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Fabiana Kubke




Disclaimers:
• CCANZ
• PLoS ONE
• Marsden Fund

                 By saralparker CC-BY-NC-SA
                   By saralparker CC-BY-NC-SA
                 http://www.flickr.com/photos/saralparker/2189412643
                   http://www.flickr.com/photos/saralparker/2189412643
Remixing Science

                                                        • Science Communication
                                                        • Teaching
                                                        • Research




By catulle CC-BY
 By catulle CC-BY
http://www.flickr.com/photos/35986720@N03/3328266352
 http://www.flickr.com/photos/35986720@N03/3328266352
Pay to view                                         Free
                                             unpaid                    Public domain




                                                      login - request forms -
                                                       distribution - reuse -
                                                           repurposing -
                                                            attribution -
                                                        commercialisation -
                                                        formats - software
                                  By Gideon Burton,
http://www.flickr.com/photos/wakingtiger/3156790559
                                           CC-BY-SA
Data Sharing Policies


                                               ‘Investigators are expected to share with
                                                 ‘Investigators are expected to share with
                                               other researchers, at no more than
                                                 other researchers, at no more than
                                               incremental cost and within a reasonable
                                                 incremental cost and within a reasonable
                                               time, the primary data, samples, physical
                                                 time, the primary data, samples, physical
                                               collections and other supporting materials
                                                 collections and other supporting materials
                                               created or gathered in the course of work
                                                 created or gathered in the course of work
                                               under NSF grants. Grantees are expected
                                                 under NSF grants. Grantees are expected
                                               to encourage and facilitate such sharing. ‘
                                                 to encourage and facilitate such sharing. ‘

                                               (URL: http://www.nsf.gov/bfa/dias/policy/dmp.jsp Last
                                               updatedhttp://www.nsf.gov/bfa/dias/policy/dmp.jsp Last
                                                (URL: October 6 2010)
                                                updated October 6 2010)




By twid CC-BY-SA
By twid CC-BY-SA
http://www.flickr.com/photos/twid/4464227031
http://www.flickr.com/photos/twid/4464227031
Genomes Unzipped
   ‘Members of the group have had their DNA tested with a
    ‘Members of the group have had their DNA tested with a
   variety of products. We have released all of these genetic
    variety of products. We have released all of these genetic
   data openly to the public, both as raw data and in a custom
    data openly to the public, both as raw data and in a custom
   genome browser. As the project proceeds we plan to obtain
    genome browser. As the project proceeds we plan to obtain
   more genetic tests – up to and including whole genome
    more genetic tests – up to and including whole genome
   sequencing – and to continue to release these data to the
    sequencing – and to continue to release these data to the
   world.’
    world.’
   (URL: http://www.genomesunzipped.org/project retrieved October 20, 2010)
    (URL: http://www.genomesunzipped.org/project retrieved October 20, 2010)




                             By several_bees CC-BY-NC
                              By several_bees CC-BY-NC
                             http://www.flickr.com/photos/several_bees/872616087
                              http://www.flickr.com/photos/several_bees/872616087
http://www.christchurchquakemap.co.nz/
Site concept and development: Paul Nicholls Paul Nicholls of the University of Canterbury's Digital Media Group (Christchurch, New Zealand)
GeoNet is a collaboration between the Earthquake Commission
and GNS Science.
http://www.geonet.org.nz
Physiome Project



   “The Physiome Project is a worldwide effort to define the physiome through the
     “The Physiome Project is a worldwide effort to define the physiome through the
   development of databases and models which will facilitate the understanding of
     development of databases and models which will facilitate the understanding of
   the integrative function of cells, organs, and organisms. The Project is focused on
     the integrative function of cells, organs, and organisms. The Project is focused on
   compiling and providing a central repository of databases, linking experimental
     compiling and providing a central repository of databases, linking experimental
   information and computational models from many laboratories into a single, self-
     information and computational models from many laboratories into a single, self-
   consistent framework.”
     consistent framework.”
   http://www.physiome.org/About/index.html
    http://www.physiome.org/About/index.html

                     Vintage collective CC-SA                                By euthman CC-BY-SA                              By bl4ckix CC-BY-SA
http://www.flickr.com/photos/thevintagecollective/4079546261   http://www.flickr.com/photos/euthman/350879065   http://www.flickr.com/photos/blackix/511028792
CellML Project
                    “The purpose of CellML is to store and exchange
                     “The purpose of CellML is to store and exchange
                    computer-based mathematical models. CellML allows
                     computer-based mathematical models. CellML allows
                    scientists to share models even if they are using different
                     scientists to share models even if they are using different
                    model-building software. It also enables them to reuse
                     model-building software. It also enables them to reuse
                    components from one model in another, thus accelerating
                     components from one model in another, thus accelerating
                    model building.”
                     model building.”
                    http://www.cellml.org
                     http://www.cellml.org




 http://models.cellml.org/exposure/c6d3b19b455fbb3f80813337ac127674/bertram_arnot_zamponi_2002_post.cellml/view
 http://models.cellml.org/exposure/c6d3b19b455fbb3f80813337ac127674/bertram_arnot_zamponi_2002_post.cellml/view
Cardiac Atlas Project
“The Cardiac Atlas Project (CAP) is a
 “The Cardiac Atlas Project (CAP) is a
world-wide collaborative project to
 world-wide collaborative project to
establish a standardized database of
 establish a standardized database of
cardiac imaging examinations
 cardiac imaging examinations
together with derived analyses, for
 together with derived analyses, for
the purposes of statistical
 the purposes of statistical
characterization of global and
 characterization of global and
regional heart function
 regional heart function
abnormalities.”
 abnormalities.”
http://www.cardiacatlas.org
 http://www.cardiacatlas.org



                                                               By Tracey Holland CC-BY-NC-ND
                                         http://www.flickr.com/photos/traceyholland/3503793675
By net_efekt CC-BY
http://www.flickr.com/photos/wheatfields/3938462434




       “Reproducibility: The open access to all relevant core elements of a publication
         “Reproducibility: The open access to all relevant core elements of a publication
       facilitates the verification and subsequent use of published content. The scientific
         facilitates the verification and subsequent use of published content. The scientific
       journal of the future requires the publication of research data and detailed
         journal of the future requires the publication of research data and detailed
       methodologies, including code, that form the basis of any publication.”
         methodologies, including code, that form the basis of any publication.”
       http://en.wikiversity.org/wiki/Wikiversity:Journal_of_the_future (v. 23:06, 19 October 2010)
        http://en.wikiversity.org/wiki/Wikiversity:Journal_of_the_future (v. 23:06, 19 October 2010)
Cochrane Collaboration




 “All the existing primary research on a topic that meets certain criteria is
   “All the existing primary research on a topic that meets certain criteria is
 searched for and collated, and then assessed using stringent guidelines, to
   searched for and collated, and then assessed using stringent guidelines, to
 establish whether or not there is conclusive evidence about a specific
   establish whether or not there is conclusive evidence about a specific
 treatment. The reviews are updated regularly, ensuring that treatment
   treatment. The reviews are updated regularly, ensuring that treatment
 decisions can be based on the most up-to-date and reliable evidence.”
   decisions can be based on the most up-to-date and reliable evidence.”
 http://www.cochrane.org/cochrane-reviews
  http://www.cochrane.org/cochrane-reviews

                                         Image by Fimb CC-BY / http://www.flickr.com/photos/fimbrethil/2234680879/
Challenges and solutions:
                                                      Panton Principles
                                Examples:              (http://pantonprinciples.org/)
                                                      Open Definition
                                                       (http://www.opendefinition.org/)
                                                      Open Access Definitions
                                                       (http://www.arl.org/sparc/openaccess/)

                                                      NZ GOAL
                                                        (http://www.e.govt.nz/policy/nzgoal)
                                                      Wiki Projects (http://en.wikiversity.org/,
                                                        http://wikieducator.org/Main_Page,
                                                        http://openwetware.org)
                                                      Institutional mandates
By landahlauts CC-BY-NC-SA
http://www.flickr.com/photos/landahlauts/1356033909

                                                      Need to find consensus across different
                                                       jurisdictions and institutions on
                                                       interpretation of terms.
                                                      Need to value the data
Nat Torkington - Bjoern Brembs - Cameron Neylon - Daniel Mietchen
       Jean-Claude Bradley - Jonathan Eisen - Bill Cameron Bora Zivcovick - MietchenPiwowar
                 Nat Torkington - Bjoern Brembs - Hooker - Neylon - Daniel Heather
        Jean-Claude Bradley Neil Saunders - Alistair Hooker - Martin Fenner –- Paul Nicholls
         Peter Murray-Rust - - Jonathan Eisen - Bill Young - Bora Zivcovick Heather Piwowar
         Bill Hooker - Ed Strafford Saunders Treolar - David McCandless - Chris McDowall
          Peter Murray-Rust - Neil - Andrew - Alistair Young - Martin Fenner – Paul Nicholls
          Claudia Koltzenburg Randall BrittenTreolar - CarverMcCandless --Chris McDowall
          Bill Hooker - Ed Strafford - Andrew - Julian David - Pia Waugh Steve Koch
            Claudia Koltzenburg Randall Britten - Julian Carver - Pia Waugh - Steve Koch
                      FriendFeed - Twitter - Science3point0 - WikiEducator
         Creative Commons Aotearoa New Zealand - Govt NinjasWikiEducator
                       FriendFeed - Twitter - Science3point0 - - Open Science – KiwiFoo
          Creative Commons Open Science Summit - - Govt Ninjas - Open Science – KiwiFoo
                   SciFoo - Aotearoa New Zealand Science Online - Wikiversity
                    SciFoo - Open Science Summit - Science Online - Wikiversity




By Blueridgeskitties CC-BY-NC-SA                                                         By jporrier CC-BY-SA
http://www.flickr.com/photos/blueridgekitties/4419380931     http://www.flickr.com/photos/jepoirrier/349580669

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Ccanz webinar-oaw

  • 1. Fabiana Kubke Disclaimers: • CCANZ • PLoS ONE • Marsden Fund By saralparker CC-BY-NC-SA By saralparker CC-BY-NC-SA http://www.flickr.com/photos/saralparker/2189412643 http://www.flickr.com/photos/saralparker/2189412643
  • 2. Remixing Science • Science Communication • Teaching • Research By catulle CC-BY By catulle CC-BY http://www.flickr.com/photos/35986720@N03/3328266352 http://www.flickr.com/photos/35986720@N03/3328266352
  • 3.
  • 4. Pay to view Free unpaid Public domain login - request forms - distribution - reuse - repurposing - attribution - commercialisation - formats - software By Gideon Burton, http://www.flickr.com/photos/wakingtiger/3156790559 CC-BY-SA
  • 5. Data Sharing Policies ‘Investigators are expected to share with ‘Investigators are expected to share with other researchers, at no more than other researchers, at no more than incremental cost and within a reasonable incremental cost and within a reasonable time, the primary data, samples, physical time, the primary data, samples, physical collections and other supporting materials collections and other supporting materials created or gathered in the course of work created or gathered in the course of work under NSF grants. Grantees are expected under NSF grants. Grantees are expected to encourage and facilitate such sharing. ‘ to encourage and facilitate such sharing. ‘ (URL: http://www.nsf.gov/bfa/dias/policy/dmp.jsp Last updatedhttp://www.nsf.gov/bfa/dias/policy/dmp.jsp Last (URL: October 6 2010) updated October 6 2010) By twid CC-BY-SA By twid CC-BY-SA http://www.flickr.com/photos/twid/4464227031 http://www.flickr.com/photos/twid/4464227031
  • 6. Genomes Unzipped ‘Members of the group have had their DNA tested with a ‘Members of the group have had their DNA tested with a variety of products. We have released all of these genetic variety of products. We have released all of these genetic data openly to the public, both as raw data and in a custom data openly to the public, both as raw data and in a custom genome browser. As the project proceeds we plan to obtain genome browser. As the project proceeds we plan to obtain more genetic tests – up to and including whole genome more genetic tests – up to and including whole genome sequencing – and to continue to release these data to the sequencing – and to continue to release these data to the world.’ world.’ (URL: http://www.genomesunzipped.org/project retrieved October 20, 2010) (URL: http://www.genomesunzipped.org/project retrieved October 20, 2010) By several_bees CC-BY-NC By several_bees CC-BY-NC http://www.flickr.com/photos/several_bees/872616087 http://www.flickr.com/photos/several_bees/872616087
  • 7. http://www.christchurchquakemap.co.nz/ Site concept and development: Paul Nicholls Paul Nicholls of the University of Canterbury's Digital Media Group (Christchurch, New Zealand) GeoNet is a collaboration between the Earthquake Commission and GNS Science. http://www.geonet.org.nz
  • 8. Physiome Project “The Physiome Project is a worldwide effort to define the physiome through the “The Physiome Project is a worldwide effort to define the physiome through the development of databases and models which will facilitate the understanding of development of databases and models which will facilitate the understanding of the integrative function of cells, organs, and organisms. The Project is focused on the integrative function of cells, organs, and organisms. The Project is focused on compiling and providing a central repository of databases, linking experimental compiling and providing a central repository of databases, linking experimental information and computational models from many laboratories into a single, self- information and computational models from many laboratories into a single, self- consistent framework.” consistent framework.” http://www.physiome.org/About/index.html http://www.physiome.org/About/index.html Vintage collective CC-SA By euthman CC-BY-SA By bl4ckix CC-BY-SA http://www.flickr.com/photos/thevintagecollective/4079546261 http://www.flickr.com/photos/euthman/350879065 http://www.flickr.com/photos/blackix/511028792
  • 9. CellML Project “The purpose of CellML is to store and exchange “The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows computer-based mathematical models. CellML allows scientists to share models even if they are using different scientists to share models even if they are using different model-building software. It also enables them to reuse model-building software. It also enables them to reuse components from one model in another, thus accelerating components from one model in another, thus accelerating model building.” model building.” http://www.cellml.org http://www.cellml.org http://models.cellml.org/exposure/c6d3b19b455fbb3f80813337ac127674/bertram_arnot_zamponi_2002_post.cellml/view http://models.cellml.org/exposure/c6d3b19b455fbb3f80813337ac127674/bertram_arnot_zamponi_2002_post.cellml/view
  • 10. Cardiac Atlas Project “The Cardiac Atlas Project (CAP) is a “The Cardiac Atlas Project (CAP) is a world-wide collaborative project to world-wide collaborative project to establish a standardized database of establish a standardized database of cardiac imaging examinations cardiac imaging examinations together with derived analyses, for together with derived analyses, for the purposes of statistical the purposes of statistical characterization of global and characterization of global and regional heart function regional heart function abnormalities.” abnormalities.” http://www.cardiacatlas.org http://www.cardiacatlas.org By Tracey Holland CC-BY-NC-ND http://www.flickr.com/photos/traceyholland/3503793675
  • 11. By net_efekt CC-BY http://www.flickr.com/photos/wheatfields/3938462434 “Reproducibility: The open access to all relevant core elements of a publication “Reproducibility: The open access to all relevant core elements of a publication facilitates the verification and subsequent use of published content. The scientific facilitates the verification and subsequent use of published content. The scientific journal of the future requires the publication of research data and detailed journal of the future requires the publication of research data and detailed methodologies, including code, that form the basis of any publication.” methodologies, including code, that form the basis of any publication.” http://en.wikiversity.org/wiki/Wikiversity:Journal_of_the_future (v. 23:06, 19 October 2010) http://en.wikiversity.org/wiki/Wikiversity:Journal_of_the_future (v. 23:06, 19 October 2010)
  • 12. Cochrane Collaboration “All the existing primary research on a topic that meets certain criteria is “All the existing primary research on a topic that meets certain criteria is searched for and collated, and then assessed using stringent guidelines, to searched for and collated, and then assessed using stringent guidelines, to establish whether or not there is conclusive evidence about a specific establish whether or not there is conclusive evidence about a specific treatment. The reviews are updated regularly, ensuring that treatment treatment. The reviews are updated regularly, ensuring that treatment decisions can be based on the most up-to-date and reliable evidence.” decisions can be based on the most up-to-date and reliable evidence.” http://www.cochrane.org/cochrane-reviews http://www.cochrane.org/cochrane-reviews Image by Fimb CC-BY / http://www.flickr.com/photos/fimbrethil/2234680879/
  • 13. Challenges and solutions: Panton Principles Examples: (http://pantonprinciples.org/) Open Definition (http://www.opendefinition.org/) Open Access Definitions (http://www.arl.org/sparc/openaccess/) NZ GOAL (http://www.e.govt.nz/policy/nzgoal) Wiki Projects (http://en.wikiversity.org/, http://wikieducator.org/Main_Page, http://openwetware.org) Institutional mandates By landahlauts CC-BY-NC-SA http://www.flickr.com/photos/landahlauts/1356033909 Need to find consensus across different jurisdictions and institutions on interpretation of terms. Need to value the data
  • 14. Nat Torkington - Bjoern Brembs - Cameron Neylon - Daniel Mietchen Jean-Claude Bradley - Jonathan Eisen - Bill Cameron Bora Zivcovick - MietchenPiwowar Nat Torkington - Bjoern Brembs - Hooker - Neylon - Daniel Heather Jean-Claude Bradley Neil Saunders - Alistair Hooker - Martin Fenner –- Paul Nicholls Peter Murray-Rust - - Jonathan Eisen - Bill Young - Bora Zivcovick Heather Piwowar Bill Hooker - Ed Strafford Saunders Treolar - David McCandless - Chris McDowall Peter Murray-Rust - Neil - Andrew - Alistair Young - Martin Fenner – Paul Nicholls Claudia Koltzenburg Randall BrittenTreolar - CarverMcCandless --Chris McDowall Bill Hooker - Ed Strafford - Andrew - Julian David - Pia Waugh Steve Koch Claudia Koltzenburg Randall Britten - Julian Carver - Pia Waugh - Steve Koch FriendFeed - Twitter - Science3point0 - WikiEducator Creative Commons Aotearoa New Zealand - Govt NinjasWikiEducator FriendFeed - Twitter - Science3point0 - - Open Science – KiwiFoo Creative Commons Open Science Summit - - Govt Ninjas - Open Science – KiwiFoo SciFoo - Aotearoa New Zealand Science Online - Wikiversity SciFoo - Open Science Summit - Science Online - Wikiversity By Blueridgeskitties CC-BY-NC-SA By jporrier CC-BY-SA http://www.flickr.com/photos/blueridgekitties/4419380931 http://www.flickr.com/photos/jepoirrier/349580669