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IB Biology
2 Cells
2.4 Cell Membranes
All syllabus statements ©IBO 2007
All images CC or public domain or link to original material.
Jason de Nys




                                                               http://www.flickr.com/photos/edsweeney/6346198056/
2.4.1 Draw and label a diagram to show the structure of membranes.




                                                           http://www.youtube.com/watch?v=w9VBHGNoFrY
2.4.2 Explain how the hydrophobic and hydrophilic properties of phospholipids help to maintain
the structure of cell membranes.


                                            What happens when
                                                 you put a drop
                                                       of oil in
                                                        water?




                                                        http://www.flickr.com/photos/zorin-denu/5385963280/
The Oil droplet stays together and makes
a perfect circular shape.
                               The oil
                               molecules are
                               Hydrophobic
                Oil Molecules are non-
                polar and water
                molecules are polar.
                See 3.1.5




                            http://www.flickr.com/photos/zorin-denu/5385963280/
Phospholipid
                                          molecules have a
                                            polar (charged)
                                       phosphate head and
                                        long non-polar lipid
                                                       tails

            *                         The head is attracted
                                          to water and the
                                              tails are not.


*h not b!       http://commons.wikimedia.org/wiki/File:Cell_membrane_detailed_diagram_4.svg
When put into water, an emergent property is that
phospholipids will self-organise to keep their heads
            ‘wet’ and their tails ‘dry’




       micelle                                liposome
                          http://commons.wikimedia.org/wiki/File:Micelle_scheme-en.svg
                          http://commons.wikimedia.org/wiki/File:Liposome_scheme-en.svg
In this 3D representation
    you can see that a
 phospholipid bilayer is
  one way that the tails
can be removed from the
          water.


Phospholipid molecules
can flow past each other
laterally but can’t move
        vertically



                  http://commons.wikimedia.org/wiki/File:Phospholipids_aqueous_solution_structures.svg
But wait! there’s more!
The plasma membrane is not just made of
             phospholipids




           http://commons.wikimedia.org/wiki/File:Cell_membrane_detailed_diagram_en.svg?uselang=en-gb
Proteins:
Integral proteins are permanently embedded, many go all the way
through and are polytopic (poly = many, topic = surface), integral
proteins penetrating just one surface are monotopic.

Peripheral proteins usually have a temporary association with the
membrane, they can be monotopic or attach to the surface




                                            Some human examples on the next page
Beta-secretase 1
               (peripheral) has a role
                    in creating myelin




                                                                                                      Extracellular
               sheaths on nerve cells




                                                                                                       (outside)
These are just three
examples, they are
from different cell
types.                                         Beta-secretase 1




                                                                                                      membrane
There are thousands




                                                                                                        In the
                                   Glycophorin (integral) carries sugar
that have been found               molecules into red blood cells
so far and thousands
more are added each
year.
Protein structure covered




                                                                                                      Cytoplasm
                                                                             Glycophorin A




                                                                                                       (inside)
in AHL 7.5
                 Muscle Fatty acid binding
                    protein (peripheral) is
               involved in the transport of
                                 fatty acids    Muscle fatty acid
                                                binding protein
                                                              http://opm.phar.umich.edu/protein.php?pdbid=2wf1
                                                               http://opm.phar.umich.edu/protein.php?pdbid=1afo
                                                              http://opm.phar.umich.edu/protein.php?pdbid=1hmt
Glycoproteins:
Are proteins with an oligosaccaride (oligo = few, saccharide = sugar)
chain attached.

They are important for cell recognition by the immune system and
as hormone receptors
Cholesterol: (It’s not all bad!)
It makes the phospholipids pack more tightly and regulates the
fluidity and flexibility of the membrane.          more later in 2.4.8

Bad analogy: imagine a room full of people wearing fluffy jumpers (sweaters).
It is crowded but they can slip past each other easily enough.
Now sprinkle the crowd with people wearing Velcro™ suits…
2.4.3 List the functions of membrane proteins

         List: Give a sequence of names or other brief answers with no explanation



        Proteins associated with membranes have many functions.
        Can you think of any ‘jobs’ that proteins could help cells do?



              Let’s look at
1
    Cell Adhesion Molecules:
    Enable cells to make tight
    connections to one
    another


                                                        They may play a
                                                     part in the immune
                                                               response.




                                 http://www.flickr.com/photos/silveraquarius/1395277674/
2   Channel Proteins: Allow or help ions and large molecules to
    pass through the membrane by diffusion




                                        http://www.flickr.com/photos/gilderic/2728059828/
3   Protein Pumps move ions
    across the membrane to
    create and maintain
    concentration gradients.

    They require energy to carry
    out this active transport




              http://www.flickr.com/photos/erix/298857080/
4   Hormone Binding sites (hormone
    receptors) bind to specific hormones and
    start signalling processes to change the
    behaviour of the cell




      e.g. insulin

                                  http://www.flickr.com/photos/18735339@N00/2926816259/
5   Cell to cell communication:
    e.g. receptors for
    neurotransmitters at
    synapses


                               Outside cell


                               Inside membrane



                               Cytoplasm

        Nicotinic acetylcholine
        receptor, beta2 subunit


                                    http://ifaketext.com/
        http://opm.phar.umich.edu/protein.php?pdbid=2ksr
6                                             Enzymes on the surface of
                                              the cell




                                        Outer surface of membrane

    Plasma platelet activating factor
           acetylhydrolase




                                                 http://opm.phar.umich.edu/protein.php?pdbid=3d59
2.4.4 Define diffusion and osmosis



     What is




                                     http://www.flickr.com/photos/dpup/3338948041/
Diffusion, is the motion of all (liquid or gas) particles at
temperatures above absolute zero.
• The rate of this movement relates to temperature, viscosity of
  the fluid and the size (mass) of the particles.
• Diffusion explains the net flow of molecules from a region of
  higher concentration to one of lower concentration.
• The result of diffusion is a gradual mixing of material. In the
  absence of other influences, the diffusion process will
  eventually result in complete mixing.

                                 Diffusive equilibrium is
                                 reached when
                                 the concentrations of
                                 the diffusing substance in
                                 the two compartments
                                 becomes equal. (Wikipedia)
1. Grab your classmates or a group
     Simulate!                of friends.
                           2. Take one die each.
                           3. Stand together in a clump; in a
                              room or outside.
                           4. Everybody rolls their die in their
                              hand
If you have 4 sided dice   5. For a 1, step forward; for a 2,
   then all the better.       step to the right; for a 3, step
This simulation is known
    as a random walk.
                              backwards and for a 4, step left
                           6. If you roll 5 or 6, or if you can’t
How could you simulate        move because a person or
  an increase of heat
        energy?
                              object is in the way, roll again

                           Do this for 3 minutes, you should
                           have dispersed, some will have got
                           further than others.
                                    http://www.flickr.com/photos/stevon/3145375973/
What is


  osmosis?
          http://www.flickr.com/photos/luchilu/399970490/
Osmosis may occur when there is a partially
permeable membrane, such as a cell
membrane.
When a cell is submerged in water, the water
molecules pass through the cell membrane
from an area of low solute concentration
(outside the cell) to one of high solute
concentration (inside the cell) (Wikipedia)


                          Aquaporin is an integral protein that, as
                          it’s name suggests, acts as a pore in the
                          membrane that speeds the movement
                          of water molecules



                                         http://opm.phar.umich.edu/protein.php?pdbid=1sor
The
importance
of osmotic
control




             http://commons.wikimedia.org/wiki/File:Osmotic_pressure_on_blood_cells_diagram.svg
             http://commons.wikimedia.org/wiki/File:Turgor_pressure_on_plant_cells_diagram.svg
2.4.5 Explain passive transport across membranes in terms of simple diffusion and facilitated
diffusion.




          Simple
         Diffusion


                                http://commons.wikimedia.org/wiki/File:Scheme_simple_diffusion_in_cell_membrane-en.svg
Facilitated Diffusion:
Large and polar molecules can’t get across the membrane via
simple diffusion
Transmembrane (polytopic) proteins recognise a particular
molecule and help it to move across the membrane. The
direction it moves is dependent on the concentration gradient.
                                                                             Watch the animation




                http://commons.wikimedia.org/wiki/File:Scheme_facilitated_diffusion_in_cell_membrane-en.svg
2.4.6 Explain the role of protein pumps and ATP in active transport across membranes

    Primary active transport requires ATP.
    Integral protein pumps use the energy from the
    hydrolysis of ATP to move ions or large
    molecules across the cell membrane.
    Molecules are moved against their
    concentration gradient




                                    http://commons.wikimedia.org/wiki/File:Scheme_sodium-potassium_pump-en.svg
In secondary active transport, the required energy is
derived from energy stored in the form of concentration
differences in a second solute.




                      http://commons.wikimedia.org/wiki/File:Scheme_secundary_active_transport-en.svg
Typically, the
concentration
gradient of the
second solute was
created by primary
active transport,
and the diffusion of
the second solute
across the
membrane drives
secondary active
transport.
2.4.7 Explain how vesicles are used to transport materials within a cell between the rough
endoplasmic reticulum, Golgi apparatus and plasma membrane.


 Vesicles are small
 spheroidal
 packages that bud
 off of the RER and
 the Golgi apparatus

 They carry proteins
 produced by
 ribosomes on the
 RER to the Golgi
 apparatus, where
 they are prepared
 for export from the
 cell via another
 vesicle
2.4.8 Describe how the fluidity of the membrane allows it to change shape, break and reform
during endocytosis and exocytosis.



     Endocytosis: The taking in
     of external substances by an
     inward pouching of the
     plasma membrane, forming
     a vesicle

     Exocytosis: The release of
     substances from a cell
     (secretion) when a vesicle
     joins with the cell plasma
     membrane.

                         Diagrams on following slides
Constitutive
secretion
occurs
continuously in
cells,
depending on
their function
                                               Regulated
                                               secretion is in
                                               response to a
                                               trigger e.g. the
                                               release of
                                               neurotransmitters




                  http://commons.wikimedia.org/wiki/File:Exocytosis_types.svg
“Cell eating”   “Cell drinking”



                           http://commons.wikimedia.org/wiki/File:Endocytosis_types.svg
As mentioned, phospholipids can move freely past each other
    laterally but very rarely do they move vertically or flip
     The plasma membrane is embedded with proteins
   Cholesterol molecules stiffen and stabilise the plasma
                       membrane
 It is because of the lateral movement and the presence of
other molecules studding it’s surface that our understanding
         of the plasma membrane is referred to as the


            fluid mosaic model
Further information:




   Most of the excellent biology images in this slideshow are by graphic designer
   Mariana Ruiz Villarreal (LadyofHats) who has graciously released them to the
                                   public domain.

                                                      Three of the best sites for
                                                      IB-specific Biology
                                                      information. The top link
                                                      takes you to the PPT by
                                                      Stephen Taylor

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IB Biology Core 2.4: Cell Membranes

  • 1. IB Biology 2 Cells 2.4 Cell Membranes All syllabus statements ©IBO 2007 All images CC or public domain or link to original material. Jason de Nys http://www.flickr.com/photos/edsweeney/6346198056/
  • 2. 2.4.1 Draw and label a diagram to show the structure of membranes. http://www.youtube.com/watch?v=w9VBHGNoFrY
  • 3. 2.4.2 Explain how the hydrophobic and hydrophilic properties of phospholipids help to maintain the structure of cell membranes. What happens when you put a drop of oil in water? http://www.flickr.com/photos/zorin-denu/5385963280/
  • 4. The Oil droplet stays together and makes a perfect circular shape. The oil molecules are Hydrophobic Oil Molecules are non- polar and water molecules are polar. See 3.1.5 http://www.flickr.com/photos/zorin-denu/5385963280/
  • 5. Phospholipid molecules have a polar (charged) phosphate head and long non-polar lipid tails * The head is attracted to water and the tails are not. *h not b! http://commons.wikimedia.org/wiki/File:Cell_membrane_detailed_diagram_4.svg
  • 6. When put into water, an emergent property is that phospholipids will self-organise to keep their heads ‘wet’ and their tails ‘dry’ micelle liposome http://commons.wikimedia.org/wiki/File:Micelle_scheme-en.svg http://commons.wikimedia.org/wiki/File:Liposome_scheme-en.svg
  • 7. In this 3D representation you can see that a phospholipid bilayer is one way that the tails can be removed from the water. Phospholipid molecules can flow past each other laterally but can’t move vertically http://commons.wikimedia.org/wiki/File:Phospholipids_aqueous_solution_structures.svg
  • 8. But wait! there’s more! The plasma membrane is not just made of phospholipids http://commons.wikimedia.org/wiki/File:Cell_membrane_detailed_diagram_en.svg?uselang=en-gb
  • 9. Proteins: Integral proteins are permanently embedded, many go all the way through and are polytopic (poly = many, topic = surface), integral proteins penetrating just one surface are monotopic. Peripheral proteins usually have a temporary association with the membrane, they can be monotopic or attach to the surface Some human examples on the next page
  • 10. Beta-secretase 1 (peripheral) has a role in creating myelin Extracellular sheaths on nerve cells (outside) These are just three examples, they are from different cell types. Beta-secretase 1 membrane There are thousands In the Glycophorin (integral) carries sugar that have been found molecules into red blood cells so far and thousands more are added each year. Protein structure covered Cytoplasm Glycophorin A (inside) in AHL 7.5 Muscle Fatty acid binding protein (peripheral) is involved in the transport of fatty acids Muscle fatty acid binding protein http://opm.phar.umich.edu/protein.php?pdbid=2wf1 http://opm.phar.umich.edu/protein.php?pdbid=1afo http://opm.phar.umich.edu/protein.php?pdbid=1hmt
  • 11. Glycoproteins: Are proteins with an oligosaccaride (oligo = few, saccharide = sugar) chain attached. They are important for cell recognition by the immune system and as hormone receptors
  • 12. Cholesterol: (It’s not all bad!) It makes the phospholipids pack more tightly and regulates the fluidity and flexibility of the membrane. more later in 2.4.8 Bad analogy: imagine a room full of people wearing fluffy jumpers (sweaters). It is crowded but they can slip past each other easily enough. Now sprinkle the crowd with people wearing Velcro™ suits…
  • 13. 2.4.3 List the functions of membrane proteins List: Give a sequence of names or other brief answers with no explanation Proteins associated with membranes have many functions. Can you think of any ‘jobs’ that proteins could help cells do? Let’s look at
  • 14. 1 Cell Adhesion Molecules: Enable cells to make tight connections to one another They may play a part in the immune response. http://www.flickr.com/photos/silveraquarius/1395277674/
  • 15. 2 Channel Proteins: Allow or help ions and large molecules to pass through the membrane by diffusion http://www.flickr.com/photos/gilderic/2728059828/
  • 16. 3 Protein Pumps move ions across the membrane to create and maintain concentration gradients. They require energy to carry out this active transport http://www.flickr.com/photos/erix/298857080/
  • 17. 4 Hormone Binding sites (hormone receptors) bind to specific hormones and start signalling processes to change the behaviour of the cell e.g. insulin http://www.flickr.com/photos/18735339@N00/2926816259/
  • 18. 5 Cell to cell communication: e.g. receptors for neurotransmitters at synapses Outside cell Inside membrane Cytoplasm Nicotinic acetylcholine receptor, beta2 subunit http://ifaketext.com/ http://opm.phar.umich.edu/protein.php?pdbid=2ksr
  • 19. 6 Enzymes on the surface of the cell Outer surface of membrane Plasma platelet activating factor acetylhydrolase http://opm.phar.umich.edu/protein.php?pdbid=3d59
  • 20. 2.4.4 Define diffusion and osmosis What is http://www.flickr.com/photos/dpup/3338948041/
  • 21. Diffusion, is the motion of all (liquid or gas) particles at temperatures above absolute zero. • The rate of this movement relates to temperature, viscosity of the fluid and the size (mass) of the particles. • Diffusion explains the net flow of molecules from a region of higher concentration to one of lower concentration. • The result of diffusion is a gradual mixing of material. In the absence of other influences, the diffusion process will eventually result in complete mixing. Diffusive equilibrium is reached when the concentrations of the diffusing substance in the two compartments becomes equal. (Wikipedia)
  • 22. 1. Grab your classmates or a group Simulate! of friends. 2. Take one die each. 3. Stand together in a clump; in a room or outside. 4. Everybody rolls their die in their hand If you have 4 sided dice 5. For a 1, step forward; for a 2, then all the better. step to the right; for a 3, step This simulation is known as a random walk. backwards and for a 4, step left 6. If you roll 5 or 6, or if you can’t How could you simulate move because a person or an increase of heat energy? object is in the way, roll again Do this for 3 minutes, you should have dispersed, some will have got further than others. http://www.flickr.com/photos/stevon/3145375973/
  • 23. What is osmosis? http://www.flickr.com/photos/luchilu/399970490/
  • 24. Osmosis may occur when there is a partially permeable membrane, such as a cell membrane. When a cell is submerged in water, the water molecules pass through the cell membrane from an area of low solute concentration (outside the cell) to one of high solute concentration (inside the cell) (Wikipedia) Aquaporin is an integral protein that, as it’s name suggests, acts as a pore in the membrane that speeds the movement of water molecules http://opm.phar.umich.edu/protein.php?pdbid=1sor
  • 25. The importance of osmotic control http://commons.wikimedia.org/wiki/File:Osmotic_pressure_on_blood_cells_diagram.svg http://commons.wikimedia.org/wiki/File:Turgor_pressure_on_plant_cells_diagram.svg
  • 26. 2.4.5 Explain passive transport across membranes in terms of simple diffusion and facilitated diffusion. Simple Diffusion http://commons.wikimedia.org/wiki/File:Scheme_simple_diffusion_in_cell_membrane-en.svg
  • 27. Facilitated Diffusion: Large and polar molecules can’t get across the membrane via simple diffusion Transmembrane (polytopic) proteins recognise a particular molecule and help it to move across the membrane. The direction it moves is dependent on the concentration gradient. Watch the animation http://commons.wikimedia.org/wiki/File:Scheme_facilitated_diffusion_in_cell_membrane-en.svg
  • 28. 2.4.6 Explain the role of protein pumps and ATP in active transport across membranes Primary active transport requires ATP. Integral protein pumps use the energy from the hydrolysis of ATP to move ions or large molecules across the cell membrane. Molecules are moved against their concentration gradient http://commons.wikimedia.org/wiki/File:Scheme_sodium-potassium_pump-en.svg
  • 29. In secondary active transport, the required energy is derived from energy stored in the form of concentration differences in a second solute. http://commons.wikimedia.org/wiki/File:Scheme_secundary_active_transport-en.svg
  • 30. Typically, the concentration gradient of the second solute was created by primary active transport, and the diffusion of the second solute across the membrane drives secondary active transport.
  • 31. 2.4.7 Explain how vesicles are used to transport materials within a cell between the rough endoplasmic reticulum, Golgi apparatus and plasma membrane. Vesicles are small spheroidal packages that bud off of the RER and the Golgi apparatus They carry proteins produced by ribosomes on the RER to the Golgi apparatus, where they are prepared for export from the cell via another vesicle
  • 32. 2.4.8 Describe how the fluidity of the membrane allows it to change shape, break and reform during endocytosis and exocytosis. Endocytosis: The taking in of external substances by an inward pouching of the plasma membrane, forming a vesicle Exocytosis: The release of substances from a cell (secretion) when a vesicle joins with the cell plasma membrane. Diagrams on following slides
  • 33. Constitutive secretion occurs continuously in cells, depending on their function Regulated secretion is in response to a trigger e.g. the release of neurotransmitters http://commons.wikimedia.org/wiki/File:Exocytosis_types.svg
  • 34. “Cell eating” “Cell drinking” http://commons.wikimedia.org/wiki/File:Endocytosis_types.svg
  • 35. As mentioned, phospholipids can move freely past each other laterally but very rarely do they move vertically or flip The plasma membrane is embedded with proteins Cholesterol molecules stiffen and stabilise the plasma membrane It is because of the lateral movement and the presence of other molecules studding it’s surface that our understanding of the plasma membrane is referred to as the fluid mosaic model
  • 36. Further information: Most of the excellent biology images in this slideshow are by graphic designer Mariana Ruiz Villarreal (LadyofHats) who has graciously released them to the public domain. Three of the best sites for IB-specific Biology information. The top link takes you to the PPT by Stephen Taylor