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Molluscan genomics and the  Lottia gigantea  genome project 2010 Bay Area Malacologists Meeting Eric E. Gonzales University of California at Berkeley Rokhsar Laboratory
Six species were assessed in selecting  L.gigantea  for sequencing. scabra scutum digitalis pelta limatula gigantea California coast Lottia gigantea
The  L.gigantea  genome was sequenced by the DOE JGI. Collection Libraries Sequencing Assembly Annotation Release 1 2 3 4 5 6
L.gigantea  genome tinyurl.com/LgiGenome LgiEngrailed1
L.gigantea  developmental lifecycle Fertilization Cleavage Organizer Trochophore Veliger Metamorphosis Adult
Aquaculture of  L.gigantea  has met with mixed success. Gaba Percent Metamorphosis Competent larva GABAnergic neurons Laboratory aquaculture
SEM and confocal datasets are central to establishing a developmental digital atlas. Ventral Dorsal SEM CSP
A 96-well in situ protocol detects new expression patterns for low-abundance genes. Ventral Posterior Lateral Lgi-Bra 15 hours
Organizer loss and duplication transforms the body plan. Anti-MAPK Light Body plan Control Radial Twin
Isolated trochoblasts undergo normal development. 88 cells Trochophore Embryo Cultured Isolation
Next-generation sequencing is the  revolution . ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Acknowledgements ,[object Object],[object Object],[object Object],[object Object]

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2010 BAM Talk

  • 1. Molluscan genomics and the Lottia gigantea genome project 2010 Bay Area Malacologists Meeting Eric E. Gonzales University of California at Berkeley Rokhsar Laboratory
  • 2. Six species were assessed in selecting L.gigantea for sequencing. scabra scutum digitalis pelta limatula gigantea California coast Lottia gigantea
  • 3. The L.gigantea genome was sequenced by the DOE JGI. Collection Libraries Sequencing Assembly Annotation Release 1 2 3 4 5 6
  • 4. L.gigantea genome tinyurl.com/LgiGenome LgiEngrailed1
  • 5. L.gigantea developmental lifecycle Fertilization Cleavage Organizer Trochophore Veliger Metamorphosis Adult
  • 6. Aquaculture of L.gigantea has met with mixed success. Gaba Percent Metamorphosis Competent larva GABAnergic neurons Laboratory aquaculture
  • 7. SEM and confocal datasets are central to establishing a developmental digital atlas. Ventral Dorsal SEM CSP
  • 8. A 96-well in situ protocol detects new expression patterns for low-abundance genes. Ventral Posterior Lateral Lgi-Bra 15 hours
  • 9. Organizer loss and duplication transforms the body plan. Anti-MAPK Light Body plan Control Radial Twin
  • 10. Isolated trochoblasts undergo normal development. 88 cells Trochophore Embryo Cultured Isolation
  • 11.
  • 12.

Notas del editor

  1. $800-4000 / lane 35, 75 , 100 bp / read 20 million reads / lane (1.5 gigabases / lane) For 50 individuals with barcoded genomes 400,000 reads / genotype 40 million bp / genotype Human = 3 gigabases Lottia = .5 gigabases