ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID
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ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID
- 1. G. A. Thorisson, University of Leicester http://www.orcid.org The digital scholar, identity on the Web and ORCID Gudmundur A. Thorisson <gt50@le.ac.uk> Tony Brookes bioinformatics group Departments of Genetics University of Leicester -- Outline -- • How did I get sucked into this stuff? • Ongoing/planned genetic researcher data pub. projects w/ ORCID component • How might ORCID fit into the broader online identity landscape? This work can be freely copied, redistributed and adapted, as long as proper attribution is given ORCID Participant Meeting, Harvard 18 May 2011 1 Wednesday, 18 May 2011
- 2. G. A. Thorisson, University of Leicester http://www.orcid.org Prologue ORCID Participant Meeting, Harvard 18 May 2011 2 Wednesday, 18 May 2011
- 3. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 3 Wednesday, 18 May 2011
- 4. G. A. Thorisson, University of Leicester http://www.orcid.org Prof Anthony J Brookes GEN2PHEN coordinator Chair, Bioinformatics and Genomics Department of Genetics University of Leicester, UK ORCID Participant Meeting, Harvard 18 May 2011 4 Wednesday, 18 May 2011
- 5. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 5 Wednesday, 18 May 2011
- 6. G. A. Thorisson, University of Leicester http://www.orcid.org The data sharing problem ORCID Participant Meeting, Harvard 18 May 2011 6 Wednesday, 18 May 2011
- 7. G. A. Thorisson, University of Leicester http://www.orcid.org Lack of incentives for sharing • Effort required to prepare, package and submit datasets to public repositories • Time better spent writing papers & grants • All sticks (funders, journals) - no carrots • Need incentives - treat data as publications, credit creators “[...] Many of the issues regarding data availability can be addressed if the principles of “publication” rather than “sharing” are applied. However, online data publication systems also need to develop mechanisms for data citation and indices of data access comparable to those for citation systems in print journals” Costello, M. Motivating Online Publication of Data. BioScience (2009) vol. 59 (5) pp. 418-427 ORCID Participant Meeting, Harvard 18 May 2011 7 Wednesday, 18 May 2011
- 8. G. A. Thorisson, University of Leicester http://www.orcid.org Name ambiguity => attribution challenges ? ORCID ORCID ID: B-1242-2010 F67572010 G. Thorisson, Univ. Leicester G. A. Thorisson, Univ. Leicester G. A. Thorisson, Cold Spring Harbor Lab. ORCID ID: G-1442-2009 J. Smith, Univ. North Pole ORCID ID: D-2400-2010 J. Smith, Luthor Corporation ORCID Participant Meeting, Harvard 18 May 2011 Wednesday, 18 May 2011
- 9. G. A. Thorisson, University of Leicester http://www.orcid.org Projects ORCID Participant Meeting, Harvard 18 May 2011 9 Wednesday, 18 May 2011
- 10. G. A. Thorisson, University of Leicester http://www.orcid.org Cafe Variome - facilitating exchange of genetic data 1. Diagnostic 2. Central 3. End-users (e.g. laboratories ‘clearinghouse’ LSDB curators) Publish data Retrieve Atom feeds Submi&ng muta,ons from diagnos,c labs using “Café Data are shared with diverse RouGE enabled” so<ware via 3rd par,es via manual simple bu@on click retrieval or automated feed-‐ based monitoring/retrieval ORCID Participant Meeting, Harvard 18 May 2011 10 10 Wednesday, 18 May 2011
- 11. G. A. Thorisson, University of Leicester http://www.orcid.org Cafe Variome - facilitating exchange of genetic data Data shared with diverse 3rd par,es and data usage/cita,on tracked via DOI Submission from diag. lab ✔ DOI assigned to incoming data upload dbSNP (coding) UniProt PhenCode Already stable IDs so no DOI assigned A@ribu,on given to data submi@ers via ORCID unique iden,fier Metadata describing varia,on data published elsewhere ORCID Participant Meeting, Harvard 18 May 2011 11 Wednesday, 18 May 2011
- 12. G. A. Thorisson, University of Leicester http://www.orcid.org Cafe Variome - facilitating exchange of genetic data Data shared with diverse 3rd par,es and data usage/cita,on tracked via DOI Submission from diag. lab ✔ DOI assigned to incoming data upload dbSNP (coding) UniProt PhenCode Already stable IDs so no DOI assigned A@ribu,on given to data submi@ers via ORCID unique iden,fier Metadata describing varia,on data published elsewhere ORCID Participant Meeting, Harvard 18 May 2011 11 Wednesday, 18 May 2011
- 13. G. A. Thorisson, University of Leicester http://www.orcid.org Publication credit for Cafe Variome deposits 4x variants in BRCA2 gene in patient X G. Thorisson, Univ. Leicester gthorisson@gmail.com ORCID ID: A-883-2010 CV user has linked his user account with his ORCID profile ORCID Participant Meeting, Harvard 18 May 2011 Wednesday, 18 May 2011 12
- 14. G. A. Thorisson, University of Leicester http://www.orcid.org Publication credit for Cafe Variome deposits 4x variants in BRCA2 gene in patient X G. Thorisson, Univ. Leicester gthorisson@gmail.com ORCID ID: A-883-2010 CV user has linked his user account with his ORCID profile G. A. Thorisson (A-883-2010). 4x variants in BRCA2 gene. Published online via Cafe Variome. 21 January (2011) doi:10.1255/caferouge.BRCA2-2352354 => http://api.caferouge.org/atomserver/v1/caferouge/mutations/2352354 ORCID Participant Meeting, Harvard 18 May 2011 Wednesday, 18 May 2011 12
- 15. G. A. Thorisson, University of Leicester http://www.orcid.org GWAS nanopublications • Foray into semantic publishing – GWAS Central as ‘nano-publisher’ – variant<->disease assertion as nanopub rs19243 <associatedWith> Type II diabetes + condition & provenance • Provenance part to include: – Contributors IDs – Contributor roles: • Author(s) on original GWAS paper • Curator • Registrant • Citability: register DOI for nanopub? ORCID Participant Meeting, Harvard 18 May 2011 13 Wednesday, 18 May 2011
- 16. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID collaborative development ORCID Participant Meeting, Harvard 18 May 2011 14 Wednesday, 18 May 2011
- 17. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID collaborative development ORCID Participant Meeting, Harvard 18 May 2011 14 Wednesday, 18 May 2011
- 18. G. A. Thorisson, University of Leicester http://www.orcid.org Online identity and attribution ORCID Participant Meeting, Harvard 18 May 2011 15 Wednesday, 18 May 2011
- 19. G. A. Thorisson, University of Leicester http://www.orcid.org Key ORCID use case: submitting manuscript to journal Attribution link deposited into ORCID: A-883-2010 <created> 10.4259/psycho-review.gbilder2010.Foobar Bilder, G. Foobar (A-883-2010) study of cracked pots in Uruguy. Psychoceramics Review. Published online May 23 2010. doi:10.4259/psycho-review.gbilder2010.Foobar ORCID Participant Meeting, Harvard 18 May 2011 Wednesday, 18 May 2011
- 20. G. A. Thorisson, University of Leicester http://www.orcid.org • But, there’s lots more ways of contributing to science • I want be acknowledged for .... ORCID Participant Meeting, Harvard 18 May 2011 17 Wednesday, 18 May 2011
- 21. G. A. Thorisson, University of Leicester http://www.orcid.org ... my data publications in Dryad and other public repos ORCID Participant Meeting, Harvard 18 May 2011 18 Wednesday, 18 May 2011
- 22. G. A. Thorisson, University of Leicester http://www.orcid.org .. my nanopublications $%%&'()*" !" +" #" ORCID Participant Meeting, Harvard 18 May 2011 19 Wednesday, 18 May 2011
- 23. G. A. Thorisson, University of Leicester http://www.orcid.org .. my nanopublications $%%&'()*" !" +" #" ORCID Participant Meeting, Harvard 18 May 2011 19 Wednesday, 18 May 2011
- 24. G. A. Thorisson, University of Leicester http://www.orcid.org ... my Taverna analytical workflows and other digital research objects published on myExperiment ORCID Participant Meeting, Harvard 18 May 2011 20 Wednesday, 18 May 2011
- 25. G. A. Thorisson, University of Leicester http://www.orcid.org ... my Wikipedia contributions ORCID Participant Meeting, Harvard 18 May 2011 21 Wednesday, 18 May 2011
- 26. G. A. Thorisson, University of Leicester http://www.orcid.org ... my contributions to open-source software projects ORCID Participant Meeting, Harvard 18 May 2011 22 Wednesday, 18 May 2011
- 27. G. A. Thorisson, University of Leicester http://www.orcid.org • etc. etc. etc. • In short, ‘I wanna’ aggregate all those contributions and showcase me as a ‘digital scholar’ Challenge: Identity fragmentation ORCID Participant Meeting, Harvard 18 May 2011 23 Wednesday, 18 May 2011
- 28. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24 Wednesday, 18 May 2011
- 29. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24 Wednesday, 18 May 2011
- 30. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24 Wednesday, 18 May 2011
- 31. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24 Wednesday, 18 May 2011
- 32. G. A. Thorisson, University of Leicester http://www.orcid.org How do I link all those different sub-identities together that matter to me professionally? ORCID Participant Meeting, Harvard 18 May 2011 25 Wednesday, 18 May 2011
- 33. G. A. Thorisson, University of Leicester http://www.orcid.org Technologically, this is not rocket science ORCID Participant Meeting, Harvard 18 May 2011 26 Wednesday, 18 May 2011
- 34. G. A. Thorisson, University of Leicester http://www.orcid.org Technologically, this is not rocket science ORCID Participant Meeting, Harvard 18 May 2011 26 Wednesday, 18 May 2011
- 35. G. A. Thorisson, University of Leicester http://www.orcid.org Single sign-on with social IDs ORCID Participant Meeting, Harvard 18 May 2011 27 Wednesday, 18 May 2011
- 36. G. A. Thorisson, University of Leicester http://www.orcid.org What’s love ORCID gotta do with it? An online identity for the digital scholar, centred on contributor ID? ORCID Participant Meeting, Harvard 18 May 2011 29 28 Wednesday, 18 May 2011
- 37. G. A. Thorisson, University of Leicester http://www.orcid.org What’s love ORCID gotta do with it? An online identity for the digital scholar, centred on contributor ID? ORCID ID: B-1242-2010 G. Thorisson, Univ. Leicester G. A. Thorisson, Univ. Leicester G. A. Thorisson, Cold Spring Harbor Lab. http://mummi.myopenid.com ORCID Participant Meeting, Harvard 18 May 2011 29 28 Wednesday, 18 May 2011
- 38. G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 29 Wednesday, 18 May 2011
- 39. G. A. Thorisson, University of Leicester http://www.orcid.org Acknowledgements GEN2PHEN Consortium This work has received funding from http://www.gen2phen.org/about-gen2phen/partners the European Community's Seventh Framework Programme (FP7/2007-2013) under grant agreement number 200754 - the GEN2PHEN project. Anthony J. Brookes Bioinformatics Group Contact me! Gudmundur ‘Mummi’ Thorisson <gt50@le.ac.uk> |<gthorisson@gmail.com> http://friendfeed.com/mummi http://www.linkedin.com/in/mummi http://www.twitter.com/gthorisson ORCID Participant Meeting, Harvard 18 May 2011 30 Wednesday, 18 May 2011