46 0.0006 Pa pyrene 0.13 mg/L 8.8 Volatility Solubility KOC
  • 14. © 2018 Chemistry Matters Inc. Organic carbon drives sediment concentrations • Once equilibrium is reached, organic carbon drives PAH concentrations in sediments • Equilibrium is reached quite quickly 14 1979 Publication describes contaminants sorption to organic carbon Envirotech 2018 - Calgary, Alberta
  • 15. © 2018 Chemistry Matters Inc. PAHs in Rivers 15 • Rivers are catchment areas, sinks for sediments, especially reservoirs • PAHs have long half-lives • PAHs are ubiquitous All rivers in Alberta have PAHs – In sediment – In organic rich phases – Most are petrogenic origin – Above Tier 1 guidelines http://www.ec.gc.ca/doc/publications/pollution/COM1396/index-eng.htm 0 0.05 0.1 0.15 0.2 0.25 0.3 0.35 0.4 N aphthalene C1 naphthalene C2 naphthalene C3 naphthalene C4 naphthalene Fluorene C1 fluorene C2 fluorene C3 fluorene Phenanthrene/Anthracene C1 phenanthrene/anthracene C2 phenanthrene/anth. C3 phenanthrene/anth. C4 phenanthrene/anth. D ibenzothiophene C1 dibenzothiophene C2 dibenzothiophene C3 dibenzothiophene C4 dibenzothiophene Fluoranthene/Pyrene C1 fluoranthene/pyrene C2 fluoranthene/pyrene C3 fluoranthene/pyrene C4 fluoranthene/pyrene Benz(a)anthracene/Chrysene C1 B(a)A/chrysene C2 B(a)A/chrysene C3 B(a)A/chrysene C4 B(a)A/chrysene CTRL S/C-1 Background PAH Pattern Envirotech 2018 - Calgary, Alberta
  • 16. © 2018 Chemistry Matters Inc. PAHs on Sediments • Lots of PAHs in sediments 16Envirotech 2018 - Calgary, Alberta
  • 17. © 2018 Chemistry Matters Inc. What has more PAHs? Oil Spill or Yearly Sediment Load? • Back of the envelope calculation: is a rough calculation, typically jotted down on any available scrap of paper such as an envelope. It is more than a guess but less than an accurate calculation or mathematical proof. (Wikipedia) 17Envirotech 2018 - Calgary, Alberta
  • 18. © 2018 Chemistry Matters Inc. 18Envirotech 2018 - Calgary, Alberta • Oil spill of 225 m3 which is ~198,000kg • ∑PAH16 measured concentration of 165 mg/kg • ∑PAH16 released: 33 kg • Sediment in large river over 1 year (mostly during freshet) is 3,000,000 tons • Average ∑PAH16 measured in upstream locations was 0.211 mg/kg • ∑PAH16 in river sediment flowing by breakpoint each year is 6,330 kg• Oil spill contributes less than 1% to the yearly PAHs passing by breakpoint Back of the Envelope Calculation Source apportion that!
  • 19. © 2018 Chemistry Matters Inc. Setting Up Data for PMF • CSV files with sample IDs and GPS locations • CSV file with sample IDs, compound concentrations • Compound data needs imputations for missing values – Zero to maximum for missing values – Kaplan-Meyer substitution for NDs • Data normalization completed in PMF 19Envirotech 2018 - Calgary, Alberta
  • 20. © 2018 Chemistry Matters Inc. Geospatial Analysis and Selection • Selection tool for selecting specific data points to look at 20Envirotech 2018 - Calgary, Alberta
  • 21. © 2018 Chemistry Matters Inc. Correlation/Heatmap Analysis • Heatmap shows what compounds are related 21Envirotech 2018 - Calgary, Alberta
  • 22. © 2018 Chemistry Matters Inc. Principal Component Analysis • Explore the samples driving variability of your dataset 22Envirotech 2018 - Calgary, Alberta Oil Related Samples Upstream of POE Background Signal
  • 23. © 2018 Chemistry Matters Inc. PMF 23Envirotech 2018 - Calgary, Alberta
  • 24. © 2018 Chemistry Matters Inc. PMF - Sources • Identified two background sources and the spilled oil 24Envirotech 2018 - Calgary, Alberta Petrogenic Background Petrogenic Background Source Oil
  • 25. © 2018 Chemistry Matters Inc. PMF Results 25Envirotech 2018 - Calgary, Alberta PCA Page PMF Page No Source Oil. Good! Upstream of POE
  • 26. © 2018 Chemistry Matters Inc. PMF Results 26Envirotech 2018 - Calgary, Alberta 65% of PAHs from Source Oil Indicator DBTs of Source Oil
  • 27. © 2018 Chemistry Matters Inc. Conclusions • Provides client (and stakeholders) confidence in where oil was found • Allows client to focus on those areas in follow up cleanup and monitoring • Clarity in source of PAHs in the samples as well as provides perspective on the risk associated with PAHs from the spill 27Envirotech 2018 - Calgary, Alberta
  • 28. © 2018 Chemistry Matters Inc. Thank you for your attention Contact Info: Chemistry Matters Inc. Court Sandau Cell: 403.669.8566 Email: csandau@chemistry-matters.com www.chemistry-matters.com Visit my website and sign up for email for automatic receipt of my blogs. Envirotech 2018 - Calgary, Alberta 28