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CERTAIN INVESTIGATIONS ON DIAGNOSIS
OF LUNG CANCER USING NOVEL
ALGORITHM
P.Surendar,
Reg.No: 17134691318
Research Scholar,
Anna University, Chennai.
12/22/2022 1
Supervisor
Dr.M.Ponnibala
Prof/BME
Velalar College of
Engineering and
Technology, Thindal
Contents
1. Introduction
2. Literature Review
3. Research Gap
4. Objectives
5. Proposed Work
i. Fast Non Local Mean Filter (FNLM)
ii. Masi entrophy based Multilevel thresholding using Salp
Swarm Algorithm(MasiEMT-SSA)
iii. Feature Extraction using Gray level Run Length
Matrix(GLRLM)
iv. Feature Selection using Binary Grasshopper Optimization
Algorithm)
v. Hybrid Classifier using Deep Neural Network with adaptive
sine cosine crow search) 2
Contents
6. Results & Conclusion
7. Future Work
8. References
9. List of Publications
12/22/2022 3
Introduction
Medical Image Processing
Image Modalities
Lung Tumor
Tumor Classification
Deep Learning Techniques
12/22/2022 4
Medical Image Processing
Image processing
Method to perform few operations on an image,
in order to get an enhanced image or to extract
some information from it.
Medical imaging processing
Creates visual representations of interior parts of
a body.
Introduction
12/22/2022 5
Contd…
To reveal internal structures of organs hidden by the
skin and bones, as well as to diagnose and treat
diseases.
Also creates a database of normal anatomy and
physiology to identify abnormalities
Introduction
12/22/2022 6
Contd…
Steps in medical image processing:
Preprocessing an image to reduce noise and blur- filtering
Identifying structures within the image - segmentation
Extracting useful information from the image – feature
extraction
Preparing the image for visualization – enhancement
Categorizing the images based on its features - Classification
and Clustering
Introduction
12/22/2022 7
Image Modalities
Modalities used for visualizing different structures and
tissues of the human body.
• X – Ray
• Computed Tomography (CT)
• Magnetic Resonance Imaging (MRI)
• Positron Emission Tomography (PET) and
• Ultrasound images
Introduction
12/22/2022 8
Image Modalities
• X – Ray
– Produce images of the structures inside human body,
especially bones.
– Used to diagnose the bone fractures; arthritis; infections.
• Computed Tomography (CT)
– CT scans use a series of x-rays to create cross-sections of
the inside of the body, including bones, blood vessels, and
soft tissues.
– Used to diagnose bone fractures; tumors; vascular disease;
heart disease; infections; used to guide biopsies.
Introduction
12/22/2022 9
Image Modalities
• Magnetic Resonance Imaging (MRI)
– MRIs use magnetic fields and radio waves to create
detailed images of organs and tissues in the body.
– Used to diagnose stoke; spinal cord disorders; tumors;
blood vessel issues; joint or tendon injuries.
Introduction
12/22/2022 10
Image Modalities
• Positron Emission Tomography (PET)
– Use radioactive drugs and a scanning machine to show
how the tissues and organs are functioning.
– Used to diagnose heart disease; coronary artery disease;
seizures; epilepsy;
• Ultrasound images
– Ultrasound uses high-frequency sound waves to produce
images of organs and structures within the body.
– Used to diagnose gallbladder disease; breast lumps;
genital/prostate issues; joint inflammation.
Introduction
12/22/2022 11
Filtering
• Medical images are generated by electronic
equipments - presence of noise is inevitable.
• To suppress or remove the noises in an image.
• Filters modify value of pixels by considering the
values of neighboring pixels.
Introduction
12/22/2022 12
Image segmentation
• Process of partitioning an image into number of
regions of similar features or segments
Introduction
CT Lung Image and Segmented Image
12/22/2022 13
Image enhancement
• Improve the visibility and perceptibility of specific
regions in an image for analysis.
• Enhancing the contrast among adjacent regions
• Simplifying the image by selective smoothing
Introduction
12/22/2022 14
Lung Tumor
• The tumor is uncontrolled growth of cells in any part of
the body.
• A lung tumor can be either:
– benign or
– malignant
• Not all tumors are cancerous
• Malignant tumor
– very harmful and it spreads to other part of the body.
– have a heterogeneous structure and contain active
cells.
Introduction
12/22/2022 15
Contd…
• Benign tumor
– has uniformity in structure and does not contain cancer
cells
– not much dangerous and do not spread to other part of
the body.
Introduction
12/22/2022 16
Contd…
• Tumor stages can be identified based on
– tumor size, growth rate or spreading area.
• Staging is a way to describe
– where the tumor is located,
– where it has spread, and whether it is affecting other
parts of the body,
Introduction
12/22/2022 17
Tumor Classification
• Tumor classification extracts information from the
segmented tumor region
• Also classifies healthy and tumor tissues for a large
database of medical images.
• Classification algorithm
– Helps to detect and classify the tumors as either benign
or malignant for early diagnosis.
Introduction
12/22/2022 18
Deep Learning
• Rapid growth in medical images and modalities requires
extensive efforts by medical expert for analysis.
– Subjective, prone to human error and may have large
variations across different expert.
Introduction
12/22/2022 19
Contd…
• Convolutional Neural Networks (CNNs) are biologically
inspired variants of Multi-Layer Perceptrons (MLPs).
• They tend to recognize visual patterns, directly from raw
image pixels.
• DNN is an increase in the number of hidden nodes in a
simple convolution neural network.
Introduction
12/22/2022 20
Contd…
DNN consists of three important layers:
1. Input layer
2. Hidden layer
3. Output layer
Introduction
12/22/2022 21
Contd…
1. Input Layer
• This input data specifies the width, height, and number
of channels.
• Typically, the number of channels in CT image is 2 for
each pixel, for color images it is 3 as they are RGB images.
Introduction
12/22/2022 22
Literature Review
Literature Review
Author Title Classifier used Accuracy
Supria Suresh et al.
(2019) Journal of
King Saud
University -
Computer and
Information
Sciences
NROI based feature
learning for automated
tumor stage classification
of pulmonary lung
nodules using deep
convolutional neural
networks .
DCNN 97.80
Lakshmanaprabu
, et al (2019)
Future
Generation
Computer
Systems
Optimal deep learning
model for classification
of lung cancer on ct
images, Future Gener
Modified
Gravitational
Search
Algorithm
94.56
12/22/2022 23
Contd…
Literature Review
Author Title Classifier used Acccuracy
A.O.de Carvalho
Filho et al. (2018)
Classification of patterns of
benignity and malignancy based
on ct using topology-based
phylogenetic diversity index
and convolutional neural
network, Pattern Recognition
CNN 92.63
Y. Xie et al.
(2018)
Information
Fusion
Fusing texture, shape and deep
model-learned information at
decision level for automated
classification of lung nodules on
chest CT
FUSE-Texture
shape and
data model
89.53
12/22/2022 24
Contd…
Literature Review
Author Title Classifier used Accuracy
W. Shen et
al. (2015)
Information
Processing
in Medical
Imaging;
Springer
Multi-scale
convolutional neural
networks for lung
nodule classification,
in: Information
Processing in Medical
Imaging
SVM,RF 86.84
Y. Xie et al.
(2019)
MED
IMAGE
ANALYSIS
Semi-supervised
adversarial model for
benign–malignant
lung nodule
classification on chest
CT
DCNN 92.53
12/22/2022 25
Contd…
Literature Review
Author Title Classifier used Accuracy
S.R. Sannasi
Chakravarthy et
al. (2019) Asian
Pacific journal of
cancer
prevention:
APJCP
Lung cancer detection
using probabilistic
neural network with
modified crow-search
algorithm
PNN 90
12/22/2022 26
RESEARCH GAP
• Edge detection and over segmentation is considered as a
research problem in the medical image segmentation.
• Luminance and maintaining structure similarity are the
challenging task in image enhancement.
• The traditional classification algorithms requires a separate
feature extraction model and the Performance gets low for
large volume of dataset.
12/22/2022 27
OBJECTIVES
• To find the lung cancer at an early stage
• To present CAD system based hybrid DNN with adaptive
optimization algorithm
• To get better classification accuracy by extracting the
optimal features under the efficient feature extraction and
feature selection approaches.
• To minimize the error during classification process
• To minimize the execution time
12/22/2022 28
Simulation Setup
Simulations are performed using
– GPU architecture with MATLAB R2015a.
– Intel Core i3 II generation processor based 4 GB RAM
computer
Dataset
– Lung Image Database Consortium (LIDC) and Image
Database Resource Initiative (IDRI)
12/22/2022 29
Proposed Method
12/22/2022 30
Testing Image
Preprocessing using
FNLM filter
Segmentation by
MasiEMT-SSA
Feature extraction by
GLRLM
Feature selection using
BGOA
Classification using
DNN-ASCCS
Cancerous
Non-Cancerous
Trained Lung
Cancer Images
Preprocessing using
FNLM filter
Segmentation by
MasiEMT-SSA
Feature extraction by
GLRLM
Feature selection using
BGOA
Training Phase
Testing Phase
Fast Non Local Mean Filter
FNLM is applied to eliminate the noise from the
images.
neighbourhood filter that mines an average value of
neighbouring pixels to a central pixel
PHASE -I
12/22/2022 31
Fast Non Local Mean Filter
For the NLM, the weights are calculated which only
use pixel information to measure the similarity
between a central region patch and its neighboring
patches.
PHASE -I
12/22/2022 32
Fast Non Local Mean Filter
The proposed method is to combine the advantages
of the Non Local Means algorithm and the bilateral
filter with added texture information as weights.
PHASE -I
12/22/2022 33
Fast Non Local Mean Filter
12/22/2022 34
According to the structural similarity of
neighbouring pixels, the weights are computed.
The high weight is assigned once the similarity of
gray-level in the neighbouring pixel is high.
The FNLM filter is represented as:



I
n
n
I
n
m
w
m
I
NL )
(
)
,
(
)
(
]
[
Fast Non Local Mean Filter
12/22/2022 35






n
d
n
I
m
I
G
e
m
Z
n
m
w
2
2
2
)
(
)
(
)
(
)
(
1
)
,
(




Masi entropy based Segmentation
Segmentation is a procedure of dividing the image
into sub-regions.
For an image segmentation process, a multilevel
thresholding (MT) method is established that uses
the Masi entropy as an impartial function.
12/22/2022 36
Masi entropy based Segmentation
The complexity of MT is growths quickly with
growing number of thresholds. Therefore, the SSA is
employed to adjust the threshold process and to
decrease the computational complexity (CC) involved
in MT.
PHASE -I
12/22/2022 37
Masi entropy based Segmentation
The key motivation of SSA mimics the crawling
behaviour of salps. It is capable to enhance the initial
random solutions efficiently and converge in the
direction of the best value.
PHASE -I
12/22/2022 38
Masi entropy based Segmentation
the population is divided into two groups such as
leaders and followers.
In the SSA, the potential solutions are signified by a
salps.
The fitness of each salp is estimated through the
Masientropy function
PHASE -I
12/22/2022 39
Masi entropy based Segmentation
The locations of the salps are the thresholds. By
randomly initializing the locations of the salps, the
algorithm starts in the search space as:
PHASE -I
12/22/2022 40
 
 
lb
lb
ub
noS
rand
round 


 
)
(
.
dim
,
Feature Extraction-Grey Level Run Length
Matrix (GLRLM)
The GLRLM approach is utilized to extracting the
higher order numerical texture information.
By re-quantization prior to the growth of the matrix,
the quantity of gray levels is reduced in the image.
PHASE -I
12/22/2022 41
Feature Extraction- GLRLM
The features of Run Length Nonuniformity (RLN), Long Run High
Gray-Level Emphasis (LRHGLE), Low Gray-Level Run Emphasis
(LGLRE), Long Run Emphasis (LRE), Gray-Level Nonuniformity
(GLN), Run Percentage (RP), Long Run Low Gray-Level Emphasis
(LRLGLE),High Gray-Level Run Emphasis (HGLRE), Short Run Low
Gray-Level Emphasis (SRLGLE), Short Run High Gray-Level
Emphasis (SRHGLE), and Short Run Emphasis (SRE) are extracted
using the GLRLM approach.
PHASE -I
12/22/2022 42
Feature Extraction-GLRLM
• The GLRLM is established as:
PHASE -I
12/22/2022 43
  max
0
,
0
,
)
,
(
)
( K
v
N
u
v
u
r
K r 



 

FEATURE SELECTION-BGOA
Under the specific conditions, the Grasshoppers are
considered a pest. The key feature of these insects is
connected to their movement. In a larval state, its
movement is slow as compared to the huge and
rapid movements of the adults.
PHASE -I
12/22/2022 44
Classification-DNN-ASCCS
The structure of DNN contains three layer such as
input layer, output layer and hidden layers .
The DNN is constructed with two hidden layers by
the desired weight
PHASE -I
12/22/2022 45
DNN Structure
PHASE -I
12/22/2022 46
Softmax regression
Input
Layer
Hidden
Layer 1
Hidden
Layer 2
Output
Layer
Classification-DNN-ASCCS
The combination of sine cosine algorithm and crow
search algorithm is named as SCCS. The benefits of
the two algorithms are considered and use to design
an effective hybrid algorithm which can perform very
well compared to other algorithms.
PHASE -I
12/22/2022 47
Classification-DNN-ASCCS
In this work, adaptive SCCS is termed as ASCCS is
introduced for weight updation of DNN. Initially, the
concept behind the CSA is considered in the ASCCS
algorithm
PHASE -I
12/22/2022 48
Classification-DNN-ASCCS
The last layer of DNN is a softmax classifier and its
main aim is to categorize the learned features from
DNN. Softmax is used as the activation function in
this classifier.
PHASE -I
12/22/2022 49
Filter Output Comparison
12/22/2022 50
(a) (b) (c) (d)
Input Image FNLM Filter Robust bilateral filter Rolling guidance filter
Image Segmentation Comparison
PHASE -I
12/22/2022 51
(a) (b) (c) (d)
a)pre-processed images, (b) segmentation using MasiEMT-SSA, (c)
segmentation using masi entropy (d) segmentation using region growing
Comparison of Accuracy Performance
PHASE -I
12/22/2022 52
Feature Selection approaches
PHASE -I
12/22/2022 53
Lung cancer output images (a) input image (b) filtered
image (c) segmented lung (d) segmented nodule
12/22/2022 54
Input image Filtered image Segmented lung Segmented nodule Types of cancer
Normal
Benign
Malignant
Normal
Malignant
Malignant
Malignant
Normal
Normal
(a) (b) (c) (d)
Benign
Confusion Matrix
12/22/2022 55
Parameters
The output is either tumor (+ve) or normal (-ve).
• True positive (TP): Prediction is +ve and tumor image
classified as tumor
• True negative (TN): Prediction is -ve and non tumor image
classified as normal
• False positive (FP): Prediction is +ve and tumor image
classified as normal image
• False negative (FN): Prediction is -ve and non tumor
classified as tumor image.
Performance Metrics
12/22/2022 56
Contd…
1. Accuracy
• the closeness of a measured value to an actual value.
Performance Metrics
12/22/2022 57
Contd…
Accuracy of the proposed lung tumor detection and
classification using DCNN is calculated for:
Three architectures with 128 ×128, 192×192 and
256 × 256 patch sizes.
Performance Metrics
12/22/2022 58
Contd…
2. Sensitivity
It is predicting the positive values to actual positive values.
Performance Metrics
12/22/2022 59
FN
TP
TP
y
Sensitivit


Contd…
• 3. Specificity:
It is a measurement of predicting actual negatives as
negative.
Performance Metrics
12/22/2022 60
FP
TN
TN
y
Specificit


Contd…
The CT images are taken from LIDC (IDRI) and databases.
The dataset consists of 1018 CT scans of 1010 patients.
Here 70 % of the dataset is considered for a training the model and
30% is used for a test set. pixel size ranges between 0.48 and 0.72 mm,
the thickness of each slice varies from 1.25 to 2.5 mm range.
A sample image has been given as an input to the trained model.
This model is able to classify the given image as normal, benign or
malignant.
Performance Metrics
12/22/2022 61
Accuracy Performance
12/22/2022 62
Classifier
Comparison of Sensitivity
12/22/2022 63
Classifier
Specificity Evaluation
12/22/2022 64
Classifier
True Positive Rate Performance
12/22/2022 65
Classifier
False Positive Rate Performance
PHASE -I
12/22/2022 66
Classifier
Accuracies of different Features
12/22/2022 67
Comparison of Accuracy
PHASE -I
12/22/2022 68
Testing and Training Accuracy
PHASE -I
12/22/2022 69
Comparison of Proposed Approach
PHASE -I
12/22/2022 70
Parameters Acc (%) Sensitivity (%) Specificity (%) TPR FPR
DNN-ASCCS
(proposed)
99.17 99.3 99.03 99.3 0.96
AdaBoost 94.77 93.3 95.7 93.3 4.29
KNN 95.5 94.3 96.3 94.3 3.68
NB 96.3 95.3 97.03 95.3 2.96
Bagging 97.11 96.3 97.64 96.3 2.35
SVM 97.88 97.28 98.28 97.28 1.72
Computation Time
PHASE -I
12/22/2022 71
Processing
Steps
FNLM
Filter
(sec)
MasiEMT-SSA
Segmentation
(sec)
GLRLM
Feature
Extraction
(sec)
BGOA
Feature
Selection
(sec)
Classification
(sec)
Total
Time
(sec)
DNN 1.83 7.14 32.61 50.75 42.23 134.56
DNN-
ASCCS
1.83 7.14 32.61 50.75 15.67 108
Comparison of different state of art
methods
PHASE -I
12/22/2022 72
Authors Classifiers Datasets Accuracy (%)
DNN-ASCCS (proposed) DNN-ASCCS LIDC-IDRI 99.17
Suresh [33] DCNN LIDC-IDRI 97.80
Lakshmanaprabu [35] MGSA LIDC-IDRI 94.56
de Carvalho Filho et al.
[36]
CNN LIDC-IDRI 92.63
Xie et al [37] Fuse-TSD LIDC-IDRI 89.53
Shen et al [38] SVM, RF LIDC-IDRI 86.84
Xie et al [39] DCNN LIDC-IDRI 92.53
Harikumar and Sannasi
[40]
PNN LIDC-IDRI 90
Conclusion
Lung cancer is one of the leading cause of cancer mortality
worldwide, with the lowest survival rates after diagnosis.
The early detection of lung tumor helps to increase the
chances of improving patient survival.
Medical image form a vital component of a patient’s health
record and it requires manipulation, processing and
handling of data by computers.
Hence medical data is also a type of bigdata and its
analysis become complex.
In-order to solve these issues DNN-ASCCS classifies the lung
tumor from CT images with high Accuracy.
12/22/2022 73
Results and Conclusion
FUTURE WORK
In the future, the proposed approach will be extended by the
diagnosis of lung cancer using advanced methods and algorithms
in less time complexity.
12/22/2022 74
MAJOR REFERENCES
1. Arulmurugan, R., and H. Anandakumar. "Early detection of lung cancer using wavelet
feature descriptor and feed forward back propagation neural networks classifier."
In Computational Vision and Bio Inspired Computing, pp. 103-110. Springer, Cham, 2018.
2. Thabsheera, AP Ayshath, T. M. Thasleema, and R. Rajesh. "Lung cancer detection using CT
scan images: A review on various image processing techniques." In Data Analytics and
Learning, pp. 413-419. Springer, Singapore, 2019.
3. Yu, Haixin, Zhong Guan, Katarina Cuk, Yan Zhang, and Hermann Brenner. "Circulating
MicroRNA Biomarkers for Lung Cancer Detection in East Asian Populations." Cancers 11,
no. 3 (2019): 415.
4. Bhattacharjee, Ananya, and SwanirbharMajumder. "Automated Computer-Aided Lung
Cancer Detection System." In Advances in Communication, Devices and Networking, pp.
425-433. Springer, Singapore, 2019.
5. Adir, Yochai, ShovalTirman, Shirley Abramovitch, Cynthia Botbol, Aviv Lutaty,
TaliScheinmann, EyalDavidovits et al. "Novel non-invasive early detection of lung cancer
using liquid immunobiopsy metabolic activity profiles." Cancer Immunology,
Immunotherapy 67, no. 7 (2018): 1135-1146.
12/22/2022 75
Contd…
6. Zhang, Yu-Dong &Satapathy, Suresh & Guttery, David &Gorriz, Juan & Wang, Shuihua.
(2021). Improved Breast Cancer Classification Through Combining Graph
Convolutional Network and Convolutional Neural Network. Information Processing
and Management. 58. 102439. 10.1016/j.ipm.2020.102439.
7. Wang, Shuihua&Govindaraj, Vishnuvarthanan&Gorriz, Juan & Zhang, Xin & Zhang,
Yu-Dong. (2020). Covid-19 Classification by FGCNet with Deep Feature Fusion from
Graph Convolutional Network and Convolutional Neural Network. Information
Fusion. 10.1016/j.inffus.2020.10.004.
8. Suresh, Supriya & Mohan, Subaji. (2019). NROI based feature learning for Automated
Tumor Stage Classification of pulmonary lung nodules using Deep Convolutional
Neural Networks. Journal of King Saud University - Computer and Information
Sciences. 10.1016/j.jksuci.2019.11.013
9. Lakshmanaprabu, S., Mohanty, S. N., Shankar, K., Arunkumar, N., & Ramirez, G.
(2019). Optimal deep learning model for classification of lung cancer on ct images.
Future Generation Computer Systems, 92 , 374–382.
MAJOR REFERENCES
12/22/2022 76
Contd…
10. de Carvalho Filho, A. O., Silva, A. C., de Paiva, A. C., Nunes, R. A., & Gattass, M.
(2018). Classification of patterns of benignity and malignancy based on ct using
topology-based phylogenetic diversity index and convolutional neural network.
Pattern Recognition, 81 , 200–212
11. Xie, Y., Zhang, J., Xia, Y., Fulham, M., & Zhang, Y. (2018). Fusing texture, shape and
deep model-learned information at decision level for automated classification of lung
nodules on chest ct. Information Fusion, 42 , 102–110
12. Shen, W.; Zhou, M.; Yang, F.; Yang, C.Y.; Tian, J. Multi-scale Convolutional Neural
Networks for Lung Nodule Classification. In Information Processing in Medical
Imaging; Springer: Cham, Switzerland, 2015; pp. 588–599.
13. Y. Xie, J. Zhang, Y. Xia, Semi-supervised adversarial model for benign–malignant lung
nodule classification on chest CT, MED IMAGE ANAL, 57 (2019) 237-248.
14. SannasiChakravarthy, S. R., and HarikumarRajaguru. "Lung Cancer Detection using
Probabilistic Neural Network with modified Crow-Search Algorithm." Asian Pacific
journal of cancer prevention: APJCP 20, no. 7 (2019): 2159.
MAJOR REFERENCES
12/22/2022 77
Published
• Surendar.P & Ponnibala.M 2021, ‘Diagnosis of Lung Cancer Using
Hybrid Deep Neural Network with Adaptive Sine Cosine Crow
Search Algorithm’, This research paper was accepted in Journal of
Computational science, Elsevier Netherlands, with DOI:
10.1016/j.jocs.2021.101374, Print ISSN Number : ISSN: 1877-
7503. (Updated Anna University List of Journals (Annexure-I).
12/22/2022 78

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Novel Algorithm Classifies Lung Cancer Using Deep Learning

  • 1. CERTAIN INVESTIGATIONS ON DIAGNOSIS OF LUNG CANCER USING NOVEL ALGORITHM P.Surendar, Reg.No: 17134691318 Research Scholar, Anna University, Chennai. 12/22/2022 1 Supervisor Dr.M.Ponnibala Prof/BME Velalar College of Engineering and Technology, Thindal
  • 2. Contents 1. Introduction 2. Literature Review 3. Research Gap 4. Objectives 5. Proposed Work i. Fast Non Local Mean Filter (FNLM) ii. Masi entrophy based Multilevel thresholding using Salp Swarm Algorithm(MasiEMT-SSA) iii. Feature Extraction using Gray level Run Length Matrix(GLRLM) iv. Feature Selection using Binary Grasshopper Optimization Algorithm) v. Hybrid Classifier using Deep Neural Network with adaptive sine cosine crow search) 2
  • 3. Contents 6. Results & Conclusion 7. Future Work 8. References 9. List of Publications 12/22/2022 3
  • 4. Introduction Medical Image Processing Image Modalities Lung Tumor Tumor Classification Deep Learning Techniques 12/22/2022 4
  • 5. Medical Image Processing Image processing Method to perform few operations on an image, in order to get an enhanced image or to extract some information from it. Medical imaging processing Creates visual representations of interior parts of a body. Introduction 12/22/2022 5
  • 6. Contd… To reveal internal structures of organs hidden by the skin and bones, as well as to diagnose and treat diseases. Also creates a database of normal anatomy and physiology to identify abnormalities Introduction 12/22/2022 6
  • 7. Contd… Steps in medical image processing: Preprocessing an image to reduce noise and blur- filtering Identifying structures within the image - segmentation Extracting useful information from the image – feature extraction Preparing the image for visualization – enhancement Categorizing the images based on its features - Classification and Clustering Introduction 12/22/2022 7
  • 8. Image Modalities Modalities used for visualizing different structures and tissues of the human body. • X – Ray • Computed Tomography (CT) • Magnetic Resonance Imaging (MRI) • Positron Emission Tomography (PET) and • Ultrasound images Introduction 12/22/2022 8
  • 9. Image Modalities • X – Ray – Produce images of the structures inside human body, especially bones. – Used to diagnose the bone fractures; arthritis; infections. • Computed Tomography (CT) – CT scans use a series of x-rays to create cross-sections of the inside of the body, including bones, blood vessels, and soft tissues. – Used to diagnose bone fractures; tumors; vascular disease; heart disease; infections; used to guide biopsies. Introduction 12/22/2022 9
  • 10. Image Modalities • Magnetic Resonance Imaging (MRI) – MRIs use magnetic fields and radio waves to create detailed images of organs and tissues in the body. – Used to diagnose stoke; spinal cord disorders; tumors; blood vessel issues; joint or tendon injuries. Introduction 12/22/2022 10
  • 11. Image Modalities • Positron Emission Tomography (PET) – Use radioactive drugs and a scanning machine to show how the tissues and organs are functioning. – Used to diagnose heart disease; coronary artery disease; seizures; epilepsy; • Ultrasound images – Ultrasound uses high-frequency sound waves to produce images of organs and structures within the body. – Used to diagnose gallbladder disease; breast lumps; genital/prostate issues; joint inflammation. Introduction 12/22/2022 11
  • 12. Filtering • Medical images are generated by electronic equipments - presence of noise is inevitable. • To suppress or remove the noises in an image. • Filters modify value of pixels by considering the values of neighboring pixels. Introduction 12/22/2022 12
  • 13. Image segmentation • Process of partitioning an image into number of regions of similar features or segments Introduction CT Lung Image and Segmented Image 12/22/2022 13
  • 14. Image enhancement • Improve the visibility and perceptibility of specific regions in an image for analysis. • Enhancing the contrast among adjacent regions • Simplifying the image by selective smoothing Introduction 12/22/2022 14
  • 15. Lung Tumor • The tumor is uncontrolled growth of cells in any part of the body. • A lung tumor can be either: – benign or – malignant • Not all tumors are cancerous • Malignant tumor – very harmful and it spreads to other part of the body. – have a heterogeneous structure and contain active cells. Introduction 12/22/2022 15
  • 16. Contd… • Benign tumor – has uniformity in structure and does not contain cancer cells – not much dangerous and do not spread to other part of the body. Introduction 12/22/2022 16
  • 17. Contd… • Tumor stages can be identified based on – tumor size, growth rate or spreading area. • Staging is a way to describe – where the tumor is located, – where it has spread, and whether it is affecting other parts of the body, Introduction 12/22/2022 17
  • 18. Tumor Classification • Tumor classification extracts information from the segmented tumor region • Also classifies healthy and tumor tissues for a large database of medical images. • Classification algorithm – Helps to detect and classify the tumors as either benign or malignant for early diagnosis. Introduction 12/22/2022 18
  • 19. Deep Learning • Rapid growth in medical images and modalities requires extensive efforts by medical expert for analysis. – Subjective, prone to human error and may have large variations across different expert. Introduction 12/22/2022 19
  • 20. Contd… • Convolutional Neural Networks (CNNs) are biologically inspired variants of Multi-Layer Perceptrons (MLPs). • They tend to recognize visual patterns, directly from raw image pixels. • DNN is an increase in the number of hidden nodes in a simple convolution neural network. Introduction 12/22/2022 20
  • 21. Contd… DNN consists of three important layers: 1. Input layer 2. Hidden layer 3. Output layer Introduction 12/22/2022 21
  • 22. Contd… 1. Input Layer • This input data specifies the width, height, and number of channels. • Typically, the number of channels in CT image is 2 for each pixel, for color images it is 3 as they are RGB images. Introduction 12/22/2022 22
  • 23. Literature Review Literature Review Author Title Classifier used Accuracy Supria Suresh et al. (2019) Journal of King Saud University - Computer and Information Sciences NROI based feature learning for automated tumor stage classification of pulmonary lung nodules using deep convolutional neural networks . DCNN 97.80 Lakshmanaprabu , et al (2019) Future Generation Computer Systems Optimal deep learning model for classification of lung cancer on ct images, Future Gener Modified Gravitational Search Algorithm 94.56 12/22/2022 23
  • 24. Contd… Literature Review Author Title Classifier used Acccuracy A.O.de Carvalho Filho et al. (2018) Classification of patterns of benignity and malignancy based on ct using topology-based phylogenetic diversity index and convolutional neural network, Pattern Recognition CNN 92.63 Y. Xie et al. (2018) Information Fusion Fusing texture, shape and deep model-learned information at decision level for automated classification of lung nodules on chest CT FUSE-Texture shape and data model 89.53 12/22/2022 24
  • 25. Contd… Literature Review Author Title Classifier used Accuracy W. Shen et al. (2015) Information Processing in Medical Imaging; Springer Multi-scale convolutional neural networks for lung nodule classification, in: Information Processing in Medical Imaging SVM,RF 86.84 Y. Xie et al. (2019) MED IMAGE ANALYSIS Semi-supervised adversarial model for benign–malignant lung nodule classification on chest CT DCNN 92.53 12/22/2022 25
  • 26. Contd… Literature Review Author Title Classifier used Accuracy S.R. Sannasi Chakravarthy et al. (2019) Asian Pacific journal of cancer prevention: APJCP Lung cancer detection using probabilistic neural network with modified crow-search algorithm PNN 90 12/22/2022 26
  • 27. RESEARCH GAP • Edge detection and over segmentation is considered as a research problem in the medical image segmentation. • Luminance and maintaining structure similarity are the challenging task in image enhancement. • The traditional classification algorithms requires a separate feature extraction model and the Performance gets low for large volume of dataset. 12/22/2022 27
  • 28. OBJECTIVES • To find the lung cancer at an early stage • To present CAD system based hybrid DNN with adaptive optimization algorithm • To get better classification accuracy by extracting the optimal features under the efficient feature extraction and feature selection approaches. • To minimize the error during classification process • To minimize the execution time 12/22/2022 28
  • 29. Simulation Setup Simulations are performed using – GPU architecture with MATLAB R2015a. – Intel Core i3 II generation processor based 4 GB RAM computer Dataset – Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI) 12/22/2022 29
  • 30. Proposed Method 12/22/2022 30 Testing Image Preprocessing using FNLM filter Segmentation by MasiEMT-SSA Feature extraction by GLRLM Feature selection using BGOA Classification using DNN-ASCCS Cancerous Non-Cancerous Trained Lung Cancer Images Preprocessing using FNLM filter Segmentation by MasiEMT-SSA Feature extraction by GLRLM Feature selection using BGOA Training Phase Testing Phase
  • 31. Fast Non Local Mean Filter FNLM is applied to eliminate the noise from the images. neighbourhood filter that mines an average value of neighbouring pixels to a central pixel PHASE -I 12/22/2022 31
  • 32. Fast Non Local Mean Filter For the NLM, the weights are calculated which only use pixel information to measure the similarity between a central region patch and its neighboring patches. PHASE -I 12/22/2022 32
  • 33. Fast Non Local Mean Filter The proposed method is to combine the advantages of the Non Local Means algorithm and the bilateral filter with added texture information as weights. PHASE -I 12/22/2022 33
  • 34. Fast Non Local Mean Filter 12/22/2022 34 According to the structural similarity of neighbouring pixels, the weights are computed. The high weight is assigned once the similarity of gray-level in the neighbouring pixel is high. The FNLM filter is represented as:    I n n I n m w m I NL ) ( ) , ( ) ( ] [
  • 35. Fast Non Local Mean Filter 12/22/2022 35       n d n I m I G e m Z n m w 2 2 2 ) ( ) ( ) ( ) ( 1 ) , (    
  • 36. Masi entropy based Segmentation Segmentation is a procedure of dividing the image into sub-regions. For an image segmentation process, a multilevel thresholding (MT) method is established that uses the Masi entropy as an impartial function. 12/22/2022 36
  • 37. Masi entropy based Segmentation The complexity of MT is growths quickly with growing number of thresholds. Therefore, the SSA is employed to adjust the threshold process and to decrease the computational complexity (CC) involved in MT. PHASE -I 12/22/2022 37
  • 38. Masi entropy based Segmentation The key motivation of SSA mimics the crawling behaviour of salps. It is capable to enhance the initial random solutions efficiently and converge in the direction of the best value. PHASE -I 12/22/2022 38
  • 39. Masi entropy based Segmentation the population is divided into two groups such as leaders and followers. In the SSA, the potential solutions are signified by a salps. The fitness of each salp is estimated through the Masientropy function PHASE -I 12/22/2022 39
  • 40. Masi entropy based Segmentation The locations of the salps are the thresholds. By randomly initializing the locations of the salps, the algorithm starts in the search space as: PHASE -I 12/22/2022 40     lb lb ub noS rand round      ) ( . dim ,
  • 41. Feature Extraction-Grey Level Run Length Matrix (GLRLM) The GLRLM approach is utilized to extracting the higher order numerical texture information. By re-quantization prior to the growth of the matrix, the quantity of gray levels is reduced in the image. PHASE -I 12/22/2022 41
  • 42. Feature Extraction- GLRLM The features of Run Length Nonuniformity (RLN), Long Run High Gray-Level Emphasis (LRHGLE), Low Gray-Level Run Emphasis (LGLRE), Long Run Emphasis (LRE), Gray-Level Nonuniformity (GLN), Run Percentage (RP), Long Run Low Gray-Level Emphasis (LRLGLE),High Gray-Level Run Emphasis (HGLRE), Short Run Low Gray-Level Emphasis (SRLGLE), Short Run High Gray-Level Emphasis (SRHGLE), and Short Run Emphasis (SRE) are extracted using the GLRLM approach. PHASE -I 12/22/2022 42
  • 43. Feature Extraction-GLRLM • The GLRLM is established as: PHASE -I 12/22/2022 43   max 0 , 0 , ) , ( ) ( K v N u v u r K r       
  • 44. FEATURE SELECTION-BGOA Under the specific conditions, the Grasshoppers are considered a pest. The key feature of these insects is connected to their movement. In a larval state, its movement is slow as compared to the huge and rapid movements of the adults. PHASE -I 12/22/2022 44
  • 45. Classification-DNN-ASCCS The structure of DNN contains three layer such as input layer, output layer and hidden layers . The DNN is constructed with two hidden layers by the desired weight PHASE -I 12/22/2022 45
  • 46. DNN Structure PHASE -I 12/22/2022 46 Softmax regression Input Layer Hidden Layer 1 Hidden Layer 2 Output Layer
  • 47. Classification-DNN-ASCCS The combination of sine cosine algorithm and crow search algorithm is named as SCCS. The benefits of the two algorithms are considered and use to design an effective hybrid algorithm which can perform very well compared to other algorithms. PHASE -I 12/22/2022 47
  • 48. Classification-DNN-ASCCS In this work, adaptive SCCS is termed as ASCCS is introduced for weight updation of DNN. Initially, the concept behind the CSA is considered in the ASCCS algorithm PHASE -I 12/22/2022 48
  • 49. Classification-DNN-ASCCS The last layer of DNN is a softmax classifier and its main aim is to categorize the learned features from DNN. Softmax is used as the activation function in this classifier. PHASE -I 12/22/2022 49
  • 50. Filter Output Comparison 12/22/2022 50 (a) (b) (c) (d) Input Image FNLM Filter Robust bilateral filter Rolling guidance filter
  • 51. Image Segmentation Comparison PHASE -I 12/22/2022 51 (a) (b) (c) (d) a)pre-processed images, (b) segmentation using MasiEMT-SSA, (c) segmentation using masi entropy (d) segmentation using region growing
  • 52. Comparison of Accuracy Performance PHASE -I 12/22/2022 52
  • 54. Lung cancer output images (a) input image (b) filtered image (c) segmented lung (d) segmented nodule 12/22/2022 54 Input image Filtered image Segmented lung Segmented nodule Types of cancer Normal Benign Malignant Normal Malignant Malignant Malignant Normal Normal (a) (b) (c) (d) Benign
  • 56. Parameters The output is either tumor (+ve) or normal (-ve). • True positive (TP): Prediction is +ve and tumor image classified as tumor • True negative (TN): Prediction is -ve and non tumor image classified as normal • False positive (FP): Prediction is +ve and tumor image classified as normal image • False negative (FN): Prediction is -ve and non tumor classified as tumor image. Performance Metrics 12/22/2022 56
  • 57. Contd… 1. Accuracy • the closeness of a measured value to an actual value. Performance Metrics 12/22/2022 57
  • 58. Contd… Accuracy of the proposed lung tumor detection and classification using DCNN is calculated for: Three architectures with 128 ×128, 192×192 and 256 × 256 patch sizes. Performance Metrics 12/22/2022 58
  • 59. Contd… 2. Sensitivity It is predicting the positive values to actual positive values. Performance Metrics 12/22/2022 59 FN TP TP y Sensitivit  
  • 60. Contd… • 3. Specificity: It is a measurement of predicting actual negatives as negative. Performance Metrics 12/22/2022 60 FP TN TN y Specificit  
  • 61. Contd… The CT images are taken from LIDC (IDRI) and databases. The dataset consists of 1018 CT scans of 1010 patients. Here 70 % of the dataset is considered for a training the model and 30% is used for a test set. pixel size ranges between 0.48 and 0.72 mm, the thickness of each slice varies from 1.25 to 2.5 mm range. A sample image has been given as an input to the trained model. This model is able to classify the given image as normal, benign or malignant. Performance Metrics 12/22/2022 61
  • 65. True Positive Rate Performance 12/22/2022 65 Classifier
  • 66. False Positive Rate Performance PHASE -I 12/22/2022 66 Classifier
  • 67. Accuracies of different Features 12/22/2022 67
  • 68. Comparison of Accuracy PHASE -I 12/22/2022 68
  • 69. Testing and Training Accuracy PHASE -I 12/22/2022 69
  • 70. Comparison of Proposed Approach PHASE -I 12/22/2022 70 Parameters Acc (%) Sensitivity (%) Specificity (%) TPR FPR DNN-ASCCS (proposed) 99.17 99.3 99.03 99.3 0.96 AdaBoost 94.77 93.3 95.7 93.3 4.29 KNN 95.5 94.3 96.3 94.3 3.68 NB 96.3 95.3 97.03 95.3 2.96 Bagging 97.11 96.3 97.64 96.3 2.35 SVM 97.88 97.28 98.28 97.28 1.72
  • 71. Computation Time PHASE -I 12/22/2022 71 Processing Steps FNLM Filter (sec) MasiEMT-SSA Segmentation (sec) GLRLM Feature Extraction (sec) BGOA Feature Selection (sec) Classification (sec) Total Time (sec) DNN 1.83 7.14 32.61 50.75 42.23 134.56 DNN- ASCCS 1.83 7.14 32.61 50.75 15.67 108
  • 72. Comparison of different state of art methods PHASE -I 12/22/2022 72 Authors Classifiers Datasets Accuracy (%) DNN-ASCCS (proposed) DNN-ASCCS LIDC-IDRI 99.17 Suresh [33] DCNN LIDC-IDRI 97.80 Lakshmanaprabu [35] MGSA LIDC-IDRI 94.56 de Carvalho Filho et al. [36] CNN LIDC-IDRI 92.63 Xie et al [37] Fuse-TSD LIDC-IDRI 89.53 Shen et al [38] SVM, RF LIDC-IDRI 86.84 Xie et al [39] DCNN LIDC-IDRI 92.53 Harikumar and Sannasi [40] PNN LIDC-IDRI 90
  • 73. Conclusion Lung cancer is one of the leading cause of cancer mortality worldwide, with the lowest survival rates after diagnosis. The early detection of lung tumor helps to increase the chances of improving patient survival. Medical image form a vital component of a patient’s health record and it requires manipulation, processing and handling of data by computers. Hence medical data is also a type of bigdata and its analysis become complex. In-order to solve these issues DNN-ASCCS classifies the lung tumor from CT images with high Accuracy. 12/22/2022 73 Results and Conclusion
  • 74. FUTURE WORK In the future, the proposed approach will be extended by the diagnosis of lung cancer using advanced methods and algorithms in less time complexity. 12/22/2022 74
  • 75. MAJOR REFERENCES 1. Arulmurugan, R., and H. Anandakumar. "Early detection of lung cancer using wavelet feature descriptor and feed forward back propagation neural networks classifier." In Computational Vision and Bio Inspired Computing, pp. 103-110. Springer, Cham, 2018. 2. Thabsheera, AP Ayshath, T. M. Thasleema, and R. Rajesh. "Lung cancer detection using CT scan images: A review on various image processing techniques." In Data Analytics and Learning, pp. 413-419. Springer, Singapore, 2019. 3. Yu, Haixin, Zhong Guan, Katarina Cuk, Yan Zhang, and Hermann Brenner. "Circulating MicroRNA Biomarkers for Lung Cancer Detection in East Asian Populations." Cancers 11, no. 3 (2019): 415. 4. Bhattacharjee, Ananya, and SwanirbharMajumder. "Automated Computer-Aided Lung Cancer Detection System." In Advances in Communication, Devices and Networking, pp. 425-433. Springer, Singapore, 2019. 5. Adir, Yochai, ShovalTirman, Shirley Abramovitch, Cynthia Botbol, Aviv Lutaty, TaliScheinmann, EyalDavidovits et al. "Novel non-invasive early detection of lung cancer using liquid immunobiopsy metabolic activity profiles." Cancer Immunology, Immunotherapy 67, no. 7 (2018): 1135-1146. 12/22/2022 75
  • 76. Contd… 6. Zhang, Yu-Dong &Satapathy, Suresh & Guttery, David &Gorriz, Juan & Wang, Shuihua. (2021). Improved Breast Cancer Classification Through Combining Graph Convolutional Network and Convolutional Neural Network. Information Processing and Management. 58. 102439. 10.1016/j.ipm.2020.102439. 7. Wang, Shuihua&Govindaraj, Vishnuvarthanan&Gorriz, Juan & Zhang, Xin & Zhang, Yu-Dong. (2020). Covid-19 Classification by FGCNet with Deep Feature Fusion from Graph Convolutional Network and Convolutional Neural Network. Information Fusion. 10.1016/j.inffus.2020.10.004. 8. Suresh, Supriya & Mohan, Subaji. (2019). NROI based feature learning for Automated Tumor Stage Classification of pulmonary lung nodules using Deep Convolutional Neural Networks. Journal of King Saud University - Computer and Information Sciences. 10.1016/j.jksuci.2019.11.013 9. Lakshmanaprabu, S., Mohanty, S. N., Shankar, K., Arunkumar, N., & Ramirez, G. (2019). Optimal deep learning model for classification of lung cancer on ct images. Future Generation Computer Systems, 92 , 374–382. MAJOR REFERENCES 12/22/2022 76
  • 77. Contd… 10. de Carvalho Filho, A. O., Silva, A. C., de Paiva, A. C., Nunes, R. A., & Gattass, M. (2018). Classification of patterns of benignity and malignancy based on ct using topology-based phylogenetic diversity index and convolutional neural network. Pattern Recognition, 81 , 200–212 11. Xie, Y., Zhang, J., Xia, Y., Fulham, M., & Zhang, Y. (2018). Fusing texture, shape and deep model-learned information at decision level for automated classification of lung nodules on chest ct. Information Fusion, 42 , 102–110 12. Shen, W.; Zhou, M.; Yang, F.; Yang, C.Y.; Tian, J. Multi-scale Convolutional Neural Networks for Lung Nodule Classification. In Information Processing in Medical Imaging; Springer: Cham, Switzerland, 2015; pp. 588–599. 13. Y. Xie, J. Zhang, Y. Xia, Semi-supervised adversarial model for benign–malignant lung nodule classification on chest CT, MED IMAGE ANAL, 57 (2019) 237-248. 14. SannasiChakravarthy, S. R., and HarikumarRajaguru. "Lung Cancer Detection using Probabilistic Neural Network with modified Crow-Search Algorithm." Asian Pacific journal of cancer prevention: APJCP 20, no. 7 (2019): 2159. MAJOR REFERENCES 12/22/2022 77
  • 78. Published • Surendar.P & Ponnibala.M 2021, ‘Diagnosis of Lung Cancer Using Hybrid Deep Neural Network with Adaptive Sine Cosine Crow Search Algorithm’, This research paper was accepted in Journal of Computational science, Elsevier Netherlands, with DOI: 10.1016/j.jocs.2021.101374, Print ISSN Number : ISSN: 1877- 7503. (Updated Anna University List of Journals (Annexure-I). 12/22/2022 78