Nell’iperspazio con Rocket: il Framework Web di Rust!
FruitBreedomics 1st Annual meeting 20120208 Presentation of Rosbreed major outcomes
1. Cornell
MSU Susan Brown
Amy Iezzoni (PD) Kenong Xu
Jim Hancock
Dechun Wang Clemson
Cholani Weebadde Ksenija Gasic
Gregory Reighard
Univ. of Arkansas
John Clark Texas A&M
WSU USDA-ARS
Cameron Peace Dave Byrne
Nahla Bassil
Dorrie Main Gennaro Fazio Univ. of CA-Davis
Kate Evans Univ. of Minnesota
Jim Luby Chad Finn Tom Gradziel
Karina Gallardo
Raymond Jussaume Chengyan Yue Plant Research Intl, Carlos Crisosto
Vicki McCracken Netherlands
Nnadozie Oraguzie Oregon State Univ. Eric van de Weg Univ. of New Hamp.
Mykel Taylor Alexandra Stone Marco Bink Tom Davis
2. International Collaborators
Plant Research International, Netherlands
East Malling Research, UK Andres Bello University, Chile
CRA-FRU, Rome, Italy Plant & Food Research, New Zealand
IASMA, Trento, Italy ARC, South Africa
INRA (Bordeaux, Avignon, Angers), France
RosBREED
participant
location
+ 2 Scientific Advisory Panel members (Spain, New Zealand)
5. RosBREED’s “Work Packages” (5 Objs)
1) Enhance new cultivar adoption, enlarge market potential,
increase consumption
= socio-economics knowledge of trait values
2) Establish sustainable infrastructure for MAB in Rosaceae
= genome scanning capability, new QTLs (“jewels”)
3) Integrate socio-econ and genomics resources into breeding
= pedigree-based breeding information management system
4) Conduct MAB in demo breeding programs, fruit quality focus
= MAB implementation
5) Enhance sustainability of cultivar development
= tech transfer to more breeders & engage other stakeholders
6. “Jewels in the Genome”
- discovering, polishing, applying
QTL discovery MAB Pipelining Breeding
(looks promising...) (polishing...) (assembling into
masterpieces)
7. SNP Genome Scans
Illumina Infinium® arrays:
Peach: 9K Apple: 8K Cherry: 6K
Genotype obtained for
screened sweet cherry
germplasm
SNP failed
8. Reference Germplasm
Minnesota
BP Set
(n=160)
CROP
Washington Any breeder’s
BREEDING
BP Set REFERENCE PEDIGREE
additional
(n=160) SET SETS
data
n=480
New York
BP Set
(n=160)
13. MAB Successes So Far
Two Jewels in routine use
New generations enriched
WSU apple & sweet
for favourable alleles
cherry breeding programs
est. $80K saved from 2011
cherry seedling culling alone!
15. Cornell
MSU Susan Brown
Amy Iezzoni (PD) Kenong Xu
Jim Hancock
Dechun Wang Clemson
Cholani Weebadde Ksenija Gasic
Gregory Reighard
Univ. of Arkansas
John Clark Texas A&M
WSU USDA-ARS
Cameron Peace Dave Byrne
Nahla Bassil
Dorrie Main Gennaro Fazio Univ. of CA-Davis
Kate Evans Univ. of Minnesota
Jim Luby Chad Finn Tom Gradziel
Karina Gallardo
Raymond Jussaume Chengyan Yue Plant Research Intl, Carlos Crisosto
Vicki McCracken Netherlands
Nnadozie Oraguzie Oregon State Univ. Eric van de Weg Univ. of New Hamp.
Mykel Taylor Alexandra Stone Marco Bink Tom Davis
16. Cross Assist
Find it at:
www.rosaceae.org/bt_cross_planning_tool/ca_front_page
or simply on the GDR under “Breeders Toolbox”