SlideShare a Scribd company logo

Large-scale integration of data and text

•Download as PPT, PDF•
•
Lars Juhl Jensen
Lars Juhl Jensen
Science
1 of 162
Lars Juhl Jensen Large-scale integration of data and text
Lars Juhl Jensen Large-scale integration of data and text
Ph.D.
sequence analysis
postdoc
staff scientist
protein networks
cellular signalling
group leader
cofounder
data integration
omics data
association networks
text mining
biomedical literature
electronic health records
association networks
guilt by association
STRING
Franceschini et al., Nucleic Acids Research, 2013
1100+ genomes
genomic context
gene fusion
Korbel et al., Nature Biotechnology, 2004
operons
Korbel et al., Nature Biotechnology, 2004
bidirectional promoters
Korbel et al., Nature Biotechnology, 2004
phylogenetic profiles
Korbel et al., Nature Biotechnology, 2004
a real example
Cell Cellulosomes Cellulose
experimental data
gene coexpression
physical interactions
Jensen & Bork, Science, 2008
genetic interactions
Beyer et al., Nature Reviews Genetics, 2007
curated knowledge
pathways
Letunic & Bork, Trends in Biochemical Sciences, 2008
many databases
different formats
different identifiers
variable quality
not comparable
not same species
hard work
(Ph.D. students)
quality scores
von Mering et al., Nucleic Acids Research, 2005
calibrate vs. gold standard
von Mering et al., Nucleic Acids Research, 2005
homology-based transfer
Franceschini et al., Nucleic Acids Research, 2013
missing most of the data
text mining
>10 km
too much to read
computer
as smart as a dog
teach it specific tricks
named entity recognition
comprehensive lexicon
cyclin dependent kinase 1
CDC2
flexible matching
cyclin dependent kinase 1
cyclin-dependent kinase 1
orthographic variation
CDC2
hCdc2
“black list”
SDS
augmented browsing
Reflect
browser add-on
real-time text mining
Pafilis, O’Donoghue, Jensen et al., Nature Biotechnology, 2009 O’Donoghue et al., Journal of Web Semantics, 2010
information extraction
co-mentioning
within documents
within paragraphs
within sentences
NLP Natural Language Processing
grammatical analysis
Gene and protein names Cue words for entity recognition Verbs for relation extraction [nxexpr The expression of [nxgene the cytochrome genes [nxpg CYC1 and CYC7]]] is controlled by [nxpg HAP1]
more precise
worse recall
related web resources
STITCH
STRING + 300k chemicals
stitch-db.org
COMPARTMENTS
compartments.jensenlab.org
TISSUES
tissues.jensenlab.org
DISEASES
diseases.jensenlab.org
general framework
curated knowledge
experimental data
text mining
computational predictions
common identifiers
quality scores
visualization
web resources
download files
why so many?
Swiss army knife syndrome
targeted resources
common infrastructure
medical data mining
Jensen et al., Nature Reviews Genetics, 2012
opt-out
opt-in
centralized registries
structured data
Jensen et al., Nature Reviews Genetics, 2012
14 years
6.2 million patients
119 million diagnoses
distributions
Jensen et al., submitted, 2014
diagnosis trajectories
Jensen et al., submitted, 2014
Jensen et al., submitted, 2014
complex trajectories
Jensen et al., submitted, 2014
confounding factors
correlation causation≠
electronic health records
unstructured data
Danish
busy doctors
pharmacovigilance
custom dictionaries
drugs
adverse drug events
typo rules
complex filters
Eriksson et al., Drug Safetey, 2014
new adverse drug reactions
Eriksson et al., Drug Safety, 2014 Drug substance ADE p-value Chlordiazepoxide Nystagmus 4.0e-8 Simvastatin Personality changes 8.4e-8 Dipyridamole Visual impairment 4.4e-4 Citalopram Psychosis 8.8e-4 Bendroflumethiazi de Apoplexy 8.5e-3
direct medical implications
Acknowledgments STRING/STITCH Christian von Mering Damian Szklarczyk Michael Kuhn Manuel Stark Samuel Chaffron Chris Creevey Jean Muller Tobias Doerks Philippe Julien Alexander Roth Milan Simonovic Jan Korbel Berend Snel Martijn Huynen Peer Bork Text mining Sune Frankild Jasmin Saric Evangelos Pafilis Kalliopi Tsafou Alberto Santos Janos Binder Heiko Horn Michael Kuhn Nigel Brown Reinhardt Schneider Sean O’ Donoghue EHR mining Anders Boeck Jensen Peter Bjødstrup Jensen Robert Eriksson Francisco S. Roque Henriette Schmock Marlene Dalgaard Massimo Andreatta Thomas Hansen Karen Søeby Søren Bredkjær Anders Juul Tudor Oprea Pope Moseley Thomas Werge Søren Brunak
Large-scale integration of data and text

Recommended

One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...
Lars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
Lars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text mining
Lars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
Lars Juhl Jensen
 
STRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningSTRING - Protein networks from data and text mining
STRING - Protein networks from data and text mining
Lars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
Lars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
Lars Juhl Jensen
 
Network biology
Network biologyNetwork biology
Network biology
Lars Juhl Jensen
 

Recommended

One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...One tagger, many uses - Illustrating the power of ontologies in named entity ...
One tagger, many uses - Illustrating the power of ontologies in named entity ...
Lars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
Lars Juhl Jensen
 
Large-scale data and text mining
Large-scale data and text miningLarge-scale data and text mining
Large-scale data and text mining
Lars Juhl Jensen
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
Lars Juhl Jensen
 
STRING - Protein networks from data and text mining
STRING - Protein networks from data and text miningSTRING - Protein networks from data and text mining
STRING - Protein networks from data and text mining
Lars Juhl Jensen
 
Network Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and textNetwork Biology: Large-scale integration of data and text
Network Biology: Large-scale integration of data and text
Lars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
Lars Juhl Jensen
 
Network biology
Network biologyNetwork biology
Network biology
Lars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
Lars Juhl Jensen
 
Introduction to STRING
Introduction to STRINGIntroduction to STRING
Introduction to STRING
Lars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
Lars Juhl Jensen
 
Data and Text Mining
Data and Text MiningData and Text Mining
Data and Text Mining
Lars Juhl Jensen
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text mining
Lars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
Lars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
Lars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
Lars Juhl Jensen
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network Biology
Lars Juhl Jensen
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
Lars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
Lars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
Lars Juhl Jensen
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and text
Lars Juhl Jensen
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
Lars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
Lars Juhl Jensen
 
Network biology - Large-scale integration of data and text
Network biology - Large-scale integration of data and textNetwork biology - Large-scale integration of data and text
Network biology - Large-scale integration of data and text
Lars Juhl Jensen
 
Medical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactionsMedical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactions
Lars Juhl Jensen
 
Protein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textProtein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and text
Lars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
Lars Juhl Jensen
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
Lars Juhl Jensen
 
Text-mining practical
Text-mining practicalText-mining practical
Text-mining practical
Lars Juhl Jensen
 
Mining the biomedical literature: Dictionary-based identification of proteins...
Mining the biomedical literature: Dictionary-based identification of proteins...Mining the biomedical literature: Dictionary-based identification of proteins...
Mining the biomedical literature: Dictionary-based identification of proteins...
Lars Juhl Jensen
 

More Related Content

What's hot

Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
Lars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
Lars Juhl Jensen
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
Lars Juhl Jensen
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
Lars Juhl Jensen
 

What's hot (20)

Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
Introduction to STRING
Introduction to STRINGIntroduction to STRING
Introduction to STRING
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
Data and Text Mining
Data and Text MiningData and Text Mining
Data and Text Mining
 
STRING: Protein networks from data and text mining
STRING: Protein networks from data and text miningSTRING: Protein networks from data and text mining
STRING: Protein networks from data and text mining
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
 
Cellular Network Biology
Cellular Network BiologyCellular Network Biology
Cellular Network Biology
 
Gene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and textGene association networks - Large-scale integration of data and text
Gene association networks - Large-scale integration of data and text
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 
STRING - Large-scale integration of data and text
STRING - Large-scale integration of data and textSTRING - Large-scale integration of data and text
STRING - Large-scale integration of data and text
 
Network Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and CytoscapeNetwork Biology: A crash course on STRING and Cytoscape
Network Biology: A crash course on STRING and Cytoscape
 
Network biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text miningNetwork biology: Large-scale data integration and text mining
Network biology: Large-scale data integration and text mining
 
Network biology - Large-scale integration of data and text
Network biology - Large-scale integration of data and textNetwork biology - Large-scale integration of data and text
Network biology - Large-scale integration of data and text
 
Medical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactionsMedical data and text mining - Linking diseases, drugs, and adverse reactions
Medical data and text mining - Linking diseases, drugs, and adverse reactions
 
Protein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and textProtein association networks: Large-scale integration of data and text
Protein association networks: Large-scale integration of data and text
 
Networks of proteins and diseases
Networks of proteins and diseasesNetworks of proteins and diseases
Networks of proteins and diseases
 
Gene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and textGene association networks: Large-scale integration of data and text
Gene association networks: Large-scale integration of data and text
 

Viewers also liked

Graphs > Discrete structures , Data Structures & Algorithums
Graphs > Discrete structures , Data Structures & AlgorithumsGraphs > Discrete structures , Data Structures & Algorithums
Graphs > Discrete structures , Data Structures & Algorithums
Ain-ul-Moiz Khawaja
 
Dijkstra's algorithm
Dijkstra's algorithmDijkstra's algorithm
Dijkstra's algorithm
gsp1294
 

Viewers also liked (17)

Text-mining practical
Text-mining practicalText-mining practical
Text-mining practical
 
Mining the biomedical literature: Dictionary-based identification of proteins...
Mining the biomedical literature: Dictionary-based identification of proteins...Mining the biomedical literature: Dictionary-based identification of proteins...
Mining the biomedical literature: Dictionary-based identification of proteins...
 
Medical Data Mining
Medical Data MiningMedical Data Mining
Medical Data Mining
 
Medical Data Mining
Medical Data MiningMedical Data Mining
Medical Data Mining
 
Text-mining practical
Text-mining practicalText-mining practical
Text-mining practical
 
STRING: Large-scale data and text mining
STRING: Large-scale data and text miningSTRING: Large-scale data and text mining
STRING: Large-scale data and text mining
 
130210107039 2130702
130210107039 2130702130210107039 2130702
130210107039 2130702
 
Graphs > Discrete structures , Data Structures & Algorithums
Graphs > Discrete structures , Data Structures & AlgorithumsGraphs > Discrete structures , Data Structures & Algorithums
Graphs > Discrete structures , Data Structures & Algorithums
 
5.1 greedy 03
5.1 greedy 035.1 greedy 03
5.1 greedy 03
 
Greedy minimum spanning tree- prim's algorithm
Greedy minimum spanning tree- prim's algorithmGreedy minimum spanning tree- prim's algorithm
Greedy minimum spanning tree- prim's algorithm
 
Direct linking loaders
Direct linking loadersDirect linking loaders
Direct linking loaders
 
Kruskal & Prim's Algorithm
Kruskal & Prim's AlgorithmKruskal & Prim's Algorithm
Kruskal & Prim's Algorithm
 
Shortest path (Dijkistra's Algorithm) & Spanning Tree (Prim's Algorithm)
Shortest path (Dijkistra's Algorithm) & Spanning Tree (Prim's Algorithm)Shortest path (Dijkistra's Algorithm) & Spanning Tree (Prim's Algorithm)
Shortest path (Dijkistra's Algorithm) & Spanning Tree (Prim's Algorithm)
 
Kruskal Algorithm
Kruskal AlgorithmKruskal Algorithm
Kruskal Algorithm
 
Dijkstra's algorithm
Dijkstra's algorithmDijkstra's algorithm
Dijkstra's algorithm
 
Prim's Algorithm on minimum spanning tree
Prim's Algorithm on minimum spanning treePrim's Algorithm on minimum spanning tree
Prim's Algorithm on minimum spanning tree
 
Dijkstra’S Algorithm
Dijkstra’S AlgorithmDijkstra’S Algorithm
Dijkstra’S Algorithm
 

Similar to Large-scale integration of data and text

Systems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemSystems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological system
Lars Juhl Jensen
 
Network biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text miningNetwork biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text mining
Lars Juhl Jensen
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
Lars Juhl Jensen
 
Medical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competenciesMedical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competencies
Lars Juhl Jensen
 

Similar to Large-scale integration of data and text (19)

The STRING database and related tools
The STRING database and related toolsThe STRING database and related tools
The STRING database and related tools
 
STRING - Modeling of biological systems through cross-species data integ...
STRING - Modeling of biological systems through cross-species data integ...STRING - Modeling of biological systems through cross-species data integ...
STRING - Modeling of biological systems through cross-species data integ...
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Large-scale integration of data and text
Large-scale integration of data and textLarge-scale integration of data and text
Large-scale integration of data and text
 
Large-scale biomedical data and text integration
Large-scale biomedical data and text integrationLarge-scale biomedical data and text integration
Large-scale biomedical data and text integration
 
Systems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological systemSystems biology: Bioinformatics on complete biological system
Systems biology: Bioinformatics on complete biological system
 
Systems biology: Bioinformatics on complete biological systems
Systems biology: Bioinformatics on complete biological systemsSystems biology: Bioinformatics on complete biological systems
Systems biology: Bioinformatics on complete biological systems
 
Cross-species data integration
Cross-species data integrationCross-species data integration
Cross-species data integration
 
Integration of heterogeneous data
Integration of heterogeneous dataIntegration of heterogeneous data
Integration of heterogeneous data
 
The STRING database
The STRING databaseThe STRING database
The STRING database
 
Disease systems biology
Disease systems biologyDisease systems biology
Disease systems biology
 
Disease Systems Biology
Disease Systems BiologyDisease Systems Biology
Disease Systems Biology
 
STRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous dataSTRING & STITCH : Network integration of heterogeneous data
STRING & STITCH : Network integration of heterogeneous data
 
Data integration and functional association networks
Data integration and functional association networksData integration and functional association networks
Data integration and functional association networks
 
Network biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text miningNetwork biology: Large-scale biomedical data and text mining
Network biology: Large-scale biomedical data and text mining
 
Network biology: Large-scale data and text mining
Network biology: Large-scale data and text miningNetwork biology: Large-scale data and text mining
Network biology: Large-scale data and text mining
 
Medical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competenciesMedical bioinformatics: Current trends, industry needs, and core competencies
Medical bioinformatics: Current trends, industry needs, and core competencies
 
Integration of diverse large-scale datasets
Integration of diverse large-scale datasetsIntegration of diverse large-scale datasets
Integration of diverse large-scale datasets
 

More from Lars Juhl Jensen

More from Lars Juhl Jensen (20)

One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...One tagger, many uses: Illustrating the power of dictionary-based named entit...
One tagger, many uses: Illustrating the power of dictionary-based named entit...
 
One tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicineOne tagger, many uses: Simple text-mining strategies for biomedicine
One tagger, many uses: Simple text-mining strategies for biomedicine
 
Extract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotationExtract 2.0: Text-mining-assisted interactive annotation
Extract 2.0: Text-mining-assisted interactive annotation
 
Network visualization: A crash course on using Cytoscape
Network visualization: A crash course on using CytoscapeNetwork visualization: A crash course on using Cytoscape
Network visualization: A crash course on using Cytoscape
 
Biomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured textBiomedical text mining: Automatic processing of unstructured text
Biomedical text mining: Automatic processing of unstructured text
 
Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...Medical network analysis: Linking diseases and genes through data and text mi...
Medical network analysis: Linking diseases and genes through data and text mi...
 
Cellular networks
Cellular networksCellular networks
Cellular networks
 
Cellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and textCellular Network Biology: Large-scale integration of data and text
Cellular Network Biology: Large-scale integration of data and text
 
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
Statistics on big biomedical data: Methods and pitfalls when analyzing high-t...
 
STRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous dataSTRING & related databases: Large-scale integration of heterogeneous data
STRING & related databases: Large-scale integration of heterogeneous data
 
Tagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognitionTagger: Rapid dictionary-based named entity recognition
Tagger: Rapid dictionary-based named entity recognition
 
Medical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactionsMedical text mining: Linking diseases, drugs, and adverse reactions
Medical text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Network biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and textNetwork biology: Large-scale integration of data and text
Network biology: Large-scale integration of data and text
 
Biomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritizationBiomarker bioinformatics: Network-based candidate prioritization
Biomarker bioinformatics: Network-based candidate prioritization
 
The Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literatureThe Art of Counting: Scoring and ranking co-occurrences in literature
The Art of Counting: Scoring and ranking co-occurrences in literature
 
Text-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networksText-mining-based retrieval of protein networks
Text-mining-based retrieval of protein networks
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 
Medical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactionsMedical data and text mining: Linking diseases, drugs, and adverse reactions
Medical data and text mining: Linking diseases, drugs, and adverse reactions
 

Recently uploaded

+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
?#DUbAI#??##{{(☎️+971_581248768%)**%*]'#abortion pills for sale in dubai@
 
development of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virusdevelopment of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virus
NazaninKarimi6
 
Asymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 b
Asymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 bAsymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 b
Asymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 b
Sérgio Sacani
 
The Mariana Trench remarkable geological features on Earth.pptx
The Mariana Trench remarkable geological features on Earth.pptxThe Mariana Trench remarkable geological features on Earth.pptx
The Mariana Trench remarkable geological features on Earth.pptx
seri bangash
 
CYTOGENETIC MAP................ ppt.pptx
CYTOGENETIC MAP................ ppt.pptxCYTOGENETIC MAP................ ppt.pptx
CYTOGENETIC MAP................ ppt.pptx
Silpa
 
Module for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learningModule for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learning
levieagacer
 
Porella : features, morphology, anatomy, reproduction etc.
Porella : features, morphology, anatomy, reproduction etc.Porella : features, morphology, anatomy, reproduction etc.
Porella : features, morphology, anatomy, reproduction etc.
Silpa
 
biology HL practice questions IB BIOLOGY
biology HL practice questions IB BIOLOGYbiology HL practice questions IB BIOLOGY
biology HL practice questions IB BIOLOGY
1301aanya
 

Recently uploaded (20)

Zoology 5th semester notes( Sumit_yadav).pdf
Zoology 5th semester notes( Sumit_yadav).pdfZoology 5th semester notes( Sumit_yadav).pdf
Zoology 5th semester notes( Sumit_yadav).pdf
 
300003-World Science Day For Peace And Development.pptx
300003-World Science Day For Peace And Development.pptx300003-World Science Day For Peace And Development.pptx
300003-World Science Day For Peace And Development.pptx
 
+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
 
development of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virusdevelopment of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virus
 
Genome sequencing,shotgun sequencing.pptx
Genome sequencing,shotgun sequencing.pptxGenome sequencing,shotgun sequencing.pptx
Genome sequencing,shotgun sequencing.pptx
 
Molecular markers- RFLP, RAPD, AFLP, SNP etc.
Molecular markers- RFLP, RAPD, AFLP, SNP etc.Molecular markers- RFLP, RAPD, AFLP, SNP etc.
Molecular markers- RFLP, RAPD, AFLP, SNP etc.
 
Asymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 b
Asymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 bAsymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 b
Asymmetry in the atmosphere of the ultra-hot Jupiter WASP-76 b
 
PSYCHOSOCIAL NEEDS. in nursing II sem pptx
PSYCHOSOCIAL NEEDS. in nursing II sem pptxPSYCHOSOCIAL NEEDS. in nursing II sem pptx
PSYCHOSOCIAL NEEDS. in nursing II sem pptx
 
The Mariana Trench remarkable geological features on Earth.pptx
The Mariana Trench remarkable geological features on Earth.pptxThe Mariana Trench remarkable geological features on Earth.pptx
The Mariana Trench remarkable geological features on Earth.pptx
 
CYTOGENETIC MAP................ ppt.pptx
CYTOGENETIC MAP................ ppt.pptxCYTOGENETIC MAP................ ppt.pptx
CYTOGENETIC MAP................ ppt.pptx
 
Site Acceptance Test .
Site Acceptance Test .Site Acceptance Test .
Site Acceptance Test .
 
Module for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learningModule for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learning
 
Role of AI in seed science Predictive modelling and Beyond.pptx
Role of AI in seed science Predictive modelling and Beyond.pptxRole of AI in seed science Predictive modelling and Beyond.pptx
Role of AI in seed science Predictive modelling and Beyond.pptx
 
Clean In Place(CIP).pptx .
Clean In Place(CIP).pptx .Clean In Place(CIP).pptx .
Clean In Place(CIP).pptx .
 
Porella : features, morphology, anatomy, reproduction etc.
Porella : features, morphology, anatomy, reproduction etc.Porella : features, morphology, anatomy, reproduction etc.
Porella : features, morphology, anatomy, reproduction etc.
 
Factory Acceptance Test( FAT).pptx .
Factory Acceptance Test( FAT).pptx .Factory Acceptance Test( FAT).pptx .
Factory Acceptance Test( FAT).pptx .
 
Dr. E. Muralinath_ Blood indices_clinical aspects
Dr. E. Muralinath_ Blood indices_clinical aspectsDr. E. Muralinath_ Blood indices_clinical aspects
Dr. E. Muralinath_ Blood indices_clinical aspects
 
biology HL practice questions IB BIOLOGY
biology HL practice questions IB BIOLOGYbiology HL practice questions IB BIOLOGY
biology HL practice questions IB BIOLOGY
 
Use of mutants in understanding seedling development.pptx
Use of mutants in understanding seedling development.pptxUse of mutants in understanding seedling development.pptx
Use of mutants in understanding seedling development.pptx
 
Proteomics: types, protein profiling steps etc.
Proteomics: types, protein profiling steps etc.Proteomics: types, protein profiling steps etc.
Proteomics: types, protein profiling steps etc.
 

Large-scale integration of data and text