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DOWN THE RABBIT HOLE:
An academic's thoughts on being in industry

David C. Thompson
www.unhub.com/dcthompson
ONE PILL MAKES YOU LARGER*

                                                                0 40 000 nuclei i ≈10 years!
                                                                0-40,000    l i in 10      !




[*] All slide titles brought to you courtesy of Lewis Carroll
IT WOULD BE SO NICE IF SOMETHING
      MADE SENSE FOR A CHANGE
           Particles in a Box

                                ˆ = ∑ ⎛ − 1 ∇ 2 + v (r )⎞ + ∑ r 1 r
                                           N
                                H        ⎜        ˆext ri ⎟
                                                          ⎠ i < j | ri − rj |
                                              i
                                    i =1 ⎝ 2
                           r ⎧0 : inside confining volume
                     vext ( r ) = ⎨
                     ˆ
                                  ⎩∞ : elsewhere
           With exact solutions we can extract the correlation
           energy
                 The ‘Stupidity Energy’ [1]
                 Important for ‘realistic chemistry’ e.g. bond
                 forming/breaking
           We can evaluate the performance of theoretical
           models [2-4]
                  [ ]

[1] R. P. Feynman, Statistical Mechanics, 1989
[2] D. C. Thompson and A. Alavi, Phys. Rev. B 66, 235118 (2002)
[3] D. C. Thompson and A. Alavi, Phys. Rev. B 69, 201302 (2004)
[4] D. C. Thompson and A. Alavi, J. Chem. Phys. 122, 124107 (2005)
BEGIN AT THE BEGINNING AND GO ON TILL
      YOU COME TO THE END: THEN STOP

           A marked bump in citations in 2009
                        p
           Our work was correct, just not to as many digits!
           For thousands of years mathematicians have enjoyed competing with one
           other to compute ever more digits of the number π Among modern
                                                                 π.
           physicists, a close analogy is computation of the ground state energy of
           the helium atom, begun 75 years ago by E. A. Hylleraas [5]


           This unifying work of Loos and Gill [6] culminates
           in the formulation and proof of the following
           conjecture:
           For the 1S ground state of two electrons confined by a radial potential V(r)
           = Sgn(m)Zm+2rm in D dimension, the high density correlation energy is:
                                                                    γ2
                                               lim EC ( D, m) ~ −        + O(γ 3 )
                                                 Z →∞               8
                                               γ = 1 /( D − 1)
[5] C. Schwartz, Int. J. Mod. Phys. E 15, 877(2006)
[6] P.-F. Loos and P. M. W. Gill, Chem. Phys. Lett. 500, 1 (2010)
A CAT MAY LOOK AT A KING. I'VE READ THAT IN
      SOME BOOK, BUT I DON'T REMEMBER WHERE

                                                                             [7]




                                                R. Pauncz

    P. W. Ayers                                                                          D. Tleugabulova


                                                      I'd go with "many"

                                   R. G. Parr
                                                                                   [8]




[7] R. Pauncz, Acta Physica Academiae Scientarium Hungaricae, 1, 277(1952)
[8] D. C. Thompson, Y. Liu, and P. W. Ayers, Phys. Lett. A 351, 439 (2006)
I DON'T BELIEVE THERE'S AN ATOM OF
      MEANING IN IT

           Integrals p
               g     pervade electronic structure theory
                                                       y
           Optimal cubature schemes exist for the unit
           hypercube [9]
                 Move points to where they are most needed, through
                 a novel ‘molecular’ transformation [10-11]




[9] S. A. Smolyak, Soviet Math. Dokl. 4, 240 (1963)
[10] J. I. Rodríguez, D. C. Thompson, P. W. Ayers, and A. M. Köster, J. Chem. Phys. 128, 224103 (2008)
[11] J. I. Rodríguez, D. C. Thompson, J. S. M. Anderson, J. Thomson and Paul W. Ayers, J. Phys. A: Math. Theor. 41, 365202 (2008)
BUT IT'S NO USE GOING BACK TO YESTERDAY,
BECAUSE I WAS A DIFFERENT PERSON THEN
 Let’s think about what we’re trying to do:

                                 +            = ?


 We use computational techniques to model some part(s) of
 the protein-ligand binding event

 Are such crude models always going to work (~add value)?
    No, but in some cases they have done, and will continue to be useful

 Important to remember, always that what you’re doing is
              remember always,           you re
 fundamentally incorrect


               +             ≠                   +
WE'RE ALL MAD HERE




                Communication                                 Networking                                Broad interests




                     “… I will decide who gets it and who doesn’t. I will be the master of my cheese until the last piece.” [12]
                                                                                                                Jean-Claude Biver


[12] http://econ.st/eGwcK2
OH MY EARS AND WHISKERS, HOW LATE
IT'S GETTING!

 To provide a feeling for my background – how I
    p                g     y      g
 came to this field, and what I brought with me
 Cultural highlight(s):




                         &
Dr. Ali Alavi
Prof. Paul W. Ayers
  Dr. Juan I. Rodríguez
  Dr. James S. M. Anderson

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Down the Rabbit Hole: An academic's thoughts on being in industry

  • 1. DOWN THE RABBIT HOLE: An academic's thoughts on being in industry David C. Thompson www.unhub.com/dcthompson
  • 2. ONE PILL MAKES YOU LARGER* 0 40 000 nuclei i ≈10 years! 0-40,000 l i in 10 ! [*] All slide titles brought to you courtesy of Lewis Carroll
  • 3. IT WOULD BE SO NICE IF SOMETHING MADE SENSE FOR A CHANGE Particles in a Box ˆ = ∑ ⎛ − 1 ∇ 2 + v (r )⎞ + ∑ r 1 r N H ⎜ ˆext ri ⎟ ⎠ i < j | ri − rj | i i =1 ⎝ 2 r ⎧0 : inside confining volume vext ( r ) = ⎨ ˆ ⎩∞ : elsewhere With exact solutions we can extract the correlation energy The ‘Stupidity Energy’ [1] Important for ‘realistic chemistry’ e.g. bond forming/breaking We can evaluate the performance of theoretical models [2-4] [ ] [1] R. P. Feynman, Statistical Mechanics, 1989 [2] D. C. Thompson and A. Alavi, Phys. Rev. B 66, 235118 (2002) [3] D. C. Thompson and A. Alavi, Phys. Rev. B 69, 201302 (2004) [4] D. C. Thompson and A. Alavi, J. Chem. Phys. 122, 124107 (2005)
  • 4. BEGIN AT THE BEGINNING AND GO ON TILL YOU COME TO THE END: THEN STOP A marked bump in citations in 2009 p Our work was correct, just not to as many digits! For thousands of years mathematicians have enjoyed competing with one other to compute ever more digits of the number π Among modern π. physicists, a close analogy is computation of the ground state energy of the helium atom, begun 75 years ago by E. A. Hylleraas [5] This unifying work of Loos and Gill [6] culminates in the formulation and proof of the following conjecture: For the 1S ground state of two electrons confined by a radial potential V(r) = Sgn(m)Zm+2rm in D dimension, the high density correlation energy is: γ2 lim EC ( D, m) ~ − + O(γ 3 ) Z →∞ 8 γ = 1 /( D − 1) [5] C. Schwartz, Int. J. Mod. Phys. E 15, 877(2006) [6] P.-F. Loos and P. M. W. Gill, Chem. Phys. Lett. 500, 1 (2010)
  • 5. A CAT MAY LOOK AT A KING. I'VE READ THAT IN SOME BOOK, BUT I DON'T REMEMBER WHERE [7] R. Pauncz P. W. Ayers D. Tleugabulova I'd go with "many" R. G. Parr [8] [7] R. Pauncz, Acta Physica Academiae Scientarium Hungaricae, 1, 277(1952) [8] D. C. Thompson, Y. Liu, and P. W. Ayers, Phys. Lett. A 351, 439 (2006)
  • 6. I DON'T BELIEVE THERE'S AN ATOM OF MEANING IN IT Integrals p g pervade electronic structure theory y Optimal cubature schemes exist for the unit hypercube [9] Move points to where they are most needed, through a novel ‘molecular’ transformation [10-11] [9] S. A. Smolyak, Soviet Math. Dokl. 4, 240 (1963) [10] J. I. Rodríguez, D. C. Thompson, P. W. Ayers, and A. M. Köster, J. Chem. Phys. 128, 224103 (2008) [11] J. I. Rodríguez, D. C. Thompson, J. S. M. Anderson, J. Thomson and Paul W. Ayers, J. Phys. A: Math. Theor. 41, 365202 (2008)
  • 7. BUT IT'S NO USE GOING BACK TO YESTERDAY, BECAUSE I WAS A DIFFERENT PERSON THEN Let’s think about what we’re trying to do: + = ? We use computational techniques to model some part(s) of the protein-ligand binding event Are such crude models always going to work (~add value)? No, but in some cases they have done, and will continue to be useful Important to remember, always that what you’re doing is remember always, you re fundamentally incorrect + ≠ +
  • 8. WE'RE ALL MAD HERE Communication Networking Broad interests “… I will decide who gets it and who doesn’t. I will be the master of my cheese until the last piece.” [12] Jean-Claude Biver [12] http://econ.st/eGwcK2
  • 9. OH MY EARS AND WHISKERS, HOW LATE IT'S GETTING! To provide a feeling for my background – how I p g y g came to this field, and what I brought with me Cultural highlight(s): &
  • 10. Dr. Ali Alavi Prof. Paul W. Ayers Dr. Juan I. Rodríguez Dr. James S. M. Anderson