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CELL STRUCTURE &
ORGANISATION
CELL THEORY
All organisms consist of cells or the product of cells and
all cells arise from pre-existing cells.
The cell is the unit of structure and function of most
organisms – they are the building blocks of life. They :
- respond to stimuli
- reproduce
- move
- transform energy for perform functions
- produce waste materials
While organisms vary in size and complexity. Large
organisms are multicellular while the smallest are
unicellular.
1665 – Robert Hooke used the first recorded magnifying
device to observe cork cells.
1667 – Leeuwenhoek used a small bead of glass to
examine material from his mouth which he called
“animalcules” or bacteria.
Two main types of microscopes
Electron microscope
Beams of electrons pass through a vacuum and then
through a thin layer of tissue. Electrons have a much
shorter wavelength compared to visible light they provide
much better detail or resolution (ability to separate
objects)
X 100,000 magnification
Light microscope
Relies on light passing through a very thin section of
tissue. Combination of “eye piece” and “objective” lens
X 1500 magnification
Micrometre (μm) unit of length used to measure cells. If
structures are measured within a cell scientists use
nanometre (nm)
Bacteria - 1 μm
Human red blood cell - 10μm
Human liver cell - 50μm
Plant mesophyll cell - 100μm
Viruses – 20-400nm (not considered a cell)
Animal Cell – Light Microscope
Plant Cell – Light Microscope
Animal Cell – Electron Microscope
Plant Cell – Electron Microscope
Some sizes of different cells
Surface Area To Volume Ratio
The SA:V ratio explains the exchange of materials
between external and internal environment.
Cells which are microscopic in size allow the required
substances and waste products to easily diffuse.
As a cell grows in size it will have relatively less
surface area compared to its volume and is
thought to be a stimulus for it to divide
The shape of a cell also affects SA:V ratio. The
human red blood cell is a bi-concave disc which
maximises surface area to volume increasing its
capacity to exchange oxygen and carbon dioxide
as well as allowing for flexibility in the
capillaries.
A Simplified Classification
Living things
Cellular Non-Cellular
Eukaryotes Prokaryotes
Plant Animal Protist Fungi Bacteria Viruses
Prokaryotic cells
Do not have defined nucleus, DNA is found as a
concentrated mass or a small circle of DNA
known as a plasmid
Have existed for millions of years, relatively
unspecialised and do not contain membrane
bound organelles
Eg bacteria
Some prokaryotes have extensively folded
plasma membranes using their large surface
areas for respiration, photosynthesis
(chemosynthesis) and DNA replication. They
contain ribosomes enabling protein synthesis.
They are very small and as such have a very
good SA:V ratio.
Eukaryotic cells
Cells that make up large complex multicellular
organisms are eukaryotic. Highly specialised,
larger in size and contain a membrane bound
nucleus and specialised membrane organelles
General animal cell
General plant cell
Nucleus
Membrane bound and contains chromosomes
which controls activities
of the cell
Mitochondria
Site of aerobic respiration, enables cell to release
energy from organic molecules for cellular
purposes
Photosynthesis
Glucose + Oxygen Carbon Dioxide + Water + Energy
C6 H12 O6 + 6O2 6CO2 + 6H20
Carbon Dioxide + Water Glucose + Oxygen
6CO2 + 6H2O C6 H12 O6 + 6O2
Aerobic Respiration
Chloroplasts
Contain the green pigment chlorophyll which allows for
photosynthesis, converting inorganic materials to organic
molecules using light
Vacuoles
Membrane bound structures filled with fluid
which contains dissolved sugars or salts. In plants
cells contain large vacuoles surrounded by
membrane. They are a storage site for solutes,
cell turgidity and maintaining water balance.
Unicellular cells that live in freshwater have
“contractile” vacuoles which pump out water
which enters via osmosis
Animal cells contain “food vacuoles” that store
food particles acquired by phagocytosis
Endoplasmic Reticulum
Internal folded membranes that connect nucleus with cell
membrane: Two types
1. Smooth ER – no attached ribosomes, involved with
synthesis and metabolism of fluids
2. Rough ER – attached ribosomes, synthesised proteins
are modified by ER.
Golgi Bodies (Apparatus)
Found in all eukaryotic cells, consist of
flattened discs surrounded by spherical vesicles.
Involved in packaging and transporting sugar-
coated proteins (glycoproteins) to the outside of
the cell.
Cell Membrane
The cell membrane is found in all living cells and controls
the entry and exit of materials in out of the cell. It
consists of two layers of phospholipid molecules
embedded with proteins. There have been various models
put forward over the last 100 years to explain its
structure
Fluid Mosaic Model
Fluid
Refers to the ability of proteins and lipids to move
sideways through within the structure, giving it a fluid
nature
Mosaic
Refers to the variety of protein molecules that are
embedded or attached to the phospholipid bi-layer. These
proteins determine the function of the cell membrane
Types of proteins inside Mosaic layer
1. channel type proteins which span the
membrane
Passive – diffusion
Active – active transport
2. receptor type proteins bound to the surface
that are involved in cellular communication
- recognition of antigens and hormones
3. proteins on underside of membrane held in
place by cytoskeleton
Fluid Mosaic model explains the “semi-
permeable” nature of the cell membrane.
The Fluid Mosaic Model
• The phospholipid bi-layer consists of a double layer of
phospholipid molecules.
• The phospholipid molecules have a hydrophilic end
(water loving) and a hydrophobic end (water hating)
Hydrophilic Phosphate
head
Hydrophobic hydrocarbon tail
The Fluid Mosaic Model of a Cell
Membrane
Ref: Biology, Roberts
Cell Membrane Proteins
Ref: Biology for the IB Diploma, Allott
Endocytosis & Exocytosis
Movement of larger molecules such as proteins or
polysaccharides and fluids.
Exocytosis
Substances passing out of cell. Molecules packaged by
Golgi bodies and ER such as hormones, enzymes.
Endocytosis
Substances passing into the cell. Two types
1. Phagocytosis - solid particles “eating”
2. Pinocytosis – liquid particles “cell drinking”
Exocytosis
Endocytosis
Cytoskeleton
Internal framework of microtubules and micro fibres.
Organised by the centrosome or “micro-tubule organising
centre” (MTOC)located near the nucleus.
Three functions
1. Support
Maintains shape of animal cells in absence of cell wall.
Organelles are supported and attached to cytoskeleton in
the cytoplasm
2. Movement
-movement of vesicles in side cell as in exocytosis
-movement of chromosomes during cell division
-movement of cilia and flagella
-contraction and expansion of muscle cells
3. Regulation
Relay of messages from external environment to cells
interior
Prokaryotes vs Eukaryotes
Prokaryotes
• Smaller (1 – 10um)
• Circular DNA
• No Nucleus (nuclear Membrane)
• Little internal organisation
• No membrane-bound organelles
• Single chromosome
• Most have a cell wall (made of
peptidoglycan)
• Some can obtain energy by
photosynthesis
Eukaryotes
• Larger (10 – 100um)
• Linear DNA
• Contains a nucleus
• High level of internal organisation
• Contains membrane bound
organelles
• Two or more chromosomes
• Cell wall (if present) made of
cellulose
• Obtain energy by photosynthesis
or ingesting other living organisms
Cells ensure that the composition of their internal
environment is carefully regulated to ensure that
chemical concentrations are kept relatively stable.
Cells manufacture organic molecules from their
interaction with inorganic molecules (and other organic
molecules)
The cell membrane regulates and controls this exchange
Living cells require a constant supply of energy to carry
out processes.
Inside cells chemical reactions are occurring at all times
and these require a stable internal environment
(Homeostasis)
i.e. concentrations of substrates (O2) and products (urea,
CO2)
Reactions inside cells will also be adversely affected with
changes in pH or temperature
Several characteristics will determine movement across
the membrane
1. Size of the molecule
2. Chemical composition of the molecule. Chemicals
which dissolve are more likely to move easily across
the membrane
3. Shape of the molecule – cell membrane can
discriminate and select specific molecules i.e. glucose
Examples of selective exchange:
CO2 / O2 easily move through cell membrane because of
their small size
Glucose and water do not readily move across, they
require specific protein channels or carrier proteins
Proteins and polysaccharides are too large to cross the
membrane unless they move via endocytosis or
exocytosis.
Movement of molecules across a
cell membrane
Diffusion
The random movement of a
molecules from a region of high
concentration to a region of
low concentration. It is a
passive process which requires
no energy.
Diffusion
Osmosis
Diffusion of water across a semipermeable
membrane from a high concentration to a low
concentration.
Water is a solvent, the materials dissolved in it, is
the solute and the combined mixture is referred
to as the solution
Isotonic – same solute concentration as the cell
Hypotonic- a lower concentration as the cell
Hypertonic – a higher solute concentration as the cell
Osmosis
Osmosis has a more drastic effect on animal cells than
plant cells Why?
Animal cells do not have a cell wall and therefore are
prone to gaining (bursting) or losing water (shrivel),
particularly if they exist in fresh water.
E.g. Protozoa – Euglena (contractile vacuole expels excess
water)
Plant cells are strengthened by the cell wall-rarely
destroyed by osmosis.
Active Transport
In some situations molecules are required to move against
a concentration gradient – this requires energy
Transport proteins in the cell membrane actively move
specific substances across the membrane from a high to
low concentration
ATP provides this energy
Active Transport
Active Transport
Transmission of nerve signals involves
exchange of sodium and potassium ions
by diffusion across the cell membrane.
When fatigued it is necessary to pump
these ions against a concentration
gradient back to the other side
Active Transport
Another example is the absorption of glucose. If the
concentration in the gut is higher than the blood it will
diffuse, but if it is lower, it will only move by active
transport.
Why?
Fish actively absorb ions through their gills to replace
solutes lost in large volumes of their urine
Active Transport
Facilitated Diffusion
This is where some larger molecules which
cannot diffuse through the membrane are
helped through the membrane by special
proteins.
They are facilitated through.
Substances like:
• Glucose
• Amino acids
Facilitated diffusion is still passive (substances
move along a concentration gradient from high
to lower concentrations)
Facilitated Diffusion

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Cell structure & organisation

  • 2. CELL THEORY All organisms consist of cells or the product of cells and all cells arise from pre-existing cells. The cell is the unit of structure and function of most organisms – they are the building blocks of life. They : - respond to stimuli - reproduce - move - transform energy for perform functions - produce waste materials
  • 3. While organisms vary in size and complexity. Large organisms are multicellular while the smallest are unicellular. 1665 – Robert Hooke used the first recorded magnifying device to observe cork cells. 1667 – Leeuwenhoek used a small bead of glass to examine material from his mouth which he called “animalcules” or bacteria.
  • 4. Two main types of microscopes Electron microscope Beams of electrons pass through a vacuum and then through a thin layer of tissue. Electrons have a much shorter wavelength compared to visible light they provide much better detail or resolution (ability to separate objects) X 100,000 magnification
  • 5. Light microscope Relies on light passing through a very thin section of tissue. Combination of “eye piece” and “objective” lens X 1500 magnification Micrometre (μm) unit of length used to measure cells. If structures are measured within a cell scientists use nanometre (nm) Bacteria - 1 μm Human red blood cell - 10μm Human liver cell - 50μm Plant mesophyll cell - 100μm Viruses – 20-400nm (not considered a cell)
  • 6. Animal Cell – Light Microscope
  • 7. Plant Cell – Light Microscope
  • 8. Animal Cell – Electron Microscope
  • 9. Plant Cell – Electron Microscope
  • 10. Some sizes of different cells
  • 11. Surface Area To Volume Ratio The SA:V ratio explains the exchange of materials between external and internal environment. Cells which are microscopic in size allow the required substances and waste products to easily diffuse.
  • 12. As a cell grows in size it will have relatively less surface area compared to its volume and is thought to be a stimulus for it to divide
  • 13. The shape of a cell also affects SA:V ratio. The human red blood cell is a bi-concave disc which maximises surface area to volume increasing its capacity to exchange oxygen and carbon dioxide as well as allowing for flexibility in the capillaries.
  • 14. A Simplified Classification Living things Cellular Non-Cellular Eukaryotes Prokaryotes Plant Animal Protist Fungi Bacteria Viruses
  • 15. Prokaryotic cells Do not have defined nucleus, DNA is found as a concentrated mass or a small circle of DNA known as a plasmid Have existed for millions of years, relatively unspecialised and do not contain membrane bound organelles Eg bacteria
  • 16. Some prokaryotes have extensively folded plasma membranes using their large surface areas for respiration, photosynthesis (chemosynthesis) and DNA replication. They contain ribosomes enabling protein synthesis. They are very small and as such have a very good SA:V ratio.
  • 17. Eukaryotic cells Cells that make up large complex multicellular organisms are eukaryotic. Highly specialised, larger in size and contain a membrane bound nucleus and specialised membrane organelles
  • 20. Nucleus Membrane bound and contains chromosomes which controls activities of the cell Mitochondria Site of aerobic respiration, enables cell to release energy from organic molecules for cellular purposes
  • 21. Photosynthesis Glucose + Oxygen Carbon Dioxide + Water + Energy C6 H12 O6 + 6O2 6CO2 + 6H20 Carbon Dioxide + Water Glucose + Oxygen 6CO2 + 6H2O C6 H12 O6 + 6O2 Aerobic Respiration
  • 22. Chloroplasts Contain the green pigment chlorophyll which allows for photosynthesis, converting inorganic materials to organic molecules using light
  • 23. Vacuoles Membrane bound structures filled with fluid which contains dissolved sugars or salts. In plants cells contain large vacuoles surrounded by membrane. They are a storage site for solutes, cell turgidity and maintaining water balance. Unicellular cells that live in freshwater have “contractile” vacuoles which pump out water which enters via osmosis Animal cells contain “food vacuoles” that store food particles acquired by phagocytosis
  • 24. Endoplasmic Reticulum Internal folded membranes that connect nucleus with cell membrane: Two types 1. Smooth ER – no attached ribosomes, involved with synthesis and metabolism of fluids 2. Rough ER – attached ribosomes, synthesised proteins are modified by ER.
  • 25. Golgi Bodies (Apparatus) Found in all eukaryotic cells, consist of flattened discs surrounded by spherical vesicles. Involved in packaging and transporting sugar- coated proteins (glycoproteins) to the outside of the cell.
  • 26.
  • 27. Cell Membrane The cell membrane is found in all living cells and controls the entry and exit of materials in out of the cell. It consists of two layers of phospholipid molecules embedded with proteins. There have been various models put forward over the last 100 years to explain its structure
  • 28. Fluid Mosaic Model Fluid Refers to the ability of proteins and lipids to move sideways through within the structure, giving it a fluid nature Mosaic Refers to the variety of protein molecules that are embedded or attached to the phospholipid bi-layer. These proteins determine the function of the cell membrane
  • 29. Types of proteins inside Mosaic layer 1. channel type proteins which span the membrane Passive – diffusion Active – active transport 2. receptor type proteins bound to the surface that are involved in cellular communication - recognition of antigens and hormones 3. proteins on underside of membrane held in place by cytoskeleton
  • 30. Fluid Mosaic model explains the “semi- permeable” nature of the cell membrane.
  • 31. The Fluid Mosaic Model • The phospholipid bi-layer consists of a double layer of phospholipid molecules. • The phospholipid molecules have a hydrophilic end (water loving) and a hydrophobic end (water hating) Hydrophilic Phosphate head Hydrophobic hydrocarbon tail
  • 32. The Fluid Mosaic Model of a Cell Membrane Ref: Biology, Roberts
  • 33. Cell Membrane Proteins Ref: Biology for the IB Diploma, Allott
  • 34. Endocytosis & Exocytosis Movement of larger molecules such as proteins or polysaccharides and fluids. Exocytosis Substances passing out of cell. Molecules packaged by Golgi bodies and ER such as hormones, enzymes. Endocytosis Substances passing into the cell. Two types 1. Phagocytosis - solid particles “eating” 2. Pinocytosis – liquid particles “cell drinking”
  • 36. Cytoskeleton Internal framework of microtubules and micro fibres. Organised by the centrosome or “micro-tubule organising centre” (MTOC)located near the nucleus. Three functions 1. Support Maintains shape of animal cells in absence of cell wall. Organelles are supported and attached to cytoskeleton in the cytoplasm
  • 37. 2. Movement -movement of vesicles in side cell as in exocytosis -movement of chromosomes during cell division -movement of cilia and flagella -contraction and expansion of muscle cells 3. Regulation Relay of messages from external environment to cells interior
  • 38.
  • 39. Prokaryotes vs Eukaryotes Prokaryotes • Smaller (1 – 10um) • Circular DNA • No Nucleus (nuclear Membrane) • Little internal organisation • No membrane-bound organelles • Single chromosome • Most have a cell wall (made of peptidoglycan) • Some can obtain energy by photosynthesis Eukaryotes • Larger (10 – 100um) • Linear DNA • Contains a nucleus • High level of internal organisation • Contains membrane bound organelles • Two or more chromosomes • Cell wall (if present) made of cellulose • Obtain energy by photosynthesis or ingesting other living organisms
  • 40. Cells ensure that the composition of their internal environment is carefully regulated to ensure that chemical concentrations are kept relatively stable. Cells manufacture organic molecules from their interaction with inorganic molecules (and other organic molecules) The cell membrane regulates and controls this exchange
  • 41.
  • 42. Living cells require a constant supply of energy to carry out processes. Inside cells chemical reactions are occurring at all times and these require a stable internal environment (Homeostasis) i.e. concentrations of substrates (O2) and products (urea, CO2) Reactions inside cells will also be adversely affected with changes in pH or temperature
  • 43. Several characteristics will determine movement across the membrane 1. Size of the molecule 2. Chemical composition of the molecule. Chemicals which dissolve are more likely to move easily across the membrane 3. Shape of the molecule – cell membrane can discriminate and select specific molecules i.e. glucose
  • 44. Examples of selective exchange: CO2 / O2 easily move through cell membrane because of their small size Glucose and water do not readily move across, they require specific protein channels or carrier proteins Proteins and polysaccharides are too large to cross the membrane unless they move via endocytosis or exocytosis.
  • 45. Movement of molecules across a cell membrane
  • 46. Diffusion The random movement of a molecules from a region of high concentration to a region of low concentration. It is a passive process which requires no energy.
  • 48. Osmosis Diffusion of water across a semipermeable membrane from a high concentration to a low concentration. Water is a solvent, the materials dissolved in it, is the solute and the combined mixture is referred to as the solution
  • 49. Isotonic – same solute concentration as the cell Hypotonic- a lower concentration as the cell Hypertonic – a higher solute concentration as the cell
  • 51. Osmosis has a more drastic effect on animal cells than plant cells Why? Animal cells do not have a cell wall and therefore are prone to gaining (bursting) or losing water (shrivel), particularly if they exist in fresh water. E.g. Protozoa – Euglena (contractile vacuole expels excess water) Plant cells are strengthened by the cell wall-rarely destroyed by osmosis.
  • 52. Active Transport In some situations molecules are required to move against a concentration gradient – this requires energy Transport proteins in the cell membrane actively move specific substances across the membrane from a high to low concentration ATP provides this energy
  • 54. Active Transport Transmission of nerve signals involves exchange of sodium and potassium ions by diffusion across the cell membrane. When fatigued it is necessary to pump these ions against a concentration gradient back to the other side
  • 55. Active Transport Another example is the absorption of glucose. If the concentration in the gut is higher than the blood it will diffuse, but if it is lower, it will only move by active transport. Why? Fish actively absorb ions through their gills to replace solutes lost in large volumes of their urine
  • 57. Facilitated Diffusion This is where some larger molecules which cannot diffuse through the membrane are helped through the membrane by special proteins. They are facilitated through. Substances like: • Glucose • Amino acids Facilitated diffusion is still passive (substances move along a concentration gradient from high to lower concentrations)