EVE 161 Lecture 5

1. Lecture 5:
EVE 161:
Microbial Phylogenomics
!
Lecture #5:
Era II: Culture Independent rRNA
!
UC Davis, Winter 2014
Instructor: Jonathan Eisen
Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!1

2. Where we are going and where we have been
• Previous lecture:
! 4. Modern view of Tree of Life
• Current Lecture:
! 5. Era II: rRNA from environment
• Next Lecture:
! 6: Era II: PCR and major groups
Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!2

3. • Short Quiz on Thursday in Class on a paper
!
• An archaeal origin of eukaryotes supports only two
primary domains of life
• http://www.nature.com/nature/journal/v504/n7479/full/
nature12779.html
• Read paper by Thursday
• And then a take home assignment on that same paper
will be given out in class Thursday
Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!3

4. Three papers for today
Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!4

5. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!5

6. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!6

7. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!7

8. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!8

9. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!9

10. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!10

11. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!11

12. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!12

13. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!13

14. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!14

15. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!15

16. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!16

17. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!17

18. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!18

19. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!19

20. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!20

21. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!21

22. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!22

23. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!23

24. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!24

25. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!25

26. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!26

27. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!27

28. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!28

29. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!29

30. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!30

31. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!31

32. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!32

33. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!33

34. `
Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!34

35. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!35

36. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!36

37. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!37

38. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!38

39. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!39

40. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!40

41. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!41

42. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!42

43. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!43

44. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!44

45. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!45

46. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!46

47. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!47

48. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!48

49. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!49

50. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!50

51. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!51

52. Slides for UC Davis EVE161 Course Taught by Jonathan Eisen Winter 2014
!52